Wall clock time and date at job start Tue Mar 31 2020 16:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42903 * 113.99999 * 2 1 4 4 C 1.53000 * 109.47333 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46919 * 64.99692 * 4 3 2 6 6 C 1.46503 * 120.00102 * 269.99996 * 5 4 3 7 7 C 1.50699 * 109.47124 * 270.00356 * 6 5 4 8 8 H 1.07998 * 120.00407 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00005 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00252 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00071 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46691 * 60.00427 * 11 9 7 13 13 H 1.48497 * 109.47151 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47272 * 300.00434 * 11 9 7 15 15 C 1.34772 * 120.00090 * 90.00268 * 5 4 3 16 16 O 1.21283 * 120.00375 * 359.97438 * 15 5 4 17 17 C 1.50706 * 120.00140 * 179.97438 * 15 5 4 18 18 N 1.46498 * 109.47043 * 179.97438 * 17 15 5 19 19 N 1.39825 * 125.39118 * 269.95891 * 18 17 15 20 20 C 1.30243 * 110.09454 * 180.02562 * 19 18 17 21 21 C 1.50693 * 126.17224 * 180.02562 * 20 19 18 22 22 C 1.45854 * 107.65404 * 359.97438 * 20 19 18 23 23 C 1.39998 * 134.26054 * 180.29960 * 22 20 19 24 24 C 1.37018 * 118.15706 * 180.15972 * 23 22 20 25 25 C 1.38804 * 119.64437 * 359.50684 * 24 23 22 26 26 N 1.31510 * 121.59072 * 0.26128 * 25 24 23 27 27 C 1.32757 * 121.46876 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47462 * 60.00209 * 1 2 3 29 29 H 1.09000 * 109.47423 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47332 * 300.00159 * 1 2 3 31 31 H 1.09001 * 109.47428 * 59.99649 * 3 2 1 32 32 H 1.09007 * 109.46664 * 299.99681 * 3 2 1 33 33 H 1.09002 * 109.47077 * 304.99699 * 4 3 2 34 34 H 1.08998 * 109.47189 * 184.99995 * 4 3 2 35 35 H 1.09004 * 109.47054 * 30.00116 * 6 5 4 36 36 H 1.08996 * 109.47287 * 150.00482 * 6 5 4 37 37 H 0.96997 * 120.00077 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.47031 * 59.99993 * 17 15 5 39 39 H 1.09002 * 109.47127 * 300.00044 * 17 15 5 40 40 H 1.09002 * 109.47397 * 269.97228 * 21 20 19 41 41 H 1.09002 * 109.47177 * 29.97556 * 21 20 19 42 42 H 1.09001 * 109.47445 * 149.97716 * 21 20 19 43 43 H 1.08001 * 120.92386 * 359.94005 * 23 22 20 44 44 H 1.08002 * 120.18053 * 179.79335 * 24 23 22 45 45 H 1.08000 * 119.20779 * 180.23516 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 4.1062 -0.8925 -1.3402 7 6 5.5017 -1.2981 -0.9410 8 1 6.2200 -0.5462 -0.6495 9 6 5.8610 -2.6292 -0.9470 10 7 4.9862 -3.5450 -1.3015 11 14 7.5910 -3.1319 -0.4529 12 1 7.8537 -2.6956 0.9421 13 1 7.7224 -4.6082 -0.5434 14 1 8.5722 -2.4912 -1.3651 15 6 4.2633 1.3329 -2.3200 16 8 4.1556 2.5386 -2.2462 17 6 4.7177 0.6943 -3.6072 18 7 4.9631 1.7351 -4.6085 19 7 4.0152 2.2338 -5.5074 20 6 4.5525 3.1491 -6.2623 21 6 3.8575 3.9236 -7.3522 22 6 5.9478 3.2899 -5.8616 23 6 7.0099 4.0966 -6.2873 24 6 8.2219 3.9514 -5.6648 25 6 8.3595 3.0291 -4.6367 26 7 7.3523 2.2807 -4.2431 27 6 6.1562 2.3737 -4.8116 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8463 -0.8901 33 1 3.8507 0.5686 0.8427 34 1 3.9784 2.1766 0.0902 35 1 3.3857 -1.3632 -0.6712 36 1 3.9139 -1.2123 -2.3643 37 1 5.2391 -4.4814 -1.3060 38 1 3.9443 0.0171 -3.9697 39 1 5.6367 0.1353 -3.4309 40 1 3.9581 3.3905 -8.2977 41 1 2.8011 4.0298 -7.1056 42 1 4.3106 4.9109 -7.4419 43 1 6.8787 4.8110 -7.0865 44 1 9.0644 4.5546 -5.9693 45 1 9.3170 2.9231 -4.1483 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931896570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:59 Heat of formation + Delta-G solvation = 3.548194 kcal Electronic energy + Delta-G solvation = -28897.352733 eV Core-core repulsion = 24916.083001 eV Total energy + Delta-G solvation = -3981.269732 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.59645 -40.92714 -39.10556 -38.73536 -36.76832 -35.35545 -34.62272 -32.92342 -31.86786 -31.05490 -30.40614 -28.96171 -27.50680 -26.80561 -24.94631 -24.81063 -24.14321 -23.30908 -20.98306 -20.26804 -18.73132 -18.56093 -18.41724 -18.06942 -17.43496 -17.20380 -17.01299 -16.60998 -16.50383 -16.19698 -15.96984 -15.57302 -15.16352 -14.60491 -14.49065 -14.28230 -14.24627 -14.11005 -13.68811 -13.63342 -13.43927 -13.39940 -13.23438 -13.07675 -12.95020 -12.85275 -12.78552 -12.62720 -12.17557 -11.99626 -11.84897 -11.75156 -11.53062 -11.01026 -10.67590 -10.56629 -10.37694 -9.99713 -9.59067 -9.21690 -8.21638 -6.36840 -0.13315 0.37361 1.01144 1.40279 1.41992 1.43521 1.47763 1.52501 2.18695 2.41164 2.85020 2.86489 3.08299 3.20280 3.27432 3.53254 3.58056 3.85161 4.02774 4.07216 4.13374 4.14081 4.20967 4.30089 4.34629 4.47110 4.50257 4.53969 4.58564 4.78064 4.79998 4.80341 4.83626 4.90051 4.92837 4.99587 5.22724 5.24178 5.43036 5.55321 5.66193 5.76587 5.84809 6.02336 6.21109 6.43825 6.48969 6.74398 7.00048 7.10914 7.35143 8.84100 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009132 B = 0.004465 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.284492 B = 6270.071057 C = 8329.117636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.059 3.941 4 C 0.117 3.883 5 N -0.584 5.584 6 C 0.258 3.742 7 C -0.552 4.552 8 H 0.051 0.949 9 C 0.025 3.975 10 N -0.916 5.916 11 Si 0.956 3.044 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.274 1.274 15 C 0.504 3.496 16 O -0.587 6.587 17 C 0.140 3.860 18 N -0.391 5.391 19 N -0.276 5.276 20 C 0.108 3.892 21 C -0.067 4.067 22 C -0.243 4.243 23 C 0.012 3.988 24 C -0.209 4.209 25 C 0.155 3.845 26 N -0.549 5.549 27 C 0.290 3.710 28 H 0.040 0.960 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.035 0.965 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.036 0.964 36 H 0.020 0.980 37 H 0.268 0.732 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.185 0.815 44 H 0.187 0.813 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.263 15.295 -9.807 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.019 4.019 4 C -0.006 4.006 5 N -0.313 5.313 6 C 0.137 3.863 7 C -0.590 4.590 8 H 0.069 0.931 9 C -0.176 4.176 10 N -0.555 5.555 11 Si 0.781 3.219 12 H -0.195 1.195 13 H -0.203 1.203 14 H -0.199 1.199 15 C 0.291 3.709 16 O -0.469 6.469 17 C 0.015 3.985 18 N -0.180 5.180 19 N -0.089 5.089 20 C -0.071 4.071 21 C -0.126 4.126 22 C -0.253 4.253 23 C -0.016 4.016 24 C -0.230 4.230 25 C -0.012 4.012 26 N -0.264 5.264 27 C 0.053 3.947 28 H 0.058 0.942 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.054 0.946 36 H 0.038 0.962 37 H 0.078 0.922 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.130 0.870 43 H 0.202 0.798 44 H 0.204 0.796 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.805 14.089 -8.689 16.573 hybrid contribution 1.006 0.005 0.119 1.013 sum 0.201 14.094 -8.570 16.496 Atomic orbital electron populations 1.22886 0.79859 1.03496 1.00609 1.87999 1.21294 1.28004 1.95471 1.22880 0.93339 0.84896 1.00778 1.21521 0.93078 0.99278 0.86691 1.48115 1.63274 1.09108 1.10846 1.19122 0.96274 0.73707 0.97188 1.21628 0.97799 0.92616 1.46982 0.93115 1.25629 1.01061 0.96200 0.94681 1.70017 1.36124 1.01563 1.47810 0.85642 0.80020 0.77208 0.79040 1.19519 1.20335 1.19934 1.20829 0.77120 0.86786 0.86174 1.90577 1.56308 1.15283 1.84726 1.21247 1.04923 0.87540 0.84786 1.47693 1.05129 1.34686 1.30492 1.76583 1.14578 1.14355 1.03433 1.24373 0.91064 0.94547 0.97075 1.20480 1.00062 0.99263 0.92763 1.20767 0.97075 1.04632 1.02808 1.21293 0.89375 0.93928 0.97001 1.22099 0.99821 1.02263 0.98830 1.23439 0.95868 0.88888 0.93038 1.66737 0.98861 1.29240 1.31577 1.19399 0.88068 0.93197 0.94063 0.94172 0.89027 0.92222 0.89667 0.94660 0.89494 0.89338 0.94612 0.96188 0.92245 0.86359 0.86516 0.87728 0.90123 0.87045 0.79793 0.79586 0.79444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.41 -15.14 9.53 -148.98 -1.42 -16.56 16 3 C 0.06 2.01 6.28 71.98 0.45 2.47 16 4 C 0.12 4.66 5.81 86.38 0.50 5.17 16 5 N -0.58 -27.00 2.42 -826.15 -2.00 -29.00 16 6 C 0.26 13.22 4.78 85.63 0.41 13.63 16 7 C -0.55 -30.23 9.28 25.60 0.24 -30.00 16 8 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 9 C 0.03 1.37 5.46 84.65 0.46 1.84 16 10 N -0.92 -52.24 13.29 21.45 0.28 -51.95 16 11 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 15 C 0.50 23.94 7.74 87.66 0.68 24.62 16 16 O -0.59 -29.87 16.01 -3.04 -0.05 -29.92 16 17 C 0.14 6.32 5.44 85.64 0.47 6.79 16 18 N -0.39 -16.75 3.13 -348.80 -1.09 -17.84 16 19 N -0.28 -10.63 12.40 -43.75 -0.54 -11.18 16 20 C 0.11 3.20 7.44 44.76 0.33 3.53 16 21 C -0.07 -1.10 10.48 71.23 0.75 -0.35 16 22 C -0.24 -7.43 6.35 -20.23 -0.13 -7.55 16 23 C 0.01 0.24 10.18 22.41 0.23 0.46 16 24 C -0.21 -3.82 10.04 22.12 0.22 -3.60 16 25 C 0.16 4.06 11.15 84.88 0.95 5.01 16 26 N -0.55 -20.99 10.40 -192.96 -2.01 -23.00 16 27 C 0.29 11.54 7.97 134.12 1.07 12.61 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.09 3.46 8.07 -2.39 -0.02 3.44 16 34 H 0.09 3.44 7.42 -2.39 -0.02 3.42 16 35 H 0.04 1.97 7.12 -2.39 -0.02 1.95 16 36 H 0.02 1.07 6.44 -2.39 -0.02 1.06 16 37 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 38 H 0.12 5.11 7.40 -2.39 -0.02 5.09 16 39 H 0.12 5.58 8.00 -2.39 -0.02 5.56 16 40 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.18 1.76 8.06 -2.91 -0.02 1.73 16 44 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 45 H 0.19 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -80.24 387.31 4.07 -76.16 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 1.00 Total: 21.15 kcal Atomic # 6 Polarization: 28.73 SS G_CDS: 7.87 Total: 36.60 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -5.35 Total: -132.97 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -1.47 Total: -46.48 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -80.24 4.07 -76.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931896570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.711 kcal (2) G-P(sol) polarization free energy of solvation -80.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds