Wall clock time and date at job start Tue Mar 31 2020 16:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42903 * 113.99999 * 2 1 4 4 C 1.53000 * 109.47333 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46919 * 64.99692 * 4 3 2 6 6 C 1.46503 * 120.00102 * 269.99996 * 5 4 3 7 7 C 1.50699 * 109.47124 * 270.00356 * 6 5 4 8 8 H 1.07998 * 120.00407 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00005 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00252 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00071 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46691 * 60.00427 * 11 9 7 13 13 H 1.48497 * 109.47151 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47272 * 300.00434 * 11 9 7 15 15 C 1.34772 * 120.00090 * 90.00268 * 5 4 3 16 16 O 1.21283 * 120.00375 * 359.97438 * 15 5 4 17 17 C 1.50706 * 120.00140 * 179.97438 * 15 5 4 18 18 N 1.46498 * 109.47043 * 179.97438 * 17 15 5 19 19 N 1.39825 * 125.39118 * 269.95891 * 18 17 15 20 20 C 1.30243 * 110.09454 * 180.02562 * 19 18 17 21 21 C 1.50693 * 126.17224 * 180.02562 * 20 19 18 22 22 C 1.45854 * 107.65404 * 359.97438 * 20 19 18 23 23 C 1.39998 * 134.26054 * 180.29960 * 22 20 19 24 24 C 1.37018 * 118.15706 * 180.15972 * 23 22 20 25 25 C 1.38804 * 119.64437 * 359.50684 * 24 23 22 26 26 N 1.31510 * 121.59072 * 0.26128 * 25 24 23 27 27 C 1.32757 * 121.46876 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47462 * 60.00209 * 1 2 3 29 29 H 1.09000 * 109.47423 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47332 * 300.00159 * 1 2 3 31 31 H 1.09001 * 109.47428 * 59.99649 * 3 2 1 32 32 H 1.09007 * 109.46664 * 299.99681 * 3 2 1 33 33 H 1.09002 * 109.47077 * 304.99699 * 4 3 2 34 34 H 1.08998 * 109.47189 * 184.99995 * 4 3 2 35 35 H 1.09004 * 109.47054 * 30.00116 * 6 5 4 36 36 H 1.08996 * 109.47287 * 150.00482 * 6 5 4 37 37 H 0.96997 * 120.00077 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.47031 * 59.99993 * 17 15 5 39 39 H 1.09002 * 109.47127 * 300.00044 * 17 15 5 40 40 H 1.09002 * 109.47397 * 269.97228 * 21 20 19 41 41 H 1.09002 * 109.47177 * 29.97556 * 21 20 19 42 42 H 1.09001 * 109.47445 * 149.97716 * 21 20 19 43 43 H 1.08001 * 120.92386 * 359.94005 * 23 22 20 44 44 H 1.08002 * 120.18053 * 179.79335 * 24 23 22 45 45 H 1.08000 * 119.20779 * 180.23516 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 4.1062 -0.8925 -1.3402 7 6 5.5017 -1.2981 -0.9410 8 1 6.2200 -0.5462 -0.6495 9 6 5.8610 -2.6292 -0.9470 10 7 4.9862 -3.5450 -1.3015 11 14 7.5910 -3.1319 -0.4529 12 1 7.8537 -2.6956 0.9421 13 1 7.7224 -4.6082 -0.5434 14 1 8.5722 -2.4912 -1.3651 15 6 4.2633 1.3329 -2.3200 16 8 4.1556 2.5386 -2.2462 17 6 4.7177 0.6943 -3.6072 18 7 4.9631 1.7351 -4.6085 19 7 4.0152 2.2338 -5.5074 20 6 4.5525 3.1491 -6.2623 21 6 3.8575 3.9236 -7.3522 22 6 5.9478 3.2899 -5.8616 23 6 7.0099 4.0966 -6.2873 24 6 8.2219 3.9514 -5.6648 25 6 8.3595 3.0291 -4.6367 26 7 7.3523 2.2807 -4.2431 27 6 6.1562 2.3737 -4.8116 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8463 -0.8901 33 1 3.8507 0.5686 0.8427 34 1 3.9784 2.1766 0.0902 35 1 3.3857 -1.3632 -0.6712 36 1 3.9139 -1.2123 -2.3643 37 1 5.2391 -4.4814 -1.3060 38 1 3.9443 0.0171 -3.9697 39 1 5.6367 0.1353 -3.4309 40 1 3.9581 3.3905 -8.2977 41 1 2.8011 4.0298 -7.1056 42 1 4.3106 4.9109 -7.4419 43 1 6.8787 4.8110 -7.0865 44 1 9.0644 4.5546 -5.9693 45 1 9.3170 2.9231 -4.1483 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931896570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:00 Heat of formation + Delta-G solvation = 26.168298 kcal Electronic energy + Delta-G solvation = -28896.371852 eV Core-core repulsion = 24916.083001 eV Total energy + Delta-G solvation = -3980.288851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.40460 -39.22435 -37.93731 -37.35501 -34.95969 -34.09999 -32.61994 -31.74769 -30.51422 -29.88106 -29.14663 -27.06779 -26.29092 -25.49570 -23.75221 -22.93003 -22.81313 -21.99968 -19.79506 -18.64601 -17.32848 -16.94243 -16.82790 -16.46161 -16.08006 -15.91100 -15.75829 -15.10333 -14.92392 -14.69831 -14.32377 -14.16924 -13.94158 -13.37764 -13.30092 -13.13489 -12.97960 -12.66371 -12.51768 -12.36507 -12.08676 -11.98798 -11.82518 -11.51974 -11.48540 -11.38849 -10.95527 -10.84874 -10.69114 -10.55282 -10.42285 -10.14082 -9.73909 -9.42569 -9.26559 -9.21583 -8.78028 -8.51732 -7.99035 -7.75250 -6.13845 -4.21727 0.93357 1.43797 2.30148 2.58334 3.25983 3.28847 3.32959 3.37711 3.81387 3.98500 4.15296 4.29124 4.38139 4.41992 4.63269 4.85239 5.06708 5.17906 5.23912 5.29388 5.38291 5.41063 5.46834 5.48624 5.50530 5.64342 5.65279 5.66657 5.69825 5.74741 5.82764 5.85857 5.94173 6.06398 6.19216 6.35319 6.39529 6.67921 6.78403 6.98352 7.27368 7.47274 7.55940 7.68884 7.81629 8.09054 8.13400 8.29225 8.78246 8.94589 9.46062 10.92623 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009132 B = 0.004465 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.284492 B = 6270.071057 C = 8329.117636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.049 3.951 4 C 0.124 3.876 5 N -0.582 5.582 6 C 0.237 3.763 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.068 3.932 10 N -0.889 5.889 11 Si 0.896 3.104 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.504 3.496 16 O -0.566 6.566 17 C 0.128 3.872 18 N -0.365 5.365 19 N -0.227 5.227 20 C 0.094 3.906 21 C -0.069 4.069 22 C -0.226 4.226 23 C 0.002 3.998 24 C -0.225 4.225 25 C 0.166 3.834 26 N -0.493 5.493 27 C 0.330 3.670 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.034 0.966 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.032 0.968 37 H 0.265 0.735 38 H 0.120 0.880 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 12.977 -8.430 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.029 4.029 4 C 0.000 4.000 5 N -0.313 5.313 6 C 0.117 3.883 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.136 4.136 10 N -0.527 5.527 11 Si 0.723 3.277 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.291 3.709 16 O -0.447 6.447 17 C 0.004 3.996 18 N -0.153 5.153 19 N -0.042 5.042 20 C -0.084 4.084 21 C -0.128 4.128 22 C -0.237 4.237 23 C -0.026 4.026 24 C -0.247 4.247 25 C -0.004 4.004 26 N -0.207 5.207 27 C 0.091 3.909 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.155 0.845 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.152 0.848 44 H 0.155 0.845 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.063 11.748 -7.312 13.990 hybrid contribution 1.319 0.606 -0.244 1.472 sum -0.744 12.353 -7.556 14.500 Atomic orbital electron populations 1.22681 0.82138 1.02416 0.99165 1.88052 1.18694 1.27379 1.95203 1.23011 0.95220 0.84949 0.99752 1.21335 0.91059 0.99584 0.88016 1.48117 1.63321 1.09994 1.09838 1.19548 0.97669 0.72475 0.98579 1.21491 0.97210 0.92519 1.46927 0.92074 1.24919 0.97530 0.96292 0.94831 1.69925 1.34420 1.01238 1.47099 0.86590 0.84477 0.77309 0.79334 1.20124 1.21194 1.19979 1.20550 0.77637 0.87045 0.85709 1.90622 1.55250 1.14503 1.84291 1.21626 1.06279 0.86930 0.84744 1.47769 1.03968 1.33807 1.29787 1.76634 1.13759 1.11886 1.01876 1.23388 0.90991 0.96318 0.97700 1.20193 1.00300 0.98319 0.93974 1.20355 0.95750 1.04317 1.03240 1.20662 0.90686 0.94665 0.96618 1.21573 0.98559 1.03628 1.00928 1.22722 0.96009 0.89290 0.92355 1.66783 0.97890 1.26614 1.29375 1.18938 0.88005 0.91708 0.92236 0.94655 0.89814 0.94733 0.93188 0.93457 0.89228 0.89577 0.92775 0.95022 0.92496 0.86249 0.84492 0.90061 0.90274 0.90233 0.84752 0.84494 0.82066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.86 9.53 -35.23 -0.34 -7.19 16 3 C 0.05 0.83 6.28 37.16 0.23 1.06 16 4 C 0.12 2.38 5.81 -4.04 -0.02 2.36 16 5 N -0.58 -12.77 2.42 -175.06 -0.42 -13.19 16 6 C 0.24 5.75 4.78 -5.19 -0.02 5.73 16 7 C -0.54 -14.30 9.28 -34.44 -0.32 -14.62 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 11 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 15 C 0.50 11.27 7.74 -10.98 -0.09 11.19 16 16 O -0.57 -13.74 16.01 5.55 0.09 -13.65 16 17 C 0.13 2.66 5.44 -5.19 -0.03 2.63 16 18 N -0.37 -7.37 3.13 -61.60 -0.19 -7.56 16 19 N -0.23 -4.22 12.40 34.82 0.43 -3.79 16 20 C 0.09 1.44 7.44 -80.22 -0.60 0.84 16 21 C -0.07 -0.66 10.48 36.00 0.38 -0.29 16 22 C -0.23 -3.59 6.35 -105.18 -0.67 -4.26 16 23 C 0.00 0.03 10.18 -39.36 -0.40 -0.38 16 24 C -0.22 -2.50 10.04 -39.81 -0.40 -2.90 16 25 C 0.17 2.29 11.15 -17.48 -0.19 2.09 16 26 N -0.49 -9.17 10.40 -12.34 -0.13 -9.30 16 27 C 0.33 6.36 7.97 -156.11 -1.24 5.11 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.72 8.07 -51.93 -0.42 1.30 16 34 H 0.09 1.62 7.42 -51.93 -0.39 1.23 16 35 H 0.05 1.42 7.12 -51.93 -0.37 1.05 16 36 H 0.03 0.79 6.44 -51.93 -0.33 0.45 16 37 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.12 2.32 7.40 -51.93 -0.38 1.94 16 39 H 0.14 2.97 8.00 -51.93 -0.42 2.55 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -34.46 387.31 -7.87 -42.33 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.50 Total: 2.81 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: -2.36 Total: 11.85 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.42 Total: -57.87 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.25 Total: -20.84 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.46 -7.87 -42.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931896570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.494 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds