Wall clock time and date at job start Tue Mar 31 2020 17:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38549 * 120.01556 * 2 1 4 4 C 1.40078 * 117.81692 * 180.23664 * 3 2 1 5 5 C 1.48138 * 121.14729 * 179.78925 * 4 3 2 6 6 O 1.21514 * 120.00085 * 187.04420 * 5 4 3 7 7 N 1.34775 * 119.99656 * 7.04144 * 5 4 3 8 8 C 1.47084 * 125.63217 * 355.09324 * 7 5 4 9 9 C 1.54463 * 107.29588 * 179.01885 * 8 7 5 10 10 C 1.54376 * 102.86977 * 338.49943 * 9 8 7 11 11 C 1.47583 * 125.62670 * 175.08711 * 7 5 4 12 12 C 1.52366 * 110.37155 * 152.42224 * 10 9 8 13 13 N 1.47332 * 108.40124 * 73.34321 * 12 10 9 14 14 C 1.36938 * 121.07722 * 229.21177 * 13 12 10 15 15 H 1.07999 * 119.99904 * 150.31753 * 14 13 12 16 16 C 1.38811 * 119.99929 * 330.30925 * 14 13 12 17 17 N 1.31619 * 120.00125 * 345.83334 * 16 14 13 18 18 Si 1.86805 * 119.99872 * 165.82952 * 16 14 13 19 19 H 1.48496 * 109.46800 * 60.00427 * 18 16 14 20 20 H 1.48503 * 109.46980 * 180.02562 * 18 16 14 21 21 H 1.48490 * 109.47082 * 300.00169 * 18 16 14 22 22 C 1.47167 * 117.84408 * 49.18825 * 13 12 10 23 23 C 1.53272 * 108.57558 * 308.79193 * 22 13 12 24 24 O 1.41888 * 110.71234 * 276.29065 * 10 9 8 25 25 C 1.39766 * 117.70646 * 359.51582 * 4 3 2 26 26 N 1.31892 * 119.65795 * 0.24643 * 25 4 3 27 27 N 1.28280 * 122.32959 * 0.02562 * 26 25 4 28 28 H 1.08997 * 109.47353 * 270.25485 * 1 2 3 29 29 H 1.09006 * 109.46754 * 30.25895 * 1 2 3 30 30 H 1.09005 * 109.46815 * 150.25735 * 1 2 3 31 31 H 1.07998 * 121.09345 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.88162 * 59.59792 * 8 7 5 33 33 H 1.09000 * 110.00814 * 298.51258 * 8 7 5 34 34 H 1.09005 * 110.73267 * 96.84617 * 9 8 7 35 35 H 1.09005 * 110.73186 * 220.15652 * 9 8 7 36 36 H 1.08997 * 110.37794 * 322.13317 * 11 7 5 37 37 H 1.09000 * 110.37313 * 84.36736 * 11 7 5 38 38 H 1.09002 * 109.67514 * 193.07399 * 12 10 9 39 39 H 1.09002 * 109.68059 * 313.57347 * 12 10 9 40 40 H 0.97007 * 119.99950 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.61693 * 68.51287 * 22 13 12 42 42 H 1.08992 * 109.62015 * 189.06031 * 22 13 12 43 43 H 1.09001 * 109.51125 * 172.89793 * 23 22 13 44 44 H 1.08999 * 109.51089 * 293.04343 * 23 22 13 45 45 H 1.08001 * 120.17216 * 180.22607 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5998 1.1459 -0.0051 5 6 4.4141 2.3834 -0.0101 6 8 5.6200 2.3167 -0.1436 7 7 3.8173 3.5833 0.1332 8 6 2.3666 3.8162 0.2007 9 6 2.1535 5.3341 0.3914 10 6 3.5072 5.8016 0.9677 11 6 4.5116 4.8805 0.2486 12 6 3.7629 7.2593 0.6052 13 7 2.8780 8.1047 1.4254 14 6 2.1158 9.0902 0.8571 15 1 1.1725 9.3684 1.3033 16 6 2.5558 9.7318 -0.2926 17 7 3.8071 9.6033 -0.6801 18 14 1.3719 10.7775 -1.2899 19 1 0.8497 11.8790 -0.4419 20 1 2.0828 11.3488 -2.4619 21 1 0.2423 9.9355 -1.7588 22 6 2.8392 7.8553 2.8753 23 6 2.5872 6.3614 3.1072 24 8 3.5511 5.6009 2.3717 25 6 4.2017 -0.1154 0.0006 26 7 3.4484 -1.1980 0.0055 27 7 2.1668 -1.1420 0.0048 28 1 -0.3634 0.0046 1.0276 29 1 -0.3633 0.8877 -0.5179 30 1 -0.3633 -0.8923 -0.5099 31 1 1.6783 2.1453 0.0004 32 1 1.9430 3.2735 1.0458 33 1 1.8928 3.4888 -0.7247 34 1 1.9528 5.8187 -0.5642 35 1 1.3464 5.5246 1.0989 36 1 5.4200 4.7734 0.8413 37 1 4.7486 5.2733 -0.7402 38 1 4.8037 7.5110 0.8092 39 1 3.5474 7.4180 -0.4514 40 1 4.1146 10.0519 -1.4833 41 1 3.7926 8.1392 3.3211 42 1 2.0344 8.4365 3.3252 43 1 2.6806 6.1371 4.1698 44 1 1.5841 6.1043 2.7670 45 1 5.2781 -0.2032 0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972358011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:08 Heat of formation + Delta-G solvation = 36.682369 kcal Electronic energy + Delta-G solvation = -29422.029430 eV Core-core repulsion = 25442.196503 eV Total energy + Delta-G solvation = -3979.832927 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.60070 -40.28022 -38.81528 -36.50087 -34.59108 -34.31924 -33.59734 -31.56125 -31.36135 -29.92482 -28.67918 -27.59291 -26.23731 -25.49241 -23.84272 -23.51580 -22.79826 -21.49862 -20.03107 -19.02516 -18.00147 -17.52353 -17.05694 -16.79532 -16.21365 -15.76034 -15.59975 -15.16921 -15.11364 -14.51558 -14.42241 -14.28656 -13.99088 -13.75040 -13.40144 -13.31167 -13.18140 -12.92076 -12.82138 -12.77909 -12.43556 -12.17130 -11.43316 -11.25287 -11.19757 -11.14191 -10.95852 -10.83439 -10.58108 -10.47087 -10.42435 -10.39726 -10.11742 -10.03240 -9.78779 -9.66232 -9.19187 -8.77305 -8.65728 -6.82831 -5.96507 -3.43603 0.07612 0.56601 2.55315 2.68353 3.25902 3.32484 3.33397 3.35511 3.69489 3.87924 4.03308 4.16620 4.24211 4.31678 4.43587 4.59687 4.84960 4.91758 4.94049 4.96506 5.14430 5.17019 5.25828 5.30237 5.34028 5.42796 5.56542 5.63885 5.66279 5.72352 5.79474 5.85476 5.87403 5.98685 6.03343 6.14202 6.24374 6.32748 6.48921 6.68286 6.90132 7.27158 7.30675 7.60808 7.76295 7.87386 8.22162 8.38072 8.98736 9.60631 10.19995 11.11966 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.003167 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.663768 B = 8839.487137 C = 9108.285684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.066 3.934 3 C -0.118 4.118 4 C -0.117 4.117 5 C 0.574 3.426 6 O -0.526 6.526 7 N -0.598 5.598 8 C 0.088 3.912 9 C -0.146 4.146 10 C 0.085 3.915 11 C 0.124 3.876 12 C 0.166 3.834 13 N -0.591 5.591 14 C -0.259 4.259 15 H 0.067 0.933 16 C 0.008 3.992 17 N -0.901 5.901 18 Si 0.904 3.096 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.283 1.283 22 C 0.109 3.891 23 C 0.046 3.954 24 O -0.374 6.374 25 C 0.086 3.914 26 N -0.241 5.241 27 N -0.235 5.235 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.183 0.817 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.033 0.967 39 H 0.093 0.907 40 H 0.257 0.743 41 H 0.027 0.973 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.047 0.953 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.500 -13.900 1.846 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.079 4.079 3 C -0.146 4.146 4 C -0.131 4.131 5 C 0.361 3.639 6 O -0.403 6.403 7 N -0.331 5.331 8 C -0.035 4.035 9 C -0.184 4.184 10 C 0.043 3.957 11 C 0.002 3.998 12 C 0.039 3.961 13 N -0.315 5.315 14 C -0.388 4.388 15 H 0.085 0.915 16 C -0.191 4.191 17 N -0.545 5.545 18 Si 0.734 3.266 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.209 1.209 22 C -0.018 4.018 23 C -0.032 4.032 24 O -0.293 6.293 25 C -0.079 4.079 26 N -0.081 5.081 27 N -0.078 5.078 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.200 0.800 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.051 0.949 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.653 -15.682 1.706 16.757 hybrid contribution -0.630 2.407 -0.585 2.556 sum -6.283 -13.275 1.121 14.730 Atomic orbital electron populations 1.20726 0.86907 1.04405 1.03980 1.22967 0.99379 0.89970 0.95585 1.23914 0.94194 1.02307 0.94224 1.21234 0.94537 0.95918 1.01436 1.17509 0.86842 0.81691 0.77823 1.90807 1.13601 1.86157 1.49783 1.48418 1.07961 1.06320 1.70352 1.22643 0.81184 0.99013 1.00614 1.23118 0.99836 0.91785 1.03629 1.22715 0.92992 0.98080 0.81911 1.22236 0.96245 0.80396 1.00896 1.21079 0.94034 0.83080 0.97893 1.44005 1.50533 1.37073 0.99871 1.19080 0.98860 1.12155 1.08697 0.91523 1.25140 0.95465 0.97879 1.00661 1.69978 1.13510 1.45728 1.25257 0.86351 0.80267 0.80300 0.79714 1.20761 1.21502 1.20889 1.21607 0.99489 0.93176 0.87506 1.23121 0.91641 0.93504 0.94920 1.87660 1.57918 1.66610 1.17120 1.24541 1.03129 0.87891 0.92360 1.73111 0.99110 1.26683 1.09163 1.72789 1.02107 1.25172 1.07761 0.89511 0.89901 0.89670 0.80049 0.90686 0.90645 0.88948 0.89086 0.89285 0.89033 0.94919 0.88846 0.93272 0.95480 0.91820 0.89876 0.93457 0.79902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 10.19 36.00 0.37 -0.27 16 2 C 0.07 0.66 6.86 -82.45 -0.57 0.09 16 3 C -0.12 -1.19 8.41 -38.78 -0.33 -1.51 16 4 C -0.12 -1.45 5.92 -104.57 -0.62 -2.07 16 5 C 0.57 8.44 7.83 -12.20 -0.10 8.34 16 6 O -0.53 -9.24 16.79 5.35 0.09 -9.15 16 7 N -0.60 -8.39 3.33 -171.78 -0.57 -8.96 16 8 C 0.09 0.99 4.90 -2.96 -0.01 0.98 16 9 C -0.15 -2.05 5.87 -25.24 -0.15 -2.20 16 10 C 0.09 1.44 0.84 -89.65 -0.08 1.37 16 11 C 0.12 1.97 6.07 -2.88 -0.02 1.95 16 12 C 0.17 3.52 4.03 -3.91 -0.02 3.51 16 13 N -0.59 -13.35 2.96 -172.25 -0.51 -13.86 16 14 C -0.26 -6.43 9.63 -15.06 -0.15 -6.57 16 15 H 0.07 1.62 7.87 -52.49 -0.41 1.21 16 16 C 0.01 0.21 4.99 -17.43 -0.09 0.12 16 17 N -0.90 -24.25 11.27 55.49 0.63 -23.62 16 18 Si 0.90 20.06 29.58 -169.99 -5.03 15.03 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 C 0.11 2.07 6.71 -3.54 -0.02 2.05 16 23 C 0.05 0.73 6.78 37.30 0.25 0.98 16 24 O -0.37 -6.55 10.29 -35.22 -0.36 -6.91 16 25 C 0.09 1.07 10.91 -16.96 -0.18 0.89 16 26 N -0.24 -3.24 11.49 30.78 0.35 -2.89 16 27 N -0.23 -2.99 11.40 33.58 0.38 -2.60 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.18 1.45 3.06 -52.50 -0.16 1.29 16 32 H 0.08 0.74 6.66 -51.93 -0.35 0.40 16 33 H 0.08 0.67 6.84 -51.93 -0.36 0.32 16 34 H 0.09 1.37 7.83 -51.93 -0.41 0.96 16 35 H 0.09 1.27 6.07 -51.93 -0.32 0.95 16 36 H 0.09 1.50 8.10 -51.93 -0.42 1.08 16 37 H 0.09 1.42 8.00 -51.93 -0.42 1.01 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 2.17 6.18 -51.93 -0.32 1.85 16 40 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.05 0.71 6.22 -51.93 -0.32 0.38 16 45 H 0.18 2.04 7.76 -52.49 -0.41 1.64 16 LS Contribution 358.00 15.07 5.39 5.39 Total: -1.00 -30.89 358.00 -7.29 -38.18 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.97 Total: 1.76 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -1.70 Total: 7.64 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.28 Total: -51.94 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.27 Total: -16.06 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.89 -7.29 -38.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972358011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.861 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds