Wall clock time and date at job start Tue Mar 31 2020 16:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48502 * 109.47219 * 270.00216 * 3 2 1 5 5 H 1.48501 * 109.47004 * 29.99882 * 3 2 1 6 6 H 1.48496 * 109.47319 * 150.00004 * 3 2 1 7 7 C 1.37877 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00397 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99430 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.46811 * 180.02562 * 9 7 2 11 11 C 1.34958 * 125.98122 * 125.02005 * 10 9 7 12 12 C 1.35243 * 107.86549 * 179.69192 * 11 10 9 13 13 C 1.40408 * 107.86481 * 0.42511 * 12 11 10 14 14 N 1.40152 * 125.97124 * 179.83129 * 13 12 11 15 15 C 1.34780 * 120.00344 * 359.71420 * 14 13 12 16 16 O 1.21294 * 119.99472 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00229 * 180.02562 * 15 14 13 18 18 H 1.09001 * 109.40314 * 300.00290 * 17 15 14 19 19 C 1.53064 * 109.33150 * 180.21807 * 17 15 14 20 20 C 1.53329 * 108.43651 * 191.02831 * 19 17 15 21 21 C 1.52916 * 108.69017 * 67.50367 * 20 19 17 22 22 N 1.45752 * 110.48758 * 309.25746 * 21 20 19 23 23 C 1.46500 * 117.94646 * 199.07171 * 22 21 20 24 24 C 1.53004 * 117.49835 * 3.05987 * 23 22 21 25 25 C 1.52999 * 60.00061 * 252.50901 * 24 23 22 26 26 C 1.33357 * 124.10615 * 19.09950 * 22 21 20 27 27 O 1.21279 * 118.24314 * 177.75316 * 26 22 21 28 28 N 1.31222 * 108.05222 * 359.57015 * 13 12 11 29 29 H 0.97003 * 119.99908 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47017 * 60.00721 * 9 7 2 31 31 H 1.09001 * 109.47307 * 300.00088 * 9 7 2 32 32 H 1.08007 * 126.06811 * 359.97438 * 11 10 9 33 33 H 1.08001 * 126.06498 * 180.26149 * 12 11 10 34 34 H 0.97002 * 120.00210 * 179.71988 * 14 13 12 35 35 H 1.09006 * 109.67160 * 310.74666 * 19 17 15 36 36 H 1.08998 * 109.67681 * 71.28125 * 19 17 15 37 37 H 1.09000 * 109.58612 * 307.74758 * 20 19 17 38 38 H 1.09001 * 109.73981 * 187.35142 * 20 19 17 39 39 H 1.09003 * 109.30266 * 188.94393 * 21 20 19 40 40 H 1.08998 * 109.13292 * 69.46752 * 21 20 19 41 41 H 1.09001 * 115.54785 * 148.76712 * 23 22 21 42 42 H 1.08997 * 117.50043 * 359.97438 * 24 23 22 43 43 H 1.09001 * 117.49578 * 145.02206 * 24 23 22 44 44 H 1.09001 * 117.50040 * 252.51078 * 25 24 23 45 45 H 1.08999 * 117.50231 * 107.48880 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 4.8546 -3.1142 -0.8945 12 6 5.0610 -4.4045 -0.5460 13 6 4.2955 -4.6686 0.6011 14 7 4.2253 -5.8926 1.2802 15 6 4.9309 -6.9514 0.8356 16 8 5.6271 -6.8447 -0.1519 17 6 4.8550 -8.2676 1.5655 18 1 5.1983 -8.1332 2.5913 19 6 5.7488 -9.2905 0.8601 20 6 5.4491 -10.6779 1.4399 21 6 4.0313 -11.0825 1.0345 22 7 3.0862 -10.0204 1.3556 23 6 1.6658 -10.3684 1.4425 24 6 1.2863 -11.8393 1.2598 25 6 0.9705 -10.8253 0.1585 26 6 3.4333 -8.7516 1.5747 27 8 2.5540 -7.9455 1.7934 28 7 3.6617 -3.5674 0.9294 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6798 0.8895 31 1 3.8745 -0.6808 -0.8905 32 1 5.2990 -2.6041 -1.7365 33 1 5.6992 -5.1078 -1.0603 34 1 3.6688 -5.9778 2.0701 35 1 5.5377 -9.2866 -0.2093 36 1 6.7963 -9.0406 1.0288 37 1 5.5230 -10.6434 2.5268 38 1 6.1625 -11.4028 1.0477 39 1 3.7488 -11.9897 1.5688 40 1 4.0073 -11.2741 -0.0382 41 1 1.0805 -9.7815 2.1504 42 1 2.0934 -12.5480 1.0744 43 1 0.4512 -12.2204 1.8476 44 1 -0.0724 -10.5393 0.0218 45 1 1.5698 -10.8669 -0.7510 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933101958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:32 Heat of formation + Delta-G solvation = 26.753241 kcal Electronic energy + Delta-G solvation = -28265.881378 eV Core-core repulsion = 24285.617892 eV Total energy + Delta-G solvation = -3980.263486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.52396 -41.90225 -40.36531 -38.39517 -37.09154 -36.18809 -35.20656 -33.61932 -32.98525 -31.17713 -30.94147 -29.03921 -26.64711 -24.82271 -24.26515 -23.41810 -23.11133 -22.38192 -21.67534 -21.05596 -19.53477 -19.13500 -18.54693 -18.26199 -18.12650 -17.77167 -17.09669 -16.48235 -16.42633 -16.06653 -15.73597 -15.47996 -15.25478 -15.10693 -14.87267 -14.74359 -14.39749 -14.37043 -13.88001 -13.85516 -13.62357 -13.02472 -13.02136 -12.65125 -12.53928 -12.41791 -12.32859 -12.25860 -12.01602 -11.85082 -11.67817 -11.63222 -11.49162 -11.45767 -11.04520 -10.89109 -10.84505 -9.80362 -9.60609 -9.14279 -8.39578 -6.50770 0.77066 1.11579 1.33385 1.37195 1.39335 1.46650 1.51583 1.77861 2.20436 2.27566 2.33167 2.84595 2.92615 3.28452 3.35280 3.64691 3.72186 3.78450 3.88549 3.95662 3.98423 4.10573 4.18206 4.22123 4.45816 4.56334 4.57261 4.69922 4.76213 4.82489 4.83522 4.86192 4.88073 4.98679 5.04259 5.07704 5.09683 5.15801 5.22021 5.33010 5.43621 5.84332 5.97881 6.13549 6.26839 6.39257 6.55325 6.88692 6.93543 7.03646 7.12236 8.78151 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.002625 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.188189 B =10663.308067 C =11842.796597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.961 3.039 4 H -0.250 1.250 5 H -0.280 1.280 6 H -0.238 1.238 7 C -0.551 4.551 8 H 0.020 0.980 9 C 0.240 3.760 10 N -0.344 5.344 11 C 0.062 3.938 12 C -0.294 4.294 13 C 0.261 3.739 14 N -0.618 5.618 15 C 0.534 3.466 16 O -0.534 6.534 17 C -0.108 4.108 18 H 0.163 0.837 19 C -0.102 4.102 20 C -0.125 4.125 21 C 0.094 3.906 22 N -0.563 5.563 23 C 0.043 3.957 24 C -0.145 4.145 25 C -0.201 4.201 26 C 0.518 3.482 27 O -0.581 6.581 28 N -0.352 5.352 29 H 0.273 0.727 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.215 0.785 33 H 0.172 0.828 34 H 0.420 0.580 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.126 0.874 43 H 0.119 0.881 44 H 0.097 0.903 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.590 -27.695 2.975 31.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.161 1.161 7 C -0.589 4.589 8 H 0.039 0.961 9 C 0.120 3.880 10 N -0.126 5.126 11 C -0.086 4.086 12 C -0.325 4.325 13 C 0.006 3.994 14 N -0.267 5.267 15 C 0.320 3.680 16 O -0.409 6.409 17 C -0.132 4.132 18 H 0.181 0.819 19 C -0.140 4.140 20 C -0.162 4.162 21 C -0.027 4.027 22 N -0.293 5.293 23 C -0.061 4.061 24 C -0.182 4.182 25 C -0.240 4.240 26 C 0.305 3.695 27 O -0.462 6.462 28 N -0.182 5.182 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.232 0.768 33 H 0.190 0.810 34 H 0.259 0.741 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.142 0.858 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.128 0.872 42 H 0.144 0.856 43 H 0.137 0.863 44 H 0.115 0.885 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.674 -26.483 3.212 29.977 hybrid contribution -0.620 0.715 -0.157 0.959 sum 13.055 -25.767 3.055 29.047 Atomic orbital electron populations 1.70072 1.08720 1.28893 1.50587 1.26004 0.95829 1.03766 0.93049 0.85546 0.79433 0.76735 0.80209 1.17452 1.20507 1.16130 1.21246 0.90674 0.93648 1.53310 0.96144 1.19906 0.94024 0.74288 0.99779 1.48555 1.34007 1.10140 1.19860 1.23306 0.94126 0.94643 0.96540 1.21768 1.11739 0.97414 1.01538 1.19606 0.97546 0.87239 0.95004 1.42808 1.46724 1.06510 1.30656 1.20621 0.78264 0.84751 0.84369 1.90610 1.40449 1.83890 1.25971 1.21539 0.94379 0.92101 1.05166 0.81947 1.21602 0.99783 0.92728 0.99893 1.21951 0.95288 0.96055 1.02909 1.21951 0.88673 0.90142 1.01935 1.46762 1.07295 1.07894 1.67357 1.21762 0.82614 0.99874 1.01857 1.23495 1.04307 0.89999 1.00439 1.23387 1.01889 1.04866 0.93855 1.19838 0.90413 0.82489 0.76728 1.90779 1.51038 1.53430 1.50942 1.77350 1.25792 0.97147 1.17958 0.91816 0.93549 0.89710 0.76795 0.81049 0.74147 0.91439 0.88127 0.89239 0.85845 0.87101 0.90774 0.87152 0.85581 0.86278 0.88473 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.40 13.96 21.45 0.30 -60.10 16 2 C 0.01 0.71 5.47 84.65 0.46 1.17 16 3 Si 0.96 42.05 27.47 68.60 1.88 43.94 16 4 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.24 -9.39 6.54 99.48 0.65 -8.74 16 7 C -0.55 -33.50 9.79 25.60 0.25 -33.25 16 8 H 0.02 1.46 8.06 -2.91 -0.02 1.44 16 9 C 0.24 11.67 5.33 85.63 0.46 12.13 16 10 N -0.34 -16.50 3.67 -351.84 -1.29 -17.79 16 11 C 0.06 2.43 11.43 83.52 0.96 3.38 16 12 C -0.29 -11.95 9.61 22.11 0.21 -11.74 16 13 C 0.26 11.64 8.11 133.33 1.08 12.72 16 14 N -0.62 -22.96 4.94 -307.51 -1.52 -24.48 16 15 C 0.53 16.45 7.03 87.66 0.62 17.06 16 16 O -0.53 -18.31 12.92 -3.07 -0.04 -18.35 16 17 C -0.11 -2.15 2.78 -12.43 -0.03 -2.19 16 18 H 0.16 2.25 8.14 -2.39 -0.02 2.23 16 19 C -0.10 -1.33 4.78 30.73 0.15 -1.18 16 20 C -0.12 -0.66 6.02 30.68 0.18 -0.48 16 21 C 0.09 0.76 5.53 86.49 0.48 1.23 16 22 N -0.56 -9.91 3.14 -802.63 -2.52 -12.43 16 23 C 0.04 0.79 5.91 44.99 0.27 1.06 16 24 C -0.15 -1.40 9.66 30.60 0.30 -1.11 16 25 C -0.20 -3.26 10.36 30.59 0.32 -2.94 16 26 C 0.52 12.65 7.03 87.71 0.62 13.26 16 27 O -0.58 -19.96 14.18 -3.03 -0.04 -20.00 16 28 N -0.35 -18.09 12.42 -54.45 -0.68 -18.76 16 29 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 30 H 0.05 2.20 7.20 -2.39 -0.02 2.19 16 31 H 0.09 3.50 7.50 -2.39 -0.02 3.49 16 32 H 0.22 6.05 8.06 -2.91 -0.02 6.03 16 33 H 0.17 6.53 5.92 -2.91 -0.02 6.51 16 34 H 0.42 15.21 7.47 -92.71 -0.69 14.52 16 35 H 0.07 1.15 7.72 -2.38 -0.02 1.13 16 36 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 0.32 8.12 -2.39 -0.02 0.30 16 38 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.11 0.33 6.40 -2.39 -0.02 0.31 16 40 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.11 2.54 7.60 -2.39 -0.02 2.52 16 42 H 0.13 0.60 6.18 -2.39 -0.01 0.58 16 43 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -89.02 367.81 2.68 -86.34 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.28 Total: 32.50 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 6.31 Total: 9.14 kcal Atomic # 7 Polarization: -127.86 SS G_CDS: -5.71 Total: -133.56 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -0.08 Total: -38.36 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.88 Total: 43.94 kcal Total: -89.02 2.68 -86.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933101958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.097 kcal (2) G-P(sol) polarization free energy of solvation -89.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds