Wall clock time and date at job start Tue Mar 31 2020 17:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38549 * 120.01556 * 2 1 4 4 C 1.40078 * 117.81692 * 180.23664 * 3 2 1 5 5 C 1.48138 * 121.14729 * 179.78925 * 4 3 2 6 6 O 1.21514 * 120.00085 * 187.04420 * 5 4 3 7 7 N 1.34775 * 119.99656 * 7.04144 * 5 4 3 8 8 C 1.47084 * 125.63217 * 355.09324 * 7 5 4 9 9 C 1.54463 * 107.29588 * 179.01885 * 8 7 5 10 10 C 1.54376 * 102.86977 * 338.49943 * 9 8 7 11 11 C 1.47583 * 125.62670 * 175.08711 * 7 5 4 12 12 C 1.52366 * 110.37155 * 152.42224 * 10 9 8 13 13 N 1.47332 * 108.40124 * 73.34321 * 12 10 9 14 14 C 1.36938 * 121.07722 * 229.21177 * 13 12 10 15 15 H 1.07999 * 119.99904 * 150.31753 * 14 13 12 16 16 C 1.38811 * 119.99929 * 330.30925 * 14 13 12 17 17 N 1.31619 * 120.00125 * 345.83334 * 16 14 13 18 18 Si 1.86805 * 119.99872 * 165.82952 * 16 14 13 19 19 H 1.48496 * 109.46800 * 60.00427 * 18 16 14 20 20 H 1.48503 * 109.46980 * 180.02562 * 18 16 14 21 21 H 1.48490 * 109.47082 * 300.00169 * 18 16 14 22 22 C 1.47167 * 117.84408 * 49.18825 * 13 12 10 23 23 C 1.53272 * 108.57558 * 308.79193 * 22 13 12 24 24 O 1.41888 * 110.71234 * 276.29065 * 10 9 8 25 25 C 1.39766 * 117.70646 * 359.51582 * 4 3 2 26 26 N 1.31892 * 119.65795 * 0.24643 * 25 4 3 27 27 N 1.28280 * 122.32959 * 0.02562 * 26 25 4 28 28 H 1.08997 * 109.47353 * 270.25485 * 1 2 3 29 29 H 1.09006 * 109.46754 * 30.25895 * 1 2 3 30 30 H 1.09005 * 109.46815 * 150.25735 * 1 2 3 31 31 H 1.07998 * 121.09345 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.88162 * 59.59792 * 8 7 5 33 33 H 1.09000 * 110.00814 * 298.51258 * 8 7 5 34 34 H 1.09005 * 110.73267 * 96.84617 * 9 8 7 35 35 H 1.09005 * 110.73186 * 220.15652 * 9 8 7 36 36 H 1.08997 * 110.37794 * 322.13317 * 11 7 5 37 37 H 1.09000 * 110.37313 * 84.36736 * 11 7 5 38 38 H 1.09002 * 109.67514 * 193.07399 * 12 10 9 39 39 H 1.09002 * 109.68059 * 313.57347 * 12 10 9 40 40 H 0.97007 * 119.99950 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.61693 * 68.51287 * 22 13 12 42 42 H 1.08992 * 109.62015 * 189.06031 * 22 13 12 43 43 H 1.09001 * 109.51125 * 172.89793 * 23 22 13 44 44 H 1.08999 * 109.51089 * 293.04343 * 23 22 13 45 45 H 1.08001 * 120.17216 * 180.22607 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5998 1.1459 -0.0051 5 6 4.4141 2.3834 -0.0101 6 8 5.6200 2.3167 -0.1436 7 7 3.8173 3.5833 0.1332 8 6 2.3666 3.8162 0.2007 9 6 2.1535 5.3341 0.3914 10 6 3.5072 5.8016 0.9677 11 6 4.5116 4.8805 0.2486 12 6 3.7629 7.2593 0.6052 13 7 2.8780 8.1047 1.4254 14 6 2.1158 9.0902 0.8571 15 1 1.1725 9.3684 1.3033 16 6 2.5558 9.7318 -0.2926 17 7 3.8071 9.6033 -0.6801 18 14 1.3719 10.7775 -1.2899 19 1 0.8497 11.8790 -0.4419 20 1 2.0828 11.3488 -2.4619 21 1 0.2423 9.9355 -1.7588 22 6 2.8392 7.8553 2.8753 23 6 2.5872 6.3614 3.1072 24 8 3.5511 5.6009 2.3717 25 6 4.2017 -0.1154 0.0006 26 7 3.4484 -1.1980 0.0055 27 7 2.1668 -1.1420 0.0048 28 1 -0.3634 0.0046 1.0276 29 1 -0.3633 0.8877 -0.5179 30 1 -0.3633 -0.8923 -0.5099 31 1 1.6783 2.1453 0.0004 32 1 1.9430 3.2735 1.0458 33 1 1.8928 3.4888 -0.7247 34 1 1.9528 5.8187 -0.5642 35 1 1.3464 5.5246 1.0989 36 1 5.4200 4.7734 0.8413 37 1 4.7486 5.2733 -0.7402 38 1 4.8037 7.5110 0.8092 39 1 3.5474 7.4180 -0.4514 40 1 4.1146 10.0519 -1.4833 41 1 3.7926 8.1392 3.3211 42 1 2.0344 8.4365 3.3252 43 1 2.6806 6.1371 4.1698 44 1 1.5841 6.1043 2.7670 45 1 5.2781 -0.2032 0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972358011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:08 Heat of formation + Delta-G solvation = 15.556076 kcal Electronic energy + Delta-G solvation = -29422.945535 eV Core-core repulsion = 25442.196503 eV Total energy + Delta-G solvation = -3980.749031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.54991 -41.46932 -40.08751 -37.76696 -36.25914 -35.15983 -34.54493 -33.23351 -32.75951 -31.09608 -29.51241 -28.98242 -27.62115 -26.61436 -25.20899 -24.65807 -23.92688 -22.96769 -21.11175 -20.43442 -18.97149 -18.91646 -18.43129 -17.81227 -17.44773 -16.93715 -16.74642 -16.61518 -16.16001 -16.09233 -15.77073 -15.27052 -15.20752 -15.01736 -14.69032 -14.51931 -14.45854 -14.07683 -13.80572 -13.71160 -13.49574 -13.20736 -13.01422 -12.72785 -12.63242 -12.45985 -12.28275 -12.18136 -12.10754 -11.86282 -11.83713 -11.66978 -11.40287 -11.15181 -10.83384 -10.74333 -10.70925 -10.47340 -9.89798 -8.66844 -7.88172 -5.38318 -0.83847 -0.26049 1.47297 1.51130 1.51588 1.58129 1.58669 2.44040 2.49809 2.69741 2.91845 2.97933 3.25342 3.29580 3.38952 3.40513 3.49682 3.65456 3.93531 3.95898 4.13464 4.17347 4.22922 4.26083 4.35096 4.40525 4.51309 4.56749 4.61662 4.65702 4.74009 4.80245 4.83428 4.89798 4.95451 5.01939 5.06094 5.11221 5.15014 5.26290 5.31024 5.52004 5.64849 6.19731 6.32939 6.40439 6.74429 7.09291 7.50778 7.76534 8.33243 9.17859 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.003167 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.663768 B = 8839.487137 C = 9108.285684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.071 3.929 3 C -0.099 4.099 4 C -0.128 4.128 5 C 0.575 3.425 6 O -0.566 6.566 7 N -0.597 5.597 8 C 0.088 3.912 9 C -0.138 4.138 10 C 0.092 3.908 11 C 0.127 3.873 12 C 0.177 3.823 13 N -0.607 5.607 14 C -0.260 4.260 15 H 0.074 0.926 16 C -0.044 4.044 17 N -0.936 5.936 18 Si 0.966 3.034 19 H -0.279 1.279 20 H -0.300 1.300 21 H -0.270 1.270 22 C 0.102 3.898 23 C 0.053 3.947 24 O -0.383 6.383 25 C 0.080 3.920 26 N -0.264 5.264 27 N -0.259 5.259 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.209 0.791 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.087 0.913 38 H -0.009 1.009 39 H 0.069 0.931 40 H 0.250 0.750 41 H 0.009 0.991 42 H 0.074 0.926 43 H 0.114 0.886 44 H 0.067 0.933 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.065 -14.982 2.375 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.074 4.074 3 C -0.127 4.127 4 C -0.142 4.142 5 C 0.364 3.636 6 O -0.445 6.445 7 N -0.328 5.328 8 C -0.033 4.033 9 C -0.176 4.176 10 C 0.050 3.950 11 C 0.004 3.996 12 C 0.050 3.950 13 N -0.331 5.331 14 C -0.390 4.390 15 H 0.092 0.908 16 C -0.240 4.240 17 N -0.582 5.582 18 Si 0.794 3.206 19 H -0.205 1.205 20 H -0.227 1.227 21 H -0.195 1.195 22 C -0.023 4.023 23 C -0.024 4.024 24 O -0.303 6.303 25 C -0.086 4.086 26 N -0.103 5.103 27 N -0.102 5.102 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.105 0.895 31 H 0.225 0.775 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.009 0.991 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.027 0.973 42 H 0.093 0.907 43 H 0.132 0.868 44 H 0.085 0.915 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -9.263 -16.797 2.266 19.315 hybrid contribution 0.468 2.811 -0.666 2.926 sum -8.795 -13.986 1.600 16.599 Atomic orbital electron populations 1.20936 0.83779 1.05912 1.05431 1.23590 1.01209 0.88982 0.93616 1.24183 0.92926 1.03420 0.92200 1.21022 0.95504 0.94452 1.03246 1.17812 0.86581 0.82268 0.76977 1.90785 1.15439 1.86708 1.51598 1.48398 1.09110 1.05332 1.69960 1.22902 0.79580 0.97196 1.03642 1.23015 0.97837 0.93627 1.03087 1.22384 0.95381 0.95069 0.82148 1.22010 0.95683 0.81571 1.00287 1.20799 0.91594 0.86087 0.96489 1.44265 1.50205 1.37086 1.01545 1.19433 0.99131 1.11965 1.08474 0.90833 1.25853 0.96663 0.99485 1.01961 1.70153 1.15309 1.47195 1.25511 0.85372 0.78521 0.78879 0.77831 1.20485 1.22674 1.19514 1.21799 0.98989 0.96159 0.85390 1.23179 0.92182 0.90468 0.96553 1.87665 1.58884 1.66520 1.17184 1.24593 1.03370 0.88036 0.92584 1.73081 0.99811 1.27161 1.10205 1.72730 1.01893 1.26862 1.08740 0.87867 0.87123 0.89501 0.77465 0.87930 0.87067 0.89826 0.88065 0.91043 0.89482 0.99080 0.91256 0.94063 0.97326 0.90743 0.86772 0.91462 0.79783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.19 71.24 0.73 -0.07 16 2 C 0.07 1.19 6.86 42.62 0.29 1.48 16 3 C -0.10 -1.61 8.41 22.79 0.19 -1.42 16 4 C -0.13 -2.95 5.92 -19.83 -0.12 -3.07 16 5 C 0.58 16.34 7.83 86.87 0.68 17.02 16 6 O -0.57 -20.21 16.79 -3.76 -0.06 -20.27 16 7 N -0.60 -15.72 3.33 -815.68 -2.72 -18.44 16 8 C 0.09 1.62 4.90 86.77 0.42 2.05 16 9 C -0.14 -3.50 5.87 31.56 0.19 -3.32 16 10 C 0.09 3.06 0.84 -10.17 -0.01 3.06 16 11 C 0.13 4.08 6.07 86.54 0.52 4.61 16 12 C 0.18 7.77 4.03 86.01 0.35 8.11 16 13 N -0.61 -27.49 2.96 -698.86 -2.07 -29.56 16 14 C -0.26 -12.87 9.63 84.03 0.81 -12.06 16 15 H 0.07 3.48 7.87 -2.91 -0.02 3.46 16 16 C -0.04 -2.24 4.99 84.86 0.42 -1.82 16 17 N -0.94 -52.09 11.27 21.65 0.24 -51.84 16 18 Si 0.97 41.22 29.58 68.60 2.03 43.25 16 19 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 22 C 0.10 3.80 6.71 86.34 0.58 4.38 16 23 C 0.05 1.54 6.78 72.07 0.49 2.03 16 24 O -0.38 -12.79 10.29 -148.95 -1.53 -14.32 16 25 C 0.08 1.96 10.91 85.05 0.93 2.89 16 26 N -0.26 -6.91 11.49 -56.53 -0.65 -7.56 16 27 N -0.26 -6.12 11.40 -47.68 -0.54 -6.67 16 28 H 0.10 0.54 8.14 -2.39 -0.02 0.53 16 29 H 0.11 0.29 8.09 -2.38 -0.02 0.27 16 30 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.21 2.13 3.06 -2.92 -0.01 2.12 16 32 H 0.10 1.43 6.66 -2.39 -0.02 1.42 16 33 H 0.11 1.36 6.84 -2.39 -0.02 1.35 16 34 H 0.08 2.31 7.83 -2.38 -0.02 2.29 16 35 H 0.10 2.39 6.07 -2.38 -0.01 2.38 16 36 H 0.07 2.52 8.10 -2.39 -0.02 2.50 16 37 H 0.09 2.83 8.00 -2.39 -0.02 2.81 16 38 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.07 3.36 6.18 -2.39 -0.01 3.34 16 40 H 0.25 13.68 8.31 -92.70 -0.77 12.91 16 41 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 42 H 0.07 2.57 7.96 -2.39 -0.02 2.55 16 43 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.07 1.72 6.22 -2.39 -0.01 1.70 16 45 H 0.19 4.24 7.76 -2.91 -0.02 4.22 16 Total: -1.00 -70.36 358.00 2.20 -68.16 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.03 Total: 13.37 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 6.47 Total: 23.88 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -5.74 Total: -114.07 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -1.60 Total: -34.59 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -70.36 2.20 -68.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972358011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.717 kcal (2) G-P(sol) polarization free energy of solvation -70.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds