Wall clock time and date at job start Tue Mar 31 2020 16:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00219 * 2 1 4 4 H 1.48506 * 109.46739 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47107 * 120.00179 * 3 2 1 6 6 H 1.48508 * 109.46996 * 240.00462 * 3 2 1 7 7 C 1.38816 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99726 * 212.38048 * 7 2 1 9 9 N 1.36938 * 120.00162 * 32.37359 * 7 2 1 10 10 C 1.46934 * 120.63840 * 25.89628 * 9 7 2 11 11 C 1.53621 * 108.53417 * 126.29543 * 10 9 7 12 12 C 1.52999 * 109.27788 * 54.80522 * 11 10 9 13 13 C 1.52982 * 109.62927 * 298.65891 * 12 11 10 14 14 C 1.46930 * 120.64339 * 206.17585 * 9 7 2 15 15 C 1.53251 * 109.36258 * 178.71047 * 12 11 10 16 16 N 1.47151 * 108.41245 * 187.91230 * 15 12 11 17 17 C 1.34775 * 120.99100 * 230.45672 * 16 15 12 18 18 O 1.21515 * 120.00016 * 356.89155 * 17 16 15 19 19 C 1.48136 * 120.00150 * 176.88636 * 17 16 15 20 20 C 1.40112 * 121.14599 * 212.34326 * 19 17 16 21 21 C 1.38503 * 117.82461 * 179.97438 * 20 19 17 22 22 N 1.31924 * 119.96612 * 359.97438 * 21 20 19 23 23 N 1.28277 * 122.51936 * 0.02562 * 22 21 20 24 24 C 1.31930 * 122.32092 * 359.71959 * 23 22 21 25 25 C 1.47160 * 118.02037 * 50.47388 * 16 15 12 26 26 C 1.53298 * 108.37623 * 309.40762 * 25 16 15 27 27 O 1.42894 * 109.54368 * 58.91181 * 12 11 10 28 28 H 0.97000 * 119.99921 * 185.72436 * 1 2 3 29 29 H 1.09008 * 109.58455 * 246.12453 * 10 9 7 30 30 H 1.08999 * 109.58941 * 6.55116 * 10 9 7 31 31 H 1.08999 * 109.63196 * 294.80107 * 11 10 9 32 32 H 1.09004 * 109.44630 * 174.69097 * 11 10 9 33 33 H 1.08994 * 109.49293 * 301.23968 * 13 12 11 34 34 H 1.09005 * 109.50604 * 181.18196 * 13 12 11 35 35 H 1.09001 * 109.58907 * 353.43382 * 14 9 7 36 36 H 1.08999 * 109.58599 * 113.72407 * 14 9 7 37 37 H 1.08996 * 109.67975 * 307.64647 * 15 12 11 38 38 H 1.09005 * 109.67458 * 68.18712 * 15 12 11 39 39 H 1.08002 * 121.08841 * 359.97438 * 20 19 17 40 40 H 1.07998 * 120.02062 * 179.97438 * 21 20 19 41 41 H 1.07998 * 120.17006 * 180.28200 * 24 23 22 42 42 H 1.08997 * 109.68287 * 69.13546 * 25 16 15 43 43 H 1.09007 * 109.67832 * 189.68847 * 25 16 15 44 44 H 1.08999 * 109.50909 * 172.27560 * 26 25 16 45 45 H 1.08996 * 109.51207 * 292.37599 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1040 1.6963 1.2124 6 1 3.1039 1.6964 -1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 2.9643 -1.2751 0.5003 9 7 1.4852 -2.2957 -0.6360 10 6 0.5457 -2.1326 -1.7540 11 6 1.0750 -2.9285 -2.9566 12 6 1.3077 -4.3816 -2.5378 13 6 2.3563 -4.4341 -1.4251 14 6 1.8456 -3.6546 -0.2092 15 6 1.8052 -5.1847 -3.7445 16 7 1.8397 -6.6082 -3.3732 17 6 2.9414 -7.3546 -3.5870 18 8 3.9056 -6.8689 -4.1445 19 6 2.9768 -8.7671 -3.1421 20 6 4.1716 -9.3637 -2.7181 21 6 4.1257 -10.6883 -2.3162 22 7 2.9819 -11.3451 -2.3405 23 7 1.8846 -10.8049 -2.7275 24 6 1.8187 -9.5487 -3.1252 25 6 0.6354 -7.1925 -2.7618 26 6 0.1973 -6.2922 -1.6010 27 8 0.0821 -4.9456 -2.0672 28 1 -0.4850 -0.8359 0.0838 29 1 -0.4351 -2.5107 -1.4651 30 1 0.4701 -1.0775 -2.0168 31 1 2.0142 -2.4938 -3.2988 32 1 0.3434 -2.8955 -3.7640 33 1 3.2853 -3.9876 -1.7794 34 1 2.5359 -5.4715 -1.1429 35 1 2.6284 -3.6044 0.5477 36 1 0.9686 -4.1523 0.2046 37 1 1.1272 -5.0412 -4.5857 38 1 2.8066 -4.8526 -4.0188 39 1 5.0980 -8.8087 -2.7052 40 1 5.0259 -11.1833 -1.9831 41 1 0.8751 -9.1278 -3.4397 42 1 -0.1616 -7.2499 -3.5030 43 1 0.8616 -8.1909 -2.3871 44 1 -0.7672 -6.6302 -1.2222 45 1 0.9387 -6.3399 -0.8034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949200277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:34 Heat of formation + Delta-G solvation = 15.264359 kcal Electronic energy + Delta-G solvation = -29782.258194 eV Core-core repulsion = 25801.496513 eV Total energy + Delta-G solvation = -3980.761681 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.66952 -41.61283 -40.09136 -38.09708 -36.23162 -34.97791 -34.37069 -33.81284 -32.85021 -31.59896 -30.23811 -28.77220 -26.67790 -26.12649 -25.35247 -24.69588 -23.99017 -22.81067 -21.13927 -20.52280 -19.54838 -19.30002 -18.51070 -17.89520 -17.42677 -17.07527 -16.88372 -16.51351 -16.25872 -15.93894 -15.77279 -15.70584 -15.47524 -15.29438 -15.16830 -14.91663 -14.58971 -14.53333 -13.75129 -13.66314 -13.37050 -13.15325 -12.99817 -12.64902 -12.53136 -12.18206 -12.08847 -12.01960 -11.99246 -11.87871 -11.84525 -11.46791 -11.41104 -11.29652 -11.10833 -10.97977 -10.70609 -10.39924 -9.74109 -8.95414 -8.31799 -5.35545 -0.82091 -0.28857 1.32012 1.53249 1.58012 1.64469 1.84424 2.38096 2.63537 2.68484 2.87365 2.97073 3.14596 3.24060 3.42161 3.42578 3.59663 3.67104 3.72923 3.77012 3.79653 4.00813 4.12812 4.22427 4.26118 4.29767 4.45579 4.50416 4.54299 4.55395 4.60772 4.64618 4.75010 4.77066 4.79976 4.88968 4.98736 4.99563 5.07175 5.14103 5.16446 5.43571 5.83931 5.98237 6.20803 6.35600 6.68680 7.03788 7.46621 7.77685 8.23259 8.94233 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024623 B = 0.002974 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.893609 B = 9411.593894 C = 9617.139821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.067 4.067 3 Si 1.106 2.894 4 H -0.291 1.291 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.367 4.367 8 H 0.046 0.954 9 N -0.614 5.614 10 C 0.169 3.831 11 C -0.113 4.113 12 C 0.125 3.875 13 C -0.138 4.138 14 C 0.154 3.846 15 C 0.099 3.901 16 N -0.596 5.596 17 C 0.565 3.435 18 O -0.558 6.558 19 C -0.139 4.139 20 C -0.057 4.057 21 C 0.052 3.948 22 N -0.256 5.256 23 N -0.263 5.263 24 C 0.057 3.943 25 C 0.046 3.954 26 C 0.036 3.964 27 O -0.377 6.377 28 H 0.253 0.747 29 H 0.008 0.992 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.015 0.985 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.175 0.825 40 H 0.219 0.781 41 H 0.214 0.786 42 H 0.115 0.885 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.317 -21.033 -8.060 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.265 4.265 3 Si 0.931 3.069 4 H -0.217 1.217 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.496 4.496 8 H 0.064 0.936 9 N -0.338 5.338 10 C 0.043 3.957 11 C -0.152 4.152 12 C 0.085 3.915 13 C -0.177 4.177 14 C 0.028 3.972 15 C -0.023 4.023 16 N -0.328 5.328 17 C 0.353 3.647 18 O -0.436 6.436 19 C -0.153 4.153 20 C -0.087 4.087 21 C -0.112 4.112 22 N -0.097 5.097 23 N -0.103 5.103 24 C -0.107 4.107 25 C -0.075 4.075 26 C -0.041 4.041 27 O -0.296 6.296 28 H 0.062 0.938 29 H 0.026 0.974 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.033 0.967 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.192 0.808 40 H 0.235 0.765 41 H 0.230 0.770 42 H 0.133 0.867 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.671 -20.465 -8.123 22.321 hybrid contribution 1.043 -0.116 0.221 1.072 sum 4.713 -20.580 -7.902 22.543 Atomic orbital electron populations 1.70909 1.07721 1.29131 1.49020 1.27057 0.96248 1.04590 0.98602 0.82985 0.74127 0.72472 0.77317 1.21670 1.20349 1.20596 1.20109 1.01691 0.91881 1.35968 0.93647 1.44364 1.53609 1.01258 1.34594 1.20694 0.90760 0.97478 0.86766 1.21988 1.02183 0.92464 0.98614 1.21526 0.84687 0.93090 0.92235 1.22322 0.98503 0.99743 0.97148 1.20809 0.96491 0.85411 0.94443 1.22318 1.03805 0.79000 0.97173 1.48037 1.13872 1.10556 1.60334 1.18192 0.82187 0.85414 0.78890 1.90808 1.35909 1.73326 1.43604 1.21103 0.96773 0.95017 1.02399 1.22897 0.98936 0.95982 0.90873 1.24943 0.99468 0.91923 0.94860 1.72830 0.96341 1.31575 1.08923 1.73115 1.19124 1.09763 1.08289 1.25398 0.99655 0.91196 0.94420 1.23568 0.87240 0.99160 0.97526 1.23199 1.03971 0.81730 0.95233 1.88055 1.30866 1.28150 1.82495 0.93814 0.97397 0.93893 0.90830 0.89689 0.92250 0.91141 0.94028 0.96743 0.88505 0.89046 0.80796 0.76500 0.76955 0.86675 0.85521 0.85266 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 12.49 21.65 0.27 -56.30 16 2 C -0.07 -3.83 4.47 84.86 0.38 -3.45 16 3 Si 1.11 50.90 30.02 68.60 2.06 52.96 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.37 -20.80 9.42 84.03 0.79 -20.01 16 8 H 0.05 2.61 8.00 -2.91 -0.02 2.58 16 9 N -0.61 -30.98 2.85 -698.21 -1.99 -32.97 16 10 C 0.17 7.91 4.68 86.51 0.40 8.31 16 11 C -0.11 -3.99 5.12 30.80 0.16 -3.83 16 12 C 0.12 3.76 0.68 -10.72 -0.01 3.75 16 13 C -0.14 -4.61 4.33 30.65 0.13 -4.48 16 14 C 0.15 6.51 6.28 86.36 0.54 7.05 16 15 C 0.10 2.42 5.28 86.34 0.46 2.87 16 16 N -0.60 -12.07 2.52 -820.49 -2.07 -14.14 16 17 C 0.57 12.46 7.52 86.87 0.65 13.12 16 18 O -0.56 -16.25 16.36 -3.76 -0.06 -16.32 16 19 C -0.14 -2.36 5.58 -19.83 -0.11 -2.47 16 20 C -0.06 -0.79 9.82 22.79 0.22 -0.57 16 21 C 0.05 0.63 11.30 84.74 0.96 1.59 16 22 N -0.26 -4.67 11.48 -57.33 -0.66 -5.33 16 23 N -0.26 -4.94 11.49 -56.55 -0.65 -5.59 16 24 C 0.06 0.85 8.83 85.04 0.75 1.60 16 25 C 0.05 0.66 5.13 86.35 0.44 1.11 16 26 C 0.04 0.72 6.60 72.08 0.48 1.19 16 27 O -0.38 -11.05 9.00 -148.98 -1.34 -12.39 16 28 H 0.25 15.86 7.37 -92.71 -0.68 15.18 16 29 H 0.01 0.40 7.74 -2.38 -0.02 0.38 16 30 H 0.04 2.28 6.40 -2.39 -0.02 2.26 16 31 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.07 2.06 6.16 -2.38 -0.01 2.05 16 35 H 0.04 1.80 7.93 -2.39 -0.02 1.78 16 36 H 0.01 0.63 7.83 -2.39 -0.02 0.61 16 37 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.09 2.48 7.10 -2.38 -0.02 2.46 16 39 H 0.17 1.95 8.05 -2.91 -0.02 1.93 16 40 H 0.22 0.83 8.06 -2.91 -0.02 0.80 16 41 H 0.21 1.94 5.30 -2.91 -0.02 1.93 16 42 H 0.12 1.15 8.13 -2.39 -0.02 1.13 16 43 H 0.13 1.35 3.67 -2.40 -0.01 1.34 16 44 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.05 1.10 6.29 -2.39 -0.02 1.08 16 Total: -1.00 -75.95 351.28 2.92 -73.03 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.11 Total: 11.26 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 6.25 Total: 5.79 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -5.10 Total: -114.33 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -1.40 Total: -28.70 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.06 Total: 52.96 kcal Total: -75.95 2.92 -73.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949200277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.295 kcal (2) G-P(sol) polarization free energy of solvation -75.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds