Wall clock time and date at job start Tue Mar 31 2020 16:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00219 * 2 1 4 4 H 1.48506 * 109.46739 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47107 * 120.00179 * 3 2 1 6 6 H 1.48508 * 109.46996 * 240.00462 * 3 2 1 7 7 C 1.38816 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99726 * 212.38048 * 7 2 1 9 9 N 1.36938 * 120.00162 * 32.37359 * 7 2 1 10 10 C 1.46934 * 120.63840 * 25.89628 * 9 7 2 11 11 C 1.53621 * 108.53417 * 126.29543 * 10 9 7 12 12 C 1.52999 * 109.27788 * 54.80522 * 11 10 9 13 13 C 1.52982 * 109.62927 * 298.65891 * 12 11 10 14 14 C 1.46930 * 120.64339 * 206.17585 * 9 7 2 15 15 C 1.53251 * 109.36258 * 178.71047 * 12 11 10 16 16 N 1.47151 * 108.41245 * 187.91230 * 15 12 11 17 17 C 1.34775 * 120.99100 * 230.45672 * 16 15 12 18 18 O 1.21515 * 120.00016 * 356.89155 * 17 16 15 19 19 C 1.48136 * 120.00150 * 176.88636 * 17 16 15 20 20 C 1.40112 * 121.14599 * 212.34326 * 19 17 16 21 21 C 1.38503 * 117.82461 * 179.97438 * 20 19 17 22 22 N 1.31924 * 119.96612 * 359.97438 * 21 20 19 23 23 N 1.28277 * 122.51936 * 0.02562 * 22 21 20 24 24 C 1.31930 * 122.32092 * 359.71959 * 23 22 21 25 25 C 1.47160 * 118.02037 * 50.47388 * 16 15 12 26 26 C 1.53298 * 108.37623 * 309.40762 * 25 16 15 27 27 O 1.42894 * 109.54368 * 58.91181 * 12 11 10 28 28 H 0.97000 * 119.99921 * 185.72436 * 1 2 3 29 29 H 1.09008 * 109.58455 * 246.12453 * 10 9 7 30 30 H 1.08999 * 109.58941 * 6.55116 * 10 9 7 31 31 H 1.08999 * 109.63196 * 294.80107 * 11 10 9 32 32 H 1.09004 * 109.44630 * 174.69097 * 11 10 9 33 33 H 1.08994 * 109.49293 * 301.23968 * 13 12 11 34 34 H 1.09005 * 109.50604 * 181.18196 * 13 12 11 35 35 H 1.09001 * 109.58907 * 353.43382 * 14 9 7 36 36 H 1.08999 * 109.58599 * 113.72407 * 14 9 7 37 37 H 1.08996 * 109.67975 * 307.64647 * 15 12 11 38 38 H 1.09005 * 109.67458 * 68.18712 * 15 12 11 39 39 H 1.08002 * 121.08841 * 359.97438 * 20 19 17 40 40 H 1.07998 * 120.02062 * 179.97438 * 21 20 19 41 41 H 1.07998 * 120.17006 * 180.28200 * 24 23 22 42 42 H 1.08997 * 109.68287 * 69.13546 * 25 16 15 43 43 H 1.09007 * 109.67832 * 189.68847 * 25 16 15 44 44 H 1.08999 * 109.50909 * 172.27560 * 26 25 16 45 45 H 1.08996 * 109.51207 * 292.37599 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1040 1.6963 1.2124 6 1 3.1039 1.6964 -1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 2.9643 -1.2751 0.5003 9 7 1.4852 -2.2957 -0.6360 10 6 0.5457 -2.1326 -1.7540 11 6 1.0750 -2.9285 -2.9566 12 6 1.3077 -4.3816 -2.5378 13 6 2.3563 -4.4341 -1.4251 14 6 1.8456 -3.6546 -0.2092 15 6 1.8052 -5.1847 -3.7445 16 7 1.8397 -6.6082 -3.3732 17 6 2.9414 -7.3546 -3.5870 18 8 3.9056 -6.8689 -4.1445 19 6 2.9768 -8.7671 -3.1421 20 6 4.1716 -9.3637 -2.7181 21 6 4.1257 -10.6883 -2.3162 22 7 2.9819 -11.3451 -2.3405 23 7 1.8846 -10.8049 -2.7275 24 6 1.8187 -9.5487 -3.1252 25 6 0.6354 -7.1925 -2.7618 26 6 0.1973 -6.2922 -1.6010 27 8 0.0821 -4.9456 -2.0672 28 1 -0.4850 -0.8359 0.0838 29 1 -0.4351 -2.5107 -1.4651 30 1 0.4701 -1.0775 -2.0168 31 1 2.0142 -2.4938 -3.2988 32 1 0.3434 -2.8955 -3.7640 33 1 3.2853 -3.9876 -1.7794 34 1 2.5359 -5.4715 -1.1429 35 1 2.6284 -3.6044 0.5477 36 1 0.9686 -4.1523 0.2046 37 1 1.1272 -5.0412 -4.5857 38 1 2.8066 -4.8526 -4.0188 39 1 5.0980 -8.8087 -2.7052 40 1 5.0259 -11.1833 -1.9831 41 1 0.8751 -9.1278 -3.4397 42 1 -0.1616 -7.2499 -3.5030 43 1 0.8616 -8.1909 -2.3871 44 1 -0.7672 -6.6302 -1.2222 45 1 0.9387 -6.3399 -0.8034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949200277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:35 Heat of formation + Delta-G solvation = 38.505135 kcal Electronic energy + Delta-G solvation = -29781.250398 eV Core-core repulsion = 25801.496513 eV Total energy + Delta-G solvation = -3979.753885 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.89411 -40.62490 -38.98736 -36.59708 -35.11662 -33.86006 -33.34323 -32.88657 -31.27313 -29.97016 -29.07845 -27.53981 -25.49286 -25.36304 -24.01733 -23.54089 -22.46783 -21.40587 -20.01488 -19.21722 -18.61554 -17.76522 -17.46645 -17.22428 -16.46807 -15.91148 -15.76790 -15.44971 -15.27628 -14.85923 -14.74105 -14.19277 -14.12969 -13.95240 -13.72936 -13.60706 -13.48432 -13.37667 -12.47256 -12.16091 -12.08444 -11.83461 -11.66231 -11.41480 -11.06517 -10.96683 -10.75642 -10.71424 -10.61663 -10.54100 -10.47584 -10.36134 -10.20026 -10.00603 -9.88723 -9.62296 -9.39506 -8.72397 -8.29502 -6.91230 -6.13125 -3.18577 -0.11551 0.31536 2.20261 2.39685 3.05685 3.49361 3.52546 3.53466 3.69354 3.71301 3.75795 3.87935 4.01504 4.34039 4.48375 4.57070 4.61128 4.74001 4.83560 4.85397 5.00619 5.04386 5.15736 5.21047 5.25441 5.37397 5.46480 5.50362 5.55509 5.58668 5.66529 5.81140 5.99114 6.06887 6.11537 6.27278 6.34513 6.39863 6.59196 6.78636 6.86285 7.00604 7.20928 7.33309 7.59479 8.01305 8.11875 8.55928 9.10414 9.84366 10.30750 11.16572 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024623 B = 0.002974 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.893609 B = 9411.593894 C = 9617.139821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.019 4.019 3 Si 1.055 2.945 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.359 4.359 8 H 0.055 0.945 9 N -0.596 5.596 10 C 0.160 3.840 11 C -0.121 4.121 12 C 0.117 3.883 13 C -0.153 4.153 14 C 0.154 3.846 15 C 0.090 3.910 16 N -0.597 5.597 17 C 0.563 3.437 18 O -0.521 6.521 19 C -0.125 4.125 20 C -0.061 4.061 21 C 0.042 3.958 22 N -0.230 5.230 23 N -0.240 5.240 24 C 0.050 3.950 25 C 0.041 3.959 26 C 0.044 3.956 27 O -0.355 6.355 28 H 0.269 0.731 29 H 0.027 0.973 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.018 0.982 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.162 0.838 40 H 0.182 0.818 41 H 0.192 0.808 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 -19.163 -7.153 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.222 4.222 3 Si 0.885 3.115 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.488 4.488 8 H 0.073 0.927 9 N -0.319 5.319 10 C 0.034 3.966 11 C -0.161 4.161 12 C 0.077 3.923 13 C -0.192 4.192 14 C 0.028 3.972 15 C -0.032 4.032 16 N -0.329 5.329 17 C 0.349 3.651 18 O -0.397 6.397 19 C -0.140 4.140 20 C -0.091 4.091 21 C -0.122 4.122 22 N -0.072 5.072 23 N -0.081 5.081 24 C -0.113 4.113 25 C -0.081 4.081 26 C -0.034 4.034 27 O -0.274 6.274 28 H 0.080 0.920 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.036 0.964 37 H 0.097 0.903 38 H 0.121 0.879 39 H 0.180 0.820 40 H 0.199 0.801 41 H 0.209 0.791 42 H 0.107 0.893 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.994 -18.527 -7.223 20.110 hybrid contribution 1.253 -0.611 -0.147 1.402 sum 4.248 -19.139 -7.370 20.944 Atomic orbital electron populations 1.70780 1.06848 1.30230 1.46310 1.25738 0.96189 1.01383 0.98888 0.83682 0.75122 0.76457 0.76288 1.21140 1.22017 1.22052 1.19894 1.02184 0.90526 1.36204 0.92722 1.44128 1.53385 1.00521 1.33908 1.20895 0.91570 0.98793 0.85356 1.22152 1.01993 0.91511 1.00412 1.21776 0.84839 0.93873 0.91787 1.22520 0.98706 0.99591 0.98386 1.20742 0.97014 0.86618 0.92830 1.22596 1.04204 0.78192 0.98212 1.47996 1.13114 1.11309 1.60525 1.17921 0.82839 0.84682 0.79673 1.90824 1.34634 1.72356 1.41902 1.21210 0.95574 0.96189 1.01018 1.22626 0.98884 0.95613 0.91946 1.24426 0.99144 0.92351 0.96288 1.72904 0.95566 1.30596 1.08109 1.73156 1.18528 1.09080 1.07321 1.25159 0.99151 0.91845 0.95186 1.23400 0.87658 0.99232 0.97858 1.22919 1.02733 0.83194 0.94548 1.88084 1.31318 1.25794 1.82159 0.92035 0.95542 0.90459 0.90604 0.91988 0.91143 0.93160 0.92956 0.96368 0.90290 0.87944 0.82011 0.80067 0.79130 0.89289 0.87534 0.87615 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 12.49 55.49 0.69 -26.00 16 2 C -0.02 -0.52 4.47 -17.43 -0.08 -0.60 16 3 Si 1.05 24.90 30.02 -169.99 -5.10 19.80 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.36 -9.93 9.42 -15.06 -0.14 -10.07 16 8 H 0.05 1.53 8.00 -52.49 -0.42 1.11 16 9 N -0.60 -14.63 2.85 -172.04 -0.49 -15.12 16 10 C 0.16 3.64 4.68 -3.48 -0.02 3.62 16 11 C -0.12 -2.16 5.12 -26.41 -0.14 -2.29 16 12 C 0.12 1.83 0.68 -90.50 -0.06 1.77 16 13 C -0.15 -2.60 4.33 -26.64 -0.12 -2.71 16 14 C 0.15 3.21 6.28 -3.71 -0.02 3.19 16 15 C 0.09 1.18 5.28 -3.56 -0.02 1.17 16 16 N -0.60 -6.83 2.52 -173.30 -0.44 -7.26 16 17 C 0.56 6.81 7.52 -12.20 -0.09 6.72 16 18 O -0.52 -7.96 16.36 5.35 0.09 -7.87 16 19 C -0.13 -1.22 5.58 -104.57 -0.58 -1.81 16 20 C -0.06 -0.50 9.82 -38.78 -0.38 -0.88 16 21 C 0.04 0.31 11.30 -17.41 -0.20 0.11 16 22 N -0.23 -2.35 11.48 30.53 0.35 -2.00 16 23 N -0.24 -2.52 11.49 30.77 0.35 -2.17 16 24 C 0.05 0.44 8.83 -16.95 -0.15 0.29 16 25 C 0.04 0.36 5.13 -3.53 -0.02 0.35 16 26 C 0.04 0.50 6.60 37.31 0.25 0.74 16 27 O -0.36 -5.49 9.00 -35.23 -0.32 -5.81 16 28 H 0.27 8.09 7.37 -40.82 -0.30 7.79 16 29 H 0.03 0.63 7.74 -51.92 -0.40 0.23 16 30 H 0.08 1.97 6.40 -51.93 -0.33 1.64 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.05 0.77 6.16 -51.93 -0.32 0.45 16 35 H 0.05 1.11 7.93 -51.93 -0.41 0.69 16 36 H 0.02 0.39 7.83 -51.93 -0.41 -0.02 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.10 1.46 7.10 -51.93 -0.37 1.10 16 39 H 0.16 1.11 8.05 -52.49 -0.42 0.69 16 40 H 0.18 0.68 8.06 -52.49 -0.42 0.25 16 41 H 0.19 1.22 5.30 -52.49 -0.28 0.94 16 42 H 0.09 0.65 8.13 -51.93 -0.42 0.23 16 43 H 0.11 0.77 3.67 -51.94 -0.19 0.57 16 44 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.06 0.73 6.29 -51.93 -0.33 0.41 16 LS Contribution 351.28 15.07 5.29 5.29 Total: -1.00 -33.75 351.28 -7.27 -41.02 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.93 Total: 0.51 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.76 Total: -0.39 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.47 Total: -52.55 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.23 Total: -13.68 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.10 Total: 19.80 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.75 -7.27 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949200277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.527 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds