Wall clock time and date at job start Tue Mar 31 2020 16:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48502 * 109.47219 * 270.00216 * 3 2 1 5 5 H 1.48501 * 109.47004 * 29.99882 * 3 2 1 6 6 H 1.48496 * 109.47319 * 150.00004 * 3 2 1 7 7 C 1.37877 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00397 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99430 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.46811 * 180.02562 * 9 7 2 11 11 C 1.34958 * 125.98122 * 125.02005 * 10 9 7 12 12 C 1.35243 * 107.86549 * 179.69192 * 11 10 9 13 13 C 1.40408 * 107.86481 * 0.42511 * 12 11 10 14 14 N 1.40152 * 125.97124 * 179.83129 * 13 12 11 15 15 C 1.34780 * 120.00344 * 359.71420 * 14 13 12 16 16 O 1.21294 * 119.99472 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00229 * 180.02562 * 15 14 13 18 18 H 1.09001 * 109.40314 * 300.00290 * 17 15 14 19 19 C 1.53064 * 109.33150 * 180.21807 * 17 15 14 20 20 C 1.53329 * 108.43651 * 191.02831 * 19 17 15 21 21 C 1.52916 * 108.69017 * 67.50367 * 20 19 17 22 22 N 1.45752 * 110.48758 * 309.25746 * 21 20 19 23 23 C 1.46500 * 117.94646 * 199.07171 * 22 21 20 24 24 C 1.53004 * 117.49835 * 3.05987 * 23 22 21 25 25 C 1.52999 * 60.00061 * 252.50901 * 24 23 22 26 26 C 1.33357 * 124.10615 * 19.09950 * 22 21 20 27 27 O 1.21279 * 118.24314 * 177.75316 * 26 22 21 28 28 N 1.31222 * 108.05222 * 359.57015 * 13 12 11 29 29 H 0.97003 * 119.99908 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47017 * 60.00721 * 9 7 2 31 31 H 1.09001 * 109.47307 * 300.00088 * 9 7 2 32 32 H 1.08007 * 126.06811 * 359.97438 * 11 10 9 33 33 H 1.08001 * 126.06498 * 180.26149 * 12 11 10 34 34 H 0.97002 * 120.00210 * 179.71988 * 14 13 12 35 35 H 1.09006 * 109.67160 * 310.74666 * 19 17 15 36 36 H 1.08998 * 109.67681 * 71.28125 * 19 17 15 37 37 H 1.09000 * 109.58612 * 307.74758 * 20 19 17 38 38 H 1.09001 * 109.73981 * 187.35142 * 20 19 17 39 39 H 1.09003 * 109.30266 * 188.94393 * 21 20 19 40 40 H 1.08998 * 109.13292 * 69.46752 * 21 20 19 41 41 H 1.09001 * 115.54785 * 148.76712 * 23 22 21 42 42 H 1.08997 * 117.50043 * 359.97438 * 24 23 22 43 43 H 1.09001 * 117.49578 * 145.02206 * 24 23 22 44 44 H 1.09001 * 117.50040 * 252.51078 * 25 24 23 45 45 H 1.08999 * 117.50231 * 107.48880 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 4.8546 -3.1142 -0.8945 12 6 5.0610 -4.4045 -0.5460 13 6 4.2955 -4.6686 0.6011 14 7 4.2253 -5.8926 1.2802 15 6 4.9309 -6.9514 0.8356 16 8 5.6271 -6.8447 -0.1519 17 6 4.8550 -8.2676 1.5655 18 1 5.1983 -8.1332 2.5913 19 6 5.7488 -9.2905 0.8601 20 6 5.4491 -10.6779 1.4399 21 6 4.0313 -11.0825 1.0345 22 7 3.0862 -10.0204 1.3556 23 6 1.6658 -10.3684 1.4425 24 6 1.2863 -11.8393 1.2598 25 6 0.9705 -10.8253 0.1585 26 6 3.4333 -8.7516 1.5747 27 8 2.5540 -7.9455 1.7934 28 7 3.6617 -3.5674 0.9294 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6798 0.8895 31 1 3.8745 -0.6808 -0.8905 32 1 5.2990 -2.6041 -1.7365 33 1 5.6992 -5.1078 -1.0603 34 1 3.6688 -5.9778 2.0701 35 1 5.5377 -9.2866 -0.2093 36 1 6.7963 -9.0406 1.0288 37 1 5.5230 -10.6434 2.5268 38 1 6.1625 -11.4028 1.0477 39 1 3.7488 -11.9897 1.5688 40 1 4.0073 -11.2741 -0.0382 41 1 1.0805 -9.7815 2.1504 42 1 2.0934 -12.5480 1.0744 43 1 0.4512 -12.2204 1.8476 44 1 -0.0724 -10.5393 0.0218 45 1 1.5698 -10.8669 -0.7510 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933101958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:33 Heat of formation + Delta-G solvation = 52.880374 kcal Electronic energy + Delta-G solvation = -28264.748421 eV Core-core repulsion = 24285.617892 eV Total energy + Delta-G solvation = -3979.130528 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.44277 -40.49835 -39.15117 -37.54355 -36.37074 -34.67797 -33.25901 -32.71799 -31.25705 -30.30318 -29.33443 -27.21400 -25.82503 -23.70712 -22.96734 -22.56848 -22.12353 -21.27697 -20.14300 -19.59920 -18.83623 -17.53992 -17.33738 -17.02862 -16.96335 -16.45018 -15.67045 -15.42661 -15.19509 -14.78988 -14.59733 -14.44811 -14.21822 -14.00265 -13.73997 -13.38807 -13.11961 -12.89407 -12.49894 -12.33923 -12.28247 -12.09133 -12.04122 -11.80343 -11.65547 -11.45000 -11.12713 -11.10708 -10.84932 -10.73299 -10.59318 -10.08724 -9.96693 -9.91615 -9.63369 -9.46309 -8.89140 -8.72079 -8.11985 -7.46482 -6.18460 -4.20579 2.00504 2.28566 2.53695 2.83791 2.91885 3.18756 3.25810 3.27092 3.46214 3.73318 3.77830 4.07495 4.24562 4.25550 4.26951 4.34540 4.38833 4.57444 4.59212 4.79505 4.87142 4.89441 5.05677 5.08978 5.23195 5.32145 5.36913 5.47673 5.50475 5.57162 5.63230 5.72307 5.77410 5.84008 6.10001 6.26260 6.42570 6.48696 6.61181 6.70261 7.02184 7.29667 7.42402 7.61232 7.79893 7.87111 8.24758 8.38986 8.64112 8.92776 9.36272 10.94376 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.002625 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.188189 B =10663.308067 C =11842.796597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.086 0.914 9 C 0.232 3.768 10 N -0.319 5.319 11 C 0.050 3.950 12 C -0.285 4.285 13 C 0.261 3.739 14 N -0.613 5.613 15 C 0.537 3.463 16 O -0.515 6.515 17 C -0.119 4.119 18 H 0.134 0.866 19 C -0.105 4.105 20 C -0.135 4.135 21 C 0.105 3.895 22 N -0.573 5.573 23 C 0.074 3.926 24 C -0.185 4.185 25 C -0.188 4.188 26 C 0.527 3.473 27 O -0.527 6.527 28 N -0.293 5.293 29 H 0.268 0.732 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.420 0.580 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.136 0.864 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.357 -26.224 3.297 28.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.572 4.572 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.101 5.101 11 C -0.100 4.100 12 C -0.316 4.316 13 C 0.007 3.993 14 N -0.261 5.261 15 C 0.321 3.679 16 O -0.389 6.389 17 C -0.143 4.143 18 H 0.152 0.848 19 C -0.143 4.143 20 C -0.173 4.173 21 C -0.017 4.017 22 N -0.304 5.304 23 C -0.030 4.030 24 C -0.223 4.223 25 C -0.226 4.226 26 C 0.314 3.686 27 O -0.403 6.403 28 N -0.123 5.123 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.186 0.814 33 H 0.178 0.822 34 H 0.258 0.742 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.153 0.847 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.405 -24.908 3.546 27.225 hybrid contribution 0.463 0.474 -0.226 0.701 sum 10.868 -24.433 3.320 26.947 Atomic orbital electron populations 1.69884 1.06156 1.27225 1.49247 1.24839 0.94868 0.98766 0.94315 0.86903 0.80443 0.83857 0.78873 1.19736 1.20550 1.18863 1.21132 0.87814 0.95764 1.52495 0.89598 1.20041 0.97466 0.73026 0.98148 1.48639 1.32477 1.10319 1.18669 1.22542 0.95969 0.94725 0.96720 1.21527 1.11475 0.96856 1.01735 1.19134 0.98720 0.86700 0.94729 1.42488 1.46060 1.06973 1.30556 1.19693 0.79688 0.84010 0.84559 1.90647 1.39826 1.83371 1.25083 1.21452 0.94497 0.94534 1.03841 0.84835 1.21541 0.99917 0.91712 1.01169 1.21926 0.95549 0.97700 1.02125 1.21562 0.88746 0.90398 1.01021 1.46651 1.06539 1.08052 1.69190 1.21734 0.82522 0.97267 1.01440 1.23382 1.03821 0.91833 1.03257 1.23365 1.02352 1.03098 0.93821 1.19513 0.90294 0.81845 0.76991 1.90797 1.49593 1.51785 1.48139 1.77441 1.23351 0.95671 1.15849 0.92219 0.94022 0.93359 0.81407 0.82175 0.74247 0.89611 0.89379 0.90585 0.88923 0.89920 0.91384 0.84669 0.88102 0.87680 0.87797 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.30 13.96 55.43 0.77 -26.53 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.87 20.60 27.47 -169.99 -4.67 15.93 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 7 C -0.53 -15.60 9.79 -34.44 -0.34 -15.94 16 8 H 0.09 2.86 8.06 -52.49 -0.42 2.44 16 9 C 0.23 5.70 5.33 -5.19 -0.03 5.67 16 10 N -0.32 -7.57 3.67 -62.56 -0.23 -7.80 16 11 C 0.05 1.00 11.43 -17.24 -0.20 0.80 16 12 C -0.28 -5.79 9.61 -39.83 -0.38 -6.17 16 13 C 0.26 5.61 8.11 -154.39 -1.25 4.36 16 14 N -0.61 -10.85 4.94 -11.13 -0.05 -10.91 16 15 C 0.54 8.15 7.03 -10.99 -0.08 8.08 16 16 O -0.52 -8.84 12.92 5.55 0.07 -8.77 16 17 C -0.12 -1.23 2.78 -93.15 -0.26 -1.49 16 18 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 19 C -0.11 -0.80 4.78 -26.53 -0.13 -0.93 16 20 C -0.14 -0.62 6.02 -26.60 -0.16 -0.78 16 21 C 0.11 0.59 5.53 -4.49 -0.02 0.56 16 22 N -0.57 -5.27 3.14 -167.37 -0.53 -5.79 16 23 C 0.07 0.68 5.91 -67.93 -0.40 0.28 16 24 C -0.19 -1.11 9.66 -26.73 -0.26 -1.36 16 25 C -0.19 -1.53 10.36 -26.73 -0.28 -1.81 16 26 C 0.53 6.32 7.03 -11.87 -0.08 6.24 16 27 O -0.53 -8.42 14.18 5.56 0.08 -8.34 16 28 N -0.29 -7.17 12.42 31.44 0.39 -6.78 16 29 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.04 1.01 7.20 -51.93 -0.37 0.64 16 31 H 0.05 1.07 7.50 -51.93 -0.39 0.68 16 32 H 0.17 2.65 8.06 -52.48 -0.42 2.23 16 33 H 0.16 3.09 5.92 -52.49 -0.31 2.78 16 34 H 0.42 7.04 7.47 -40.82 -0.31 6.73 16 35 H 0.09 0.79 7.72 -51.93 -0.40 0.39 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.30 8.12 -51.93 -0.42 -0.12 16 38 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.31 6.40 -51.93 -0.33 -0.02 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.14 1.41 7.60 -51.93 -0.39 1.02 16 42 H 0.10 0.45 6.18 -51.93 -0.32 0.13 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -36.94 367.81 -8.81 -45.75 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.22 Total: 8.11 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -3.96 Total: -0.40 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.35 Total: -57.81 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.15 Total: -17.11 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.94 -8.81 -45.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933101958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.626 kcal (2) G-P(sol) polarization free energy of solvation -36.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds