Wall clock time and date at job start Tue Mar 31 2020 17:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38570 * 119.96437 * 2 1 4 4 C 1.38824 * 118.06811 * 180.02562 * 3 2 1 5 5 C 1.39721 * 117.89560 * 359.97438 * 4 3 2 6 6 C 1.48158 * 120.18219 * 180.02562 * 5 4 3 7 7 O 1.21518 * 119.99857 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99848 * 180.02562 * 6 5 4 9 9 C 1.47083 * 125.63610 * 359.69426 * 8 6 5 10 10 C 1.54465 * 107.29446 * 178.91351 * 9 8 6 11 11 C 1.54375 * 102.95080 * 338.83879 * 10 9 8 12 12 C 1.47580 * 125.62655 * 180.02562 * 8 6 5 13 13 C 1.52354 * 110.39561 * 152.20278 * 11 10 9 14 14 N 1.47325 * 108.43795 * 73.53043 * 13 11 10 15 15 C 1.36940 * 121.08271 * 229.16946 * 14 13 11 16 16 H 1.07997 * 119.99477 * 26.69152 * 15 14 13 17 17 C 1.38809 * 120.00343 * 206.69045 * 15 14 13 18 18 N 1.31614 * 120.00015 * 17.10240 * 17 15 14 19 19 Si 1.86799 * 120.00080 * 197.10717 * 17 15 14 20 20 H 1.48500 * 109.47116 * 94.15036 * 19 17 15 21 21 H 1.48494 * 109.47223 * 214.14859 * 19 17 15 22 22 H 1.48501 * 109.47180 * 334.15281 * 19 17 15 23 23 C 1.47170 * 117.84090 * 49.15496 * 14 13 11 24 24 C 1.53282 * 108.54794 * 308.73624 * 23 14 13 25 25 O 1.41885 * 110.72739 * 276.13640 * 11 10 9 26 26 N 1.32777 * 119.63586 * 0.27973 * 5 4 3 27 27 N 1.28355 * 122.03134 * 359.39141 * 26 5 4 28 28 H 1.08995 * 109.47218 * 89.99627 * 1 2 3 29 29 H 1.08994 * 109.47030 * 210.00077 * 1 2 3 30 30 H 1.09001 * 109.46766 * 329.99738 * 1 2 3 31 31 H 1.07998 * 120.97074 * 359.97438 * 3 2 1 32 32 H 1.07992 * 121.05539 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.87744 * 298.46873 * 9 8 6 34 34 H 1.09005 * 109.87577 * 59.61329 * 9 8 6 35 35 H 1.09000 * 110.86440 * 220.38927 * 10 9 8 36 36 H 1.09002 * 110.53115 * 97.13231 * 10 9 8 37 37 H 1.09001 * 110.37495 * 322.10846 * 12 8 6 38 38 H 1.08995 * 110.37746 * 84.46314 * 12 8 6 39 39 H 1.08999 * 109.64315 * 193.21835 * 13 11 10 40 40 H 1.09004 * 109.64651 * 313.63476 * 13 11 10 41 41 H 0.97007 * 120.00353 * 179.97438 * 18 17 15 42 42 H 1.09005 * 109.62576 * 68.45297 * 23 14 13 43 43 H 1.09005 * 109.62244 * 189.01731 * 23 14 13 44 44 H 1.09002 * 109.50881 * 172.96260 * 24 23 14 45 45 H 1.09000 * 109.51251 * 293.11537 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1992 1.2005 0.0000 4 6 3.5866 1.1545 -0.0005 5 6 4.1991 -0.1013 -0.0005 6 6 5.6768 -0.2093 -0.0005 7 8 6.3595 0.7959 -0.0001 8 7 6.2637 -1.4226 -0.0010 9 6 5.5608 -2.7145 0.0048 10 6 6.6364 -3.8227 -0.0262 11 6 7.8722 -3.0896 -0.5907 12 6 7.7179 -1.6740 -0.0005 13 6 9.1531 -3.7422 -0.0862 14 7 9.3312 -5.0243 -0.7898 15 6 9.6044 -6.1763 -0.1018 16 1 9.2831 -6.2818 0.9239 17 6 10.2942 -7.2086 -0.7226 18 7 10.9732 -6.9762 -1.8259 19 14 10.2589 -8.9275 0.0078 20 1 9.1763 -9.7158 -0.6340 21 1 11.5644 -9.5937 -0.2308 22 1 10.0076 -8.8395 1.4687 23 6 9.2056 -5.0268 -2.2561 24 6 7.8882 -4.3402 -2.6338 25 8 7.8309 -3.0542 -2.0085 26 7 3.4497 -1.1973 -0.0056 27 7 2.1672 -1.1451 0.0009 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6745 2.1445 -0.0004 32 1 4.1740 2.0607 -0.0002 33 1 4.9587 -2.8049 0.9090 34 1 4.9240 -2.7940 -0.8763 35 1 6.3362 -4.6369 -0.6857 36 1 6.8335 -4.1924 0.9801 37 1 8.2295 -0.9437 -0.6274 38 1 8.1082 -1.6422 1.0166 39 1 10.0021 -3.0903 -0.2919 40 1 9.0772 -3.9172 0.9870 41 1 11.4556 -7.6975 -2.2596 42 1 10.0413 -4.4826 -2.6961 43 1 9.2010 -6.0538 -2.6214 44 1 7.8370 -4.2213 -3.7161 45 1 7.0501 -4.9482 -2.2935 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972382831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:16 Heat of formation + Delta-G solvation = 24.173856 kcal Electronic energy + Delta-G solvation = -29018.924669 eV Core-core repulsion = 25038.549332 eV Total energy + Delta-G solvation = -3980.375336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.52485 -40.13242 -38.69392 -36.23479 -34.49109 -34.35124 -33.38270 -31.87534 -30.89086 -29.63378 -28.99585 -27.49958 -25.92086 -25.20104 -23.76767 -23.28322 -22.62313 -21.47636 -20.23004 -18.91921 -18.11560 -17.33606 -16.91169 -16.27001 -16.07610 -15.84210 -15.64509 -15.16814 -14.88475 -14.56084 -14.33284 -14.06184 -13.79152 -13.61585 -13.34794 -13.25024 -13.03391 -12.89540 -12.82324 -12.69358 -12.34355 -12.23296 -11.66227 -11.20822 -11.16220 -10.96770 -10.83613 -10.68015 -10.62247 -10.34294 -10.23908 -10.13622 -10.07078 -10.00055 -9.96661 -9.52605 -9.02815 -8.57590 -8.53382 -6.74760 -5.84895 -3.28686 0.15078 0.41633 2.47768 2.76526 3.34197 3.38092 3.41574 3.42776 3.52947 3.97980 4.11293 4.18105 4.28335 4.41046 4.56071 4.57997 4.87905 4.97042 5.00179 5.06317 5.28768 5.29289 5.33525 5.41791 5.46546 5.52299 5.59419 5.75011 5.80699 5.82794 5.93713 6.00554 6.04845 6.21739 6.27713 6.37195 6.43679 6.45697 6.54118 6.71485 7.11016 7.44276 7.50875 7.70998 7.92636 7.93669 8.28136 8.32215 9.10189 9.72837 10.30635 11.23134 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022506 B = 0.002761 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.789157 B =10137.820824 C =10696.036039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.081 3.919 3 C -0.125 4.125 4 C -0.062 4.062 5 C 0.025 3.975 6 C 0.586 3.414 7 O -0.537 6.537 8 N -0.587 5.587 9 C 0.116 3.884 10 C -0.149 4.149 11 C 0.095 3.905 12 C 0.121 3.879 13 C 0.131 3.869 14 N -0.590 5.590 15 C -0.252 4.252 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.278 1.278 23 C 0.140 3.860 24 C 0.036 3.964 25 O -0.374 6.374 26 N -0.198 5.198 27 N -0.244 5.244 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.028 0.972 40 H 0.066 0.934 41 H 0.255 0.745 42 H 0.028 0.972 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.164 14.718 3.143 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.062 4.062 3 C -0.154 4.154 4 C -0.091 4.091 5 C -0.122 4.122 6 C 0.371 3.629 7 O -0.414 6.414 8 N -0.318 5.318 9 C -0.007 4.007 10 C -0.187 4.187 11 C 0.053 3.947 12 C -0.001 4.001 13 C 0.004 3.996 14 N -0.314 5.314 15 C -0.382 4.382 16 H 0.087 0.913 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.203 1.203 23 C 0.014 3.986 24 C -0.041 4.041 25 O -0.293 6.293 26 N -0.044 5.044 27 N -0.088 5.088 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.174 0.826 32 H 0.180 0.820 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.113 0.887 44 H 0.100 0.900 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.754 13.693 2.958 23.408 hybrid contribution 0.127 0.346 0.319 0.487 sum -18.626 14.039 3.276 23.554 Atomic orbital electron populations 1.20741 0.87089 1.04353 1.03936 1.23120 0.99384 0.90573 0.93171 1.22305 0.94191 1.00149 0.98737 1.22441 0.95049 0.99154 0.92447 1.22800 0.96412 0.92010 1.00937 1.17112 0.85059 0.82720 0.78013 1.90796 1.63551 1.35305 1.51730 1.48359 1.08369 1.05654 1.69413 1.22239 0.94711 0.81089 1.02621 1.23129 0.94916 0.97621 1.03029 1.22318 0.96345 0.93122 0.82921 1.22230 0.79963 0.96677 1.01233 1.21260 0.92770 0.89000 0.96546 1.44061 1.82719 1.02759 1.01872 1.19176 1.29846 0.91666 0.97463 0.91327 1.25046 0.96743 0.99471 0.98344 1.70035 1.32461 1.31301 1.20823 0.86242 0.77035 0.84544 0.78756 1.21411 1.21758 1.20337 1.21436 0.91748 1.01086 0.84341 1.23412 1.00197 0.84319 0.96191 1.87644 1.94642 1.29792 1.17221 1.73512 0.99416 1.25732 1.05717 1.73160 1.01178 1.24546 1.09929 0.89459 0.89600 0.90028 0.82564 0.81960 0.90799 0.90544 0.89013 0.89808 0.89269 0.89462 0.95372 0.91591 0.93518 0.95412 0.88725 0.90035 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.49 10.19 36.01 0.37 -0.12 16 2 C 0.08 0.69 6.87 -82.32 -0.57 0.13 16 3 C -0.12 -0.91 9.86 -39.24 -0.39 -1.29 16 4 C -0.06 -0.61 9.73 -38.81 -0.38 -0.99 16 5 C 0.02 0.33 6.80 -82.83 -0.56 -0.24 16 6 C 0.59 9.13 7.85 -12.19 -0.10 9.03 16 7 O -0.54 -9.37 16.66 5.35 0.09 -9.29 16 8 N -0.59 -9.17 3.33 -171.73 -0.57 -9.74 16 9 C 0.12 1.70 5.42 -2.96 -0.02 1.69 16 10 C -0.15 -2.39 5.87 -25.24 -0.15 -2.54 16 11 C 0.10 1.70 0.84 -89.64 -0.08 1.62 16 12 C 0.12 1.94 6.08 -2.86 -0.02 1.92 16 13 C 0.13 2.67 5.39 -3.92 -0.02 2.65 16 14 N -0.59 -14.29 2.98 -172.25 -0.51 -14.80 16 15 C -0.25 -6.65 9.66 -15.06 -0.15 -6.79 16 16 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 17 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 18 N -0.90 -25.61 11.18 55.49 0.62 -24.99 16 19 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.14 3.27 5.45 -3.53 -0.02 3.26 16 24 C 0.04 0.70 6.78 37.30 0.25 0.96 16 25 O -0.37 -7.34 10.28 -35.22 -0.36 -7.70 16 26 N -0.20 -2.69 8.09 33.32 0.27 -2.43 16 27 N -0.24 -2.96 11.43 33.63 0.38 -2.58 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.20 8.09 -51.93 -0.42 -0.22 16 31 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 32 H 0.16 1.38 7.72 -52.49 -0.41 0.97 16 33 H 0.07 1.02 7.57 -51.93 -0.39 0.63 16 34 H 0.08 1.17 7.41 -51.93 -0.38 0.79 16 35 H 0.09 1.56 6.08 -51.93 -0.32 1.25 16 36 H 0.08 1.30 7.83 -51.93 -0.41 0.89 16 37 H 0.09 1.50 8.06 -51.93 -0.42 1.09 16 38 H 0.09 1.25 7.99 -51.93 -0.42 0.83 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 1.26 7.73 -51.93 -0.40 0.86 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 44 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.05 0.87 6.23 -51.93 -0.32 0.54 16 LS Contribution 362.40 15.07 5.46 5.46 Total: -1.00 -32.39 362.40 -7.84 -40.23 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.29 Total: 0.43 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -1.90 Total: 9.27 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.19 Total: -54.54 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.27 Total: -16.99 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.39 -7.84 -40.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972382831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.402 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds