Wall clock time and date at job start Tue Mar 31 2020 16:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86801 * 119.99916 * 2 1 4 4 H 1.48503 * 109.47049 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46995 * 119.99535 * 3 2 1 6 6 H 1.48495 * 109.46980 * 239.99861 * 3 2 1 7 7 C 1.40048 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99166 * 180.02562 * 7 2 1 9 9 C 1.46367 * 120.00295 * 359.97438 * 7 2 1 10 10 O 1.21693 * 120.00307 * 354.93890 * 9 7 2 11 11 N 1.34777 * 120.00050 * 174.93572 * 9 7 2 12 12 C 1.46964 * 120.59531 * 4.93325 * 11 9 7 13 13 C 1.53810 * 108.39924 * 124.75812 * 12 11 9 14 14 N 1.46964 * 108.57501 * 49.63947 * 13 12 11 15 15 C 1.34777 * 120.59223 * 124.67239 * 14 13 12 16 16 O 1.21625 * 120.00305 * 190.19250 * 15 14 13 17 17 C 1.47171 * 119.99865 * 10.18717 * 15 14 13 18 18 C 1.38400 * 126.88310 * 28.81206 * 17 15 14 19 19 C 1.39677 * 105.35699 * 179.97438 * 18 17 15 20 20 N 1.30862 * 107.86321 * 359.97438 * 19 18 17 21 21 N 1.28444 * 110.92350 * 359.71501 * 20 19 18 22 22 C 1.46501 * 125.18667 * 180.28300 * 21 20 19 23 23 C 1.53782 * 113.61640 * 43.91248 * 22 21 20 24 24 C 1.53952 * 87.01734 * 220.04718 * 23 22 21 25 25 C 1.53775 * 87.11550 * 25.35853 * 24 23 22 26 26 C 1.46959 * 118.81549 * 304.64425 * 14 13 12 27 27 C 1.46968 * 120.59557 * 185.21961 * 11 9 7 28 28 H 0.97001 * 120.00084 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.61482 * 244.54865 * 12 11 9 30 30 H 1.09007 * 109.60730 * 5.05212 * 12 11 9 31 31 H 1.08996 * 109.74054 * 289.85321 * 13 12 11 32 32 H 1.08994 * 109.53403 * 169.30780 * 13 12 11 33 33 H 1.08004 * 127.32392 * 359.97347 * 18 17 15 34 34 H 1.08001 * 126.06932 * 179.97438 * 19 18 17 35 35 H 1.09005 * 112.85152 * 175.10279 * 22 21 20 36 36 H 1.09010 * 113.61404 * 334.55984 * 23 22 21 37 37 H 1.08997 * 113.62148 * 105.46909 * 23 22 21 38 38 H 1.09005 * 113.53740 * 270.80570 * 24 23 22 39 39 H 1.09006 * 113.74662 * 139.93988 * 24 23 22 40 40 H 1.09003 * 113.61941 * 220.09408 * 25 24 23 41 41 H 1.09004 * 113.61479 * 89.18741 * 25 24 23 42 42 H 1.09001 * 109.61316 * 295.48664 * 26 14 13 43 43 H 1.09005 * 109.61271 * 174.97179 * 26 14 13 44 44 H 1.09001 * 109.60705 * 354.94303 * 27 11 9 45 45 H 1.08996 * 109.61321 * 115.45842 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2757 2.7465 -0.0006 5 1 3.0944 1.6965 1.2125 6 1 3.0944 1.6964 -1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0618 -2.4825 0.0951 11 7 1.9450 -3.6455 -0.1008 12 6 3.4145 -3.6654 -0.1058 13 6 3.8911 -4.6044 1.0152 14 7 3.1652 -5.8770 0.9002 15 6 3.8351 -7.0420 0.7977 16 8 3.2382 -8.0642 0.5181 17 6 5.2889 -7.0772 1.0239 18 6 6.0229 -6.2357 1.8415 19 6 7.3464 -6.6660 1.7223 20 7 7.3657 -7.6807 0.8962 21 7 6.1831 -7.9517 0.4747 22 6 5.8454 -9.0308 -0.4568 23 6 6.5535 -10.3594 -0.1431 24 6 6.7389 -10.5266 -1.6622 25 6 6.6571 -8.9943 -1.7624 26 6 1.6957 -5.8567 0.8996 27 6 1.2191 -4.9181 -0.2159 28 1 -0.4850 0.8400 -0.0004 29 1 3.7722 -4.0298 -1.0688 30 1 3.7946 -2.6592 0.0713 31 1 3.6861 -4.1528 1.9858 32 1 4.9613 -4.7829 0.9107 33 1 5.6514 -5.4198 2.4438 34 1 8.2019 -6.2373 2.2230 35 1 4.7717 -9.1347 -0.6130 36 1 7.4905 -10.2372 0.4003 37 1 5.8991 -11.1084 0.3028 38 1 5.9096 -11.0408 -2.1480 39 1 7.7111 -10.9313 -1.9439 40 1 6.0862 -8.6426 -2.6217 41 1 7.6225 -8.4980 -1.6625 42 1 1.3344 -5.4942 1.8619 43 1 1.3159 -6.8623 0.7186 44 1 0.1489 -4.7396 -0.1114 45 1 1.4241 -5.3698 -1.1865 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934790408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:05 Heat of formation + Delta-G solvation = 53.487186 kcal Electronic energy + Delta-G solvation = -29025.085589 eV Core-core repulsion = 25045.981374 eV Total energy + Delta-G solvation = -3979.104215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.74753 -39.83110 -38.73244 -37.94077 -35.95074 -33.28593 -32.53857 -31.94665 -31.72191 -30.23572 -27.55667 -26.20889 -26.06771 -25.64552 -23.59892 -23.27722 -21.98149 -21.40860 -20.32102 -19.30157 -18.84156 -17.64153 -16.81408 -16.11446 -16.06087 -15.85178 -15.80880 -15.46703 -14.91416 -14.61641 -14.56072 -14.21942 -14.14376 -13.79352 -13.59781 -13.05907 -12.95596 -12.88207 -12.65337 -12.53904 -12.00510 -11.69152 -11.54890 -11.47328 -11.23855 -11.09114 -11.06649 -10.99510 -10.93767 -10.82361 -10.64340 -10.31459 -10.15655 -9.96749 -9.26193 -9.01401 -8.96050 -8.73710 -7.69870 -7.30987 -6.28533 -4.74781 1.22758 2.19763 2.50971 3.00134 3.08626 3.10036 3.15762 3.16887 4.00680 4.02268 4.16666 4.29591 4.42288 4.43760 4.47307 4.48275 4.69754 5.01038 5.19658 5.25174 5.26899 5.33740 5.39013 5.42006 5.48906 5.52108 5.54323 5.56001 5.59345 5.61910 5.67953 5.83167 5.88893 5.98363 6.01639 6.23799 6.30940 6.40357 6.46314 6.62419 6.65416 7.34858 7.37062 7.45044 7.94373 8.00160 8.06847 8.22140 8.92838 9.30035 10.47153 10.65634 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019398 B = 0.002915 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.115893 B = 9603.693645 C =10247.275021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.575 6.575 11 N -0.643 5.643 12 C 0.110 3.890 13 C 0.075 3.925 14 N -0.586 5.586 15 C 0.589 3.411 16 O -0.549 6.549 17 C -0.030 4.030 18 C -0.194 4.194 19 C -0.004 4.004 20 N -0.279 5.279 21 N -0.247 5.247 22 C 0.113 3.887 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.143 4.143 26 C 0.101 3.899 27 C 0.108 3.892 28 H 0.270 0.730 29 H 0.046 0.954 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.165 0.835 34 H 0.186 0.814 35 H 0.145 0.855 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.089 -14.769 0.659 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.458 6.458 11 N -0.382 5.382 12 C -0.015 4.015 13 C -0.049 4.049 14 N -0.318 5.318 15 C 0.375 3.625 16 O -0.428 6.428 17 C -0.158 4.158 18 C -0.222 4.222 19 C -0.180 4.180 20 N -0.111 5.111 21 N -0.034 5.034 22 C 0.012 3.988 23 C -0.176 4.176 24 C -0.174 4.174 25 C -0.181 4.181 26 C -0.022 4.022 27 C -0.017 4.017 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.126 0.874 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.182 0.818 34 H 0.203 0.797 35 H 0.163 0.837 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.114 0.886 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.543 -16.048 -0.044 21.657 hybrid contribution 0.041 1.524 0.496 1.603 sum 14.584 -14.524 0.453 20.588 Atomic orbital electron populations 1.69994 1.07107 1.27590 1.34786 1.25728 0.94627 1.00346 0.92526 0.86439 0.79868 0.81020 0.79514 1.20530 1.19146 1.19225 1.20908 0.93490 0.89172 1.54572 0.90905 1.18283 0.86944 0.82098 0.76133 1.90602 1.14343 1.85894 1.54914 1.48213 1.04426 1.05853 1.79715 1.21900 0.83242 1.00477 0.95901 1.22895 0.97324 0.83543 1.01103 1.47784 1.07538 1.05784 1.70720 1.16995 0.84412 0.83729 0.77322 1.90740 1.69399 1.33303 1.49378 1.21473 0.92601 0.97321 1.04421 1.22418 0.93319 1.02511 1.03980 1.23575 0.97855 0.96118 1.00460 1.73054 1.05162 1.18245 1.14651 1.45764 1.02694 1.22847 1.32136 1.23703 1.02428 0.84425 0.88214 1.23342 1.01607 0.95070 0.97562 1.22722 1.03113 0.95781 0.95815 1.23378 1.01190 0.97370 0.96136 1.22187 0.77709 1.01614 1.00655 1.21504 0.99325 0.85096 0.95782 0.91906 0.93528 0.87437 0.90406 0.88195 0.81753 0.79702 0.83746 0.88418 0.90328 0.89411 0.90163 0.90306 0.88584 0.90777 0.88793 0.88369 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.19 11.84 55.55 0.66 -21.53 16 2 C 0.09 2.34 5.50 -17.37 -0.10 2.25 16 3 Si 0.91 19.17 29.56 -169.99 -5.02 14.14 16 4 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.55 -14.43 8.87 -35.64 -0.32 -14.74 16 8 H 0.07 1.72 5.66 -52.48 -0.30 1.42 16 9 C 0.56 15.12 7.62 -12.99 -0.10 15.02 16 10 O -0.58 -17.88 14.45 5.20 0.08 -17.81 16 11 N -0.64 -13.81 2.94 -173.87 -0.51 -14.32 16 12 C 0.11 1.89 6.51 -3.37 -0.02 1.86 16 13 C 0.07 1.05 5.39 -3.37 -0.02 1.03 16 14 N -0.59 -8.92 2.95 -173.58 -0.51 -9.43 16 15 C 0.59 9.07 7.48 -12.63 -0.09 8.97 16 16 O -0.55 -9.50 14.47 5.26 0.08 -9.42 16 17 C -0.03 -0.40 6.33 -82.06 -0.52 -0.92 16 18 C -0.19 -2.21 8.60 -38.98 -0.34 -2.55 16 19 C 0.00 -0.05 12.03 -17.43 -0.21 -0.25 16 20 N -0.28 -3.44 11.14 30.59 0.34 -3.10 16 21 N -0.25 -3.18 3.46 -49.90 -0.17 -3.36 16 22 C 0.11 1.26 4.44 -67.12 -0.30 0.96 16 23 C -0.14 -1.23 7.76 -25.83 -0.20 -1.43 16 24 C -0.14 -0.99 8.09 -25.83 -0.21 -1.20 16 25 C -0.14 -1.29 7.80 -25.92 -0.20 -1.50 16 26 C 0.10 1.63 6.60 -3.60 -0.02 1.61 16 27 C 0.11 2.05 6.60 -3.59 -0.02 2.02 16 28 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.11 1.87 5.34 -51.92 -0.28 1.59 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.10 1.19 4.46 -51.93 -0.23 0.95 16 33 H 0.17 1.58 6.69 -52.48 -0.35 1.23 16 34 H 0.19 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.15 1.80 6.07 -51.93 -0.32 1.48 16 36 H 0.10 0.93 7.77 -51.92 -0.40 0.52 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.93 8.01 -51.93 -0.42 0.51 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.09 1.45 7.01 -51.93 -0.36 1.09 16 44 H 0.10 2.05 6.99 -51.93 -0.36 1.69 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -34.46 361.22 -8.25 -42.71 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.96 Total: 5.53 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: -2.67 Total: 11.14 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.20 Total: -51.74 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: 0.15 Total: -27.23 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.46 -8.25 -42.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934790408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.200 kcal (2) G-P(sol) polarization free energy of solvation -34.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds