Wall clock time and date at job start Tue Mar 31 2020 17:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38570 * 119.96437 * 2 1 4 4 C 1.38824 * 118.06811 * 180.02562 * 3 2 1 5 5 C 1.39721 * 117.89560 * 359.97438 * 4 3 2 6 6 C 1.48158 * 120.18219 * 180.02562 * 5 4 3 7 7 O 1.21518 * 119.99857 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99848 * 180.02562 * 6 5 4 9 9 C 1.47083 * 125.63610 * 359.69426 * 8 6 5 10 10 C 1.54465 * 107.29446 * 178.91351 * 9 8 6 11 11 C 1.54375 * 102.95080 * 338.83879 * 10 9 8 12 12 C 1.47580 * 125.62655 * 180.02562 * 8 6 5 13 13 C 1.52354 * 110.39561 * 152.20278 * 11 10 9 14 14 N 1.47325 * 108.43795 * 73.53043 * 13 11 10 15 15 C 1.36940 * 121.08271 * 229.16946 * 14 13 11 16 16 H 1.07997 * 119.99477 * 26.69152 * 15 14 13 17 17 C 1.38809 * 120.00343 * 206.69045 * 15 14 13 18 18 N 1.31614 * 120.00015 * 17.10240 * 17 15 14 19 19 Si 1.86799 * 120.00080 * 197.10717 * 17 15 14 20 20 H 1.48500 * 109.47116 * 94.15036 * 19 17 15 21 21 H 1.48494 * 109.47223 * 214.14859 * 19 17 15 22 22 H 1.48501 * 109.47180 * 334.15281 * 19 17 15 23 23 C 1.47170 * 117.84090 * 49.15496 * 14 13 11 24 24 C 1.53282 * 108.54794 * 308.73624 * 23 14 13 25 25 O 1.41885 * 110.72739 * 276.13640 * 11 10 9 26 26 N 1.32777 * 119.63586 * 0.27973 * 5 4 3 27 27 N 1.28355 * 122.03134 * 359.39141 * 26 5 4 28 28 H 1.08995 * 109.47218 * 89.99627 * 1 2 3 29 29 H 1.08994 * 109.47030 * 210.00077 * 1 2 3 30 30 H 1.09001 * 109.46766 * 329.99738 * 1 2 3 31 31 H 1.07998 * 120.97074 * 359.97438 * 3 2 1 32 32 H 1.07992 * 121.05539 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.87744 * 298.46873 * 9 8 6 34 34 H 1.09005 * 109.87577 * 59.61329 * 9 8 6 35 35 H 1.09000 * 110.86440 * 220.38927 * 10 9 8 36 36 H 1.09002 * 110.53115 * 97.13231 * 10 9 8 37 37 H 1.09001 * 110.37495 * 322.10846 * 12 8 6 38 38 H 1.08995 * 110.37746 * 84.46314 * 12 8 6 39 39 H 1.08999 * 109.64315 * 193.21835 * 13 11 10 40 40 H 1.09004 * 109.64651 * 313.63476 * 13 11 10 41 41 H 0.97007 * 120.00353 * 179.97438 * 18 17 15 42 42 H 1.09005 * 109.62576 * 68.45297 * 23 14 13 43 43 H 1.09005 * 109.62244 * 189.01731 * 23 14 13 44 44 H 1.09002 * 109.50881 * 172.96260 * 24 23 14 45 45 H 1.09000 * 109.51251 * 293.11537 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1992 1.2005 0.0000 4 6 3.5866 1.1545 -0.0005 5 6 4.1991 -0.1013 -0.0005 6 6 5.6768 -0.2093 -0.0005 7 8 6.3595 0.7959 -0.0001 8 7 6.2637 -1.4226 -0.0010 9 6 5.5608 -2.7145 0.0048 10 6 6.6364 -3.8227 -0.0262 11 6 7.8722 -3.0896 -0.5907 12 6 7.7179 -1.6740 -0.0005 13 6 9.1531 -3.7422 -0.0862 14 7 9.3312 -5.0243 -0.7898 15 6 9.6044 -6.1763 -0.1018 16 1 9.2831 -6.2818 0.9239 17 6 10.2942 -7.2086 -0.7226 18 7 10.9732 -6.9762 -1.8259 19 14 10.2589 -8.9275 0.0078 20 1 9.1763 -9.7158 -0.6340 21 1 11.5644 -9.5937 -0.2308 22 1 10.0076 -8.8395 1.4687 23 6 9.2056 -5.0268 -2.2561 24 6 7.8882 -4.3402 -2.6338 25 8 7.8309 -3.0542 -2.0085 26 7 3.4497 -1.1973 -0.0056 27 7 2.1672 -1.1451 0.0009 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6745 2.1445 -0.0004 32 1 4.1740 2.0607 -0.0002 33 1 4.9587 -2.8049 0.9090 34 1 4.9240 -2.7940 -0.8763 35 1 6.3362 -4.6369 -0.6857 36 1 6.8335 -4.1924 0.9801 37 1 8.2295 -0.9437 -0.6274 38 1 8.1082 -1.6422 1.0166 39 1 10.0021 -3.0903 -0.2919 40 1 9.0772 -3.9172 0.9870 41 1 11.4556 -7.6975 -2.2596 42 1 10.0413 -4.4826 -2.6961 43 1 9.2010 -6.0538 -2.6214 44 1 7.8370 -4.2213 -3.7161 45 1 7.0501 -4.9482 -2.2935 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972382831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:15 Heat of formation + Delta-G solvation = 2.266422 kcal Electronic energy + Delta-G solvation = -29019.874647 eV Core-core repulsion = 25038.549332 eV Total energy + Delta-G solvation = -3981.325314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.38723 -41.43541 -40.03142 -37.66555 -36.23682 -35.13224 -34.16785 -33.49540 -32.61368 -30.99399 -29.84307 -29.02969 -27.36044 -26.21099 -25.18442 -24.45814 -23.78819 -23.11233 -21.35002 -20.45506 -19.15042 -18.83959 -18.33046 -17.51604 -17.08822 -17.03460 -16.80007 -16.59424 -16.18349 -15.98374 -15.71842 -15.27469 -15.10621 -15.03468 -14.66158 -14.41005 -14.21826 -14.06795 -13.84579 -13.68105 -13.57343 -13.19625 -13.06377 -12.91426 -12.62200 -12.60425 -12.41884 -12.22020 -12.07982 -11.89888 -11.87457 -11.35659 -11.27617 -11.17387 -10.81803 -10.81630 -10.75167 -10.47989 -9.81381 -8.71883 -7.88622 -5.35509 -0.65208 -0.28683 1.46379 1.48571 1.50065 1.58817 1.64644 2.48813 2.50528 2.62970 2.72739 3.23967 3.26793 3.37191 3.44810 3.56436 3.64973 3.82390 3.85471 3.90426 4.00002 4.22859 4.31974 4.39273 4.46140 4.55632 4.57148 4.64693 4.66741 4.72794 4.78124 4.82444 4.85558 4.93998 4.97235 4.97649 5.03832 5.14085 5.17267 5.28447 5.32094 5.55785 5.63918 6.24140 6.30494 6.37732 6.75524 7.07787 7.47658 7.75632 8.31046 9.17749 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022506 B = 0.002761 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.789157 B =10137.820824 C =10696.036039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.082 3.918 3 C -0.103 4.103 4 C -0.068 4.068 5 C 0.000 4.000 6 C 0.584 3.416 7 O -0.563 6.563 8 N -0.592 5.592 9 C 0.132 3.868 10 C -0.141 4.141 11 C 0.096 3.904 12 C 0.126 3.874 13 C 0.130 3.870 14 N -0.606 5.606 15 C -0.257 4.257 16 H 0.075 0.925 17 C -0.050 4.050 18 N -0.937 5.937 19 Si 0.969 3.031 20 H -0.285 1.285 21 H -0.299 1.299 22 H -0.266 1.266 23 C 0.147 3.853 24 C 0.050 3.950 25 O -0.383 6.383 26 N -0.222 5.222 27 N -0.276 5.276 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.205 0.795 32 H 0.174 0.826 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.017 0.983 40 H 0.079 0.921 41 H 0.250 0.750 42 H -0.002 1.002 43 H 0.069 0.931 44 H 0.103 0.897 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.295 16.107 4.261 27.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.061 4.061 3 C -0.131 4.131 4 C -0.097 4.097 5 C -0.146 4.146 6 C 0.371 3.629 7 O -0.442 6.442 8 N -0.323 5.323 9 C 0.009 3.991 10 C -0.180 4.180 11 C 0.054 3.946 12 C 0.004 3.996 13 C 0.004 3.996 14 N -0.330 5.330 15 C -0.386 4.386 16 H 0.093 0.907 17 C -0.246 4.246 18 N -0.583 5.583 19 Si 0.797 3.203 20 H -0.212 1.212 21 H -0.226 1.226 22 H -0.190 1.190 23 C 0.021 3.979 24 C -0.027 4.027 25 O -0.302 6.302 26 N -0.067 5.067 27 N -0.120 5.120 28 H 0.119 0.881 29 H 0.099 0.901 30 H 0.132 0.868 31 H 0.222 0.778 32 H 0.191 0.809 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.035 0.965 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.016 0.984 43 H 0.087 0.913 44 H 0.121 0.879 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.917 15.093 4.095 26.925 hybrid contribution 1.014 0.026 -0.014 1.015 sum -20.903 15.119 4.081 26.118 Atomic orbital electron populations 1.20917 0.84140 1.05751 1.05128 1.23812 1.01224 0.90099 0.91010 1.22818 0.92942 1.01620 0.95741 1.22670 0.96490 0.98195 0.92341 1.22584 0.94915 0.93603 1.03505 1.17518 0.86259 0.82099 0.77028 1.90765 1.64541 1.35942 1.52934 1.48403 1.08032 1.06155 1.69691 1.22093 0.93917 0.80135 1.02920 1.23060 0.94264 0.97598 1.03035 1.22276 0.95752 0.94438 0.82085 1.22144 0.80689 0.94994 1.01812 1.21380 0.93716 0.87373 0.97107 1.44285 1.82757 1.03712 1.02215 1.19524 1.28876 0.92446 0.97787 0.90691 1.25800 0.96886 1.02906 0.98986 1.70191 1.33767 1.31975 1.22374 0.85226 0.76374 0.80107 0.78579 1.21201 1.22558 1.19041 1.21250 0.92939 0.99572 0.84170 1.23245 0.97867 0.84112 0.97502 1.87646 1.94505 1.29685 1.18353 1.73399 1.00326 1.26321 1.06686 1.73087 1.00623 1.26720 1.11573 0.88110 0.90052 0.86824 0.77759 0.80902 0.89686 0.91138 0.89900 0.88966 0.90423 0.87642 0.96535 0.90275 0.94061 0.98354 0.91265 0.87881 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.57 10.19 71.24 0.73 0.16 16 2 C 0.08 1.16 6.87 42.59 0.29 1.45 16 3 C -0.10 -1.10 9.86 22.49 0.22 -0.88 16 4 C -0.07 -1.21 9.73 22.77 0.22 -0.99 16 5 C 0.00 0.01 6.80 42.00 0.29 0.30 16 6 C 0.58 18.05 7.85 86.88 0.68 18.73 16 7 O -0.56 -19.63 16.66 -3.77 -0.06 -19.69 16 8 N -0.59 -18.23 3.33 -815.54 -2.72 -20.95 16 9 C 0.13 3.77 5.42 86.77 0.47 4.24 16 10 C -0.14 -4.42 5.87 31.56 0.19 -4.24 16 11 C 0.10 3.41 0.84 -10.16 -0.01 3.40 16 12 C 0.13 3.99 6.08 86.56 0.53 4.52 16 13 C 0.13 5.33 5.39 86.01 0.46 5.79 16 14 N -0.61 -29.76 2.98 -698.86 -2.08 -31.84 16 15 C -0.26 -13.59 9.66 84.03 0.81 -12.78 16 16 H 0.08 3.81 7.89 -2.91 -0.02 3.78 16 17 C -0.05 -2.75 4.94 84.86 0.42 -2.33 16 18 N -0.94 -54.76 11.18 21.65 0.24 -54.52 16 19 Si 0.97 43.90 29.59 68.60 2.03 45.93 16 20 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 21 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 C 0.15 7.09 5.45 86.35 0.47 7.56 16 24 C 0.05 1.95 6.78 72.08 0.49 2.44 16 25 O -0.38 -15.01 10.28 -148.95 -1.53 -16.54 16 26 N -0.22 -5.87 8.09 -48.48 -0.39 -6.26 16 27 N -0.28 -6.31 11.43 -47.53 -0.54 -6.86 16 28 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.11 -0.05 8.09 -2.39 -0.02 -0.07 16 31 H 0.21 0.14 8.06 -2.91 -0.02 0.12 16 32 H 0.17 2.59 7.72 -2.91 -0.02 2.57 16 33 H 0.08 2.27 7.57 -2.39 -0.02 2.25 16 34 H 0.07 2.13 7.41 -2.38 -0.02 2.11 16 35 H 0.08 2.76 6.08 -2.39 -0.01 2.75 16 36 H 0.09 2.73 7.83 -2.39 -0.02 2.71 16 37 H 0.08 2.64 8.06 -2.39 -0.02 2.63 16 38 H 0.11 2.93 7.99 -2.39 -0.02 2.91 16 39 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.08 2.98 7.73 -2.38 -0.02 2.96 16 41 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 42 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 43 H 0.07 3.70 6.15 -2.38 -0.01 3.68 16 44 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 45 H 0.05 2.05 6.23 -2.39 -0.01 2.03 16 Total: -1.00 -72.49 362.40 2.21 -70.28 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 1.01 Total: 13.08 kcal Atomic # 6 Polarization: 21.12 SS G_CDS: 6.26 Total: 27.37 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -5.49 Total: -120.43 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.59 Total: -36.23 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -72.49 2.21 -70.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972382831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.542 kcal (2) G-P(sol) polarization free energy of solvation -72.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds