Wall clock time and date at job start Tue Mar 31 2020 16:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86801 * 119.99916 * 2 1 4 4 H 1.48503 * 109.47049 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46995 * 119.99535 * 3 2 1 6 6 H 1.48495 * 109.46980 * 239.99861 * 3 2 1 7 7 C 1.40048 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99166 * 180.02562 * 7 2 1 9 9 C 1.46367 * 120.00295 * 359.97438 * 7 2 1 10 10 O 1.21693 * 120.00307 * 354.93890 * 9 7 2 11 11 N 1.34777 * 120.00050 * 174.93572 * 9 7 2 12 12 C 1.46964 * 120.59531 * 4.93325 * 11 9 7 13 13 C 1.53810 * 108.39924 * 124.75812 * 12 11 9 14 14 N 1.46964 * 108.57501 * 49.63947 * 13 12 11 15 15 C 1.34777 * 120.59223 * 124.67239 * 14 13 12 16 16 O 1.21625 * 120.00305 * 190.19250 * 15 14 13 17 17 C 1.47171 * 119.99865 * 10.18717 * 15 14 13 18 18 C 1.38400 * 126.88310 * 28.81206 * 17 15 14 19 19 C 1.39677 * 105.35699 * 179.97438 * 18 17 15 20 20 N 1.30862 * 107.86321 * 359.97438 * 19 18 17 21 21 N 1.28444 * 110.92350 * 359.71501 * 20 19 18 22 22 C 1.46501 * 125.18667 * 180.28300 * 21 20 19 23 23 C 1.53782 * 113.61640 * 43.91248 * 22 21 20 24 24 C 1.53952 * 87.01734 * 220.04718 * 23 22 21 25 25 C 1.53775 * 87.11550 * 25.35853 * 24 23 22 26 26 C 1.46959 * 118.81549 * 304.64425 * 14 13 12 27 27 C 1.46968 * 120.59557 * 185.21961 * 11 9 7 28 28 H 0.97001 * 120.00084 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.61482 * 244.54865 * 12 11 9 30 30 H 1.09007 * 109.60730 * 5.05212 * 12 11 9 31 31 H 1.08996 * 109.74054 * 289.85321 * 13 12 11 32 32 H 1.08994 * 109.53403 * 169.30780 * 13 12 11 33 33 H 1.08004 * 127.32392 * 359.97347 * 18 17 15 34 34 H 1.08001 * 126.06932 * 179.97438 * 19 18 17 35 35 H 1.09005 * 112.85152 * 175.10279 * 22 21 20 36 36 H 1.09010 * 113.61404 * 334.55984 * 23 22 21 37 37 H 1.08997 * 113.62148 * 105.46909 * 23 22 21 38 38 H 1.09005 * 113.53740 * 270.80570 * 24 23 22 39 39 H 1.09006 * 113.74662 * 139.93988 * 24 23 22 40 40 H 1.09003 * 113.61941 * 220.09408 * 25 24 23 41 41 H 1.09004 * 113.61479 * 89.18741 * 25 24 23 42 42 H 1.09001 * 109.61316 * 295.48664 * 26 14 13 43 43 H 1.09005 * 109.61271 * 174.97179 * 26 14 13 44 44 H 1.09001 * 109.60705 * 354.94303 * 27 11 9 45 45 H 1.08996 * 109.61321 * 115.45842 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2757 2.7465 -0.0006 5 1 3.0944 1.6965 1.2125 6 1 3.0944 1.6964 -1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0618 -2.4825 0.0951 11 7 1.9450 -3.6455 -0.1008 12 6 3.4145 -3.6654 -0.1058 13 6 3.8911 -4.6044 1.0152 14 7 3.1652 -5.8770 0.9002 15 6 3.8351 -7.0420 0.7977 16 8 3.2382 -8.0642 0.5181 17 6 5.2889 -7.0772 1.0239 18 6 6.0229 -6.2357 1.8415 19 6 7.3464 -6.6660 1.7223 20 7 7.3657 -7.6807 0.8962 21 7 6.1831 -7.9517 0.4747 22 6 5.8454 -9.0308 -0.4568 23 6 6.5535 -10.3594 -0.1431 24 6 6.7389 -10.5266 -1.6622 25 6 6.6571 -8.9943 -1.7624 26 6 1.6957 -5.8567 0.8996 27 6 1.2191 -4.9181 -0.2159 28 1 -0.4850 0.8400 -0.0004 29 1 3.7722 -4.0298 -1.0688 30 1 3.7946 -2.6592 0.0713 31 1 3.6861 -4.1528 1.9858 32 1 4.9613 -4.7829 0.9107 33 1 5.6514 -5.4198 2.4438 34 1 8.2019 -6.2373 2.2230 35 1 4.7717 -9.1347 -0.6130 36 1 7.4905 -10.2372 0.4003 37 1 5.8991 -11.1084 0.3028 38 1 5.9096 -11.0408 -2.1480 39 1 7.7111 -10.9313 -1.9439 40 1 6.0862 -8.6426 -2.6217 41 1 7.6225 -8.4980 -1.6625 42 1 1.3344 -5.4942 1.8619 43 1 1.3159 -6.8623 0.7186 44 1 0.1489 -4.7396 -0.1114 45 1 1.4241 -5.3698 -1.1865 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934790408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:04 Heat of formation + Delta-G solvation = 30.793027 kcal Electronic energy + Delta-G solvation = -29026.069682 eV Core-core repulsion = 25045.981374 eV Total energy + Delta-G solvation = -3980.088308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.65692 -41.13964 -39.61506 -39.46325 -37.59173 -34.93964 -34.51187 -33.08466 -32.73515 -31.40748 -29.19952 -27.91899 -26.77173 -26.47092 -25.00434 -24.54602 -22.94756 -22.73041 -21.48759 -20.58211 -19.88915 -19.00879 -18.04424 -17.91991 -17.32526 -17.02671 -16.81602 -16.55632 -16.22700 -16.12124 -15.88143 -15.75431 -15.42474 -14.90618 -14.63501 -14.44589 -14.20047 -13.89139 -13.61895 -13.55588 -13.47058 -13.27741 -13.14164 -12.85711 -12.67936 -12.42198 -12.34225 -12.21528 -12.01919 -11.99209 -11.85950 -11.64739 -11.53826 -11.13522 -10.89845 -10.26532 -10.08954 -9.92121 -9.78347 -9.03172 -8.27701 -6.82754 0.21083 1.22883 1.44045 1.46621 1.58193 1.63736 1.90663 1.96705 2.26235 2.47583 2.78973 3.22821 3.28977 3.44249 3.60010 3.68812 3.74673 3.89673 3.91304 3.96198 4.12113 4.18957 4.30588 4.42785 4.45487 4.48290 4.59677 4.65227 4.67476 4.70581 4.75075 4.82596 4.85063 4.86326 4.93976 4.97897 5.02459 5.27542 5.31420 5.41234 5.59614 5.70742 5.78015 6.11534 6.14685 6.34506 6.81586 6.89664 7.10348 7.39049 8.46148 8.67978 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019398 B = 0.002915 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.115893 B = 9603.693645 C =10247.275021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.029 3.971 3 Si 0.994 3.006 4 H -0.281 1.281 5 H -0.249 1.249 6 H -0.254 1.254 7 C -0.565 4.565 8 H 0.100 0.900 9 C 0.542 3.458 10 O -0.630 6.630 11 N -0.645 5.645 12 C 0.106 3.894 13 C 0.086 3.914 14 N -0.588 5.588 15 C 0.591 3.409 16 O -0.574 6.574 17 C -0.058 4.058 18 C -0.184 4.184 19 C -0.001 4.001 20 N -0.289 5.289 21 N -0.253 5.253 22 C 0.096 3.904 23 C -0.133 4.133 24 C -0.122 4.122 25 C -0.138 4.138 26 C 0.115 3.885 27 C 0.110 3.890 28 H 0.273 0.727 29 H 0.055 0.945 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.185 0.815 34 H 0.221 0.779 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.071 0.929 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.720 -14.571 1.070 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.186 4.186 3 Si 0.814 3.186 4 H -0.206 1.206 5 H -0.173 1.173 6 H -0.178 1.178 7 C -0.601 4.601 8 H 0.118 0.882 9 C 0.349 3.651 10 O -0.517 6.517 11 N -0.382 5.382 12 C -0.018 4.018 13 C -0.036 4.036 14 N -0.320 5.320 15 C 0.379 3.621 16 O -0.454 6.454 17 C -0.187 4.187 18 C -0.213 4.213 19 C -0.176 4.176 20 N -0.121 5.121 21 N -0.040 5.040 22 C -0.004 4.004 23 C -0.171 4.171 24 C -0.160 4.160 25 C -0.176 4.176 26 C -0.009 4.009 27 C -0.015 4.015 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.147 0.853 33 H 0.202 0.798 34 H 0.237 0.763 35 H 0.144 0.856 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.090 0.910 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.240 -15.903 0.365 24.202 hybrid contribution -1.061 1.356 0.355 1.758 sum 17.180 -14.546 0.720 22.522 Atomic orbital electron populations 1.70186 1.09653 1.28976 1.36512 1.26990 0.95425 1.04987 0.91182 0.85114 0.78226 0.74778 0.80513 1.20578 1.17294 1.17777 1.21468 0.94980 0.89389 1.54310 0.88184 1.18701 0.86567 0.83992 0.75835 1.90555 1.16687 1.87188 1.57316 1.48055 1.06410 1.05215 1.78505 1.22114 0.80356 1.01572 0.97738 1.22894 0.98539 0.82199 1.00013 1.47768 1.06926 1.06370 1.70907 1.17230 0.85261 0.83150 0.76430 1.90726 1.70176 1.34121 1.50386 1.21391 0.91762 0.99085 1.06421 1.22720 0.93377 1.02194 1.02961 1.24198 0.98645 0.95204 0.99573 1.73070 1.04934 1.18947 1.15141 1.45945 1.02677 1.23007 1.32384 1.23868 1.01909 0.85311 0.89362 1.23319 1.01038 0.93894 0.98871 1.22713 1.04439 0.94474 0.94350 1.23352 1.00450 0.98815 0.95029 1.21920 0.78789 1.00957 0.99206 1.21515 0.97826 0.84791 0.97353 0.91682 0.92654 0.87388 0.89687 0.85326 0.79785 0.76286 0.85584 0.88823 0.90135 0.88387 0.88527 0.90251 0.89012 0.90932 0.88104 0.91043 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.17 11.84 21.84 0.26 -48.92 16 2 C 0.03 1.56 5.50 85.30 0.47 2.03 16 3 Si 0.99 38.75 29.56 68.60 2.03 40.77 16 4 H -0.28 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 6 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 7 C -0.57 -29.97 8.87 24.83 0.22 -29.75 16 8 H 0.10 4.56 5.66 -2.91 -0.02 4.55 16 9 C 0.54 30.17 7.62 86.36 0.66 30.83 16 10 O -0.63 -41.18 14.45 -4.32 -0.06 -41.25 16 11 N -0.64 -28.00 2.94 -822.22 -2.42 -30.42 16 12 C 0.11 3.48 6.51 86.56 0.56 4.05 16 13 C 0.09 2.22 5.39 86.56 0.47 2.69 16 14 N -0.59 -17.22 2.95 -821.34 -2.42 -19.64 16 15 C 0.59 17.64 7.48 86.59 0.65 18.29 16 16 O -0.57 -19.80 14.47 -4.11 -0.06 -19.86 16 17 C -0.06 -1.49 6.33 40.79 0.26 -1.23 16 18 C -0.18 -3.62 8.60 22.66 0.19 -3.42 16 19 C 0.00 -0.02 12.03 85.18 1.02 1.01 16 20 N -0.29 -6.45 11.14 -57.14 -0.64 -7.08 16 21 N -0.25 -6.13 3.46 -311.80 -1.08 -7.21 16 22 C 0.10 2.07 4.44 45.52 0.20 2.27 16 23 C -0.13 -2.22 7.76 31.18 0.24 -1.98 16 24 C -0.12 -1.53 8.09 31.18 0.25 -1.28 16 25 C -0.14 -2.33 7.80 31.12 0.24 -2.09 16 26 C 0.11 3.72 6.60 86.42 0.57 4.29 16 27 C 0.11 4.29 6.60 86.42 0.57 4.86 16 28 H 0.27 14.89 8.29 -92.71 -0.77 14.12 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.11 3.54 5.34 -2.38 -0.01 3.53 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.13 2.62 4.46 -2.39 -0.01 2.61 16 33 H 0.19 2.79 6.69 -2.91 -0.02 2.77 16 34 H 0.22 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.13 3.17 6.07 -2.38 -0.01 3.16 16 36 H 0.09 1.65 7.77 -2.38 -0.02 1.63 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 38 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 1.64 8.01 -2.39 -0.02 1.62 16 42 H 0.07 2.38 8.14 -2.39 -0.02 2.37 16 43 H 0.10 3.15 7.01 -2.38 -0.02 3.13 16 44 H 0.07 3.18 6.99 -2.39 -0.02 3.16 16 45 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -78.08 361.22 3.22 -74.86 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 1.03 Total: 28.19 kcal Atomic # 6 Polarization: 23.97 SS G_CDS: 6.58 Total: 30.55 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -6.30 Total: -113.28 kcal Atomic # 8 Polarization: -60.98 SS G_CDS: -0.12 Total: -61.10 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.77 kcal Total: -78.08 3.22 -74.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934790408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.652 kcal (2) G-P(sol) polarization free energy of solvation -78.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds