Wall clock time and date at job start Tue Mar 31 2020 17:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31924 * 120.16994 * 2 1 4 4 N 1.28283 * 122.32503 * 180.27292 * 3 2 1 5 5 C 1.31924 * 122.51014 * 359.72443 * 4 3 2 6 6 C 1.38499 * 119.97428 * 359.97438 * 5 4 3 7 7 C 1.39721 * 120.17356 * 179.73282 * 2 1 3 8 8 C 1.48139 * 121.14544 * 0.02800 * 7 2 1 9 9 O 1.21518 * 120.00124 * 44.25494 * 8 7 2 10 10 N 1.34783 * 119.99909 * 224.26266 * 8 7 2 11 11 C 1.47484 * 125.66348 * 354.57031 * 10 8 7 12 12 C 1.55017 * 104.89804 * 156.00764 * 11 10 8 13 13 C 1.54519 * 101.53414 * 36.37306 * 12 11 10 14 14 C 1.47184 * 125.66471 * 174.59859 * 10 8 7 15 15 C 1.52108 * 110.11312 * 207.08010 * 13 12 11 16 16 N 1.47299 * 108.67816 * 187.40909 * 15 13 12 17 17 C 1.36935 * 121.05136 * 229.29060 * 16 15 13 18 18 H 1.08002 * 120.00166 * 23.34974 * 17 16 15 19 19 C 1.38812 * 119.99617 * 203.34326 * 17 16 15 20 20 N 1.31619 * 119.99893 * 18.29284 * 19 17 16 21 21 Si 1.86800 * 120.00158 * 198.29067 * 19 17 16 22 22 H 1.48501 * 109.47441 * 84.98818 * 21 19 17 23 23 H 1.48503 * 109.46802 * 324.99197 * 21 19 17 24 24 H 1.48501 * 109.47334 * 204.99252 * 21 19 17 25 25 C 1.47160 * 117.88755 * 49.01457 * 16 15 13 26 26 C 1.53292 * 108.49727 * 309.05936 * 25 16 15 27 27 O 1.42057 * 110.33637 * 83.93676 * 13 12 11 28 28 H 1.09000 * 109.47065 * 263.34593 * 1 2 3 29 29 H 1.08998 * 109.47138 * 23.34076 * 1 2 3 30 30 H 1.09002 * 109.47189 * 143.34581 * 1 2 3 31 31 H 1.08002 * 120.00850 * 179.97438 * 5 4 3 32 32 H 1.07999 * 121.08971 * 179.97438 * 6 5 4 33 33 H 1.08996 * 110.35604 * 37.14712 * 11 10 8 34 34 H 1.09003 * 110.34931 * 274.86075 * 11 10 8 35 35 H 1.09005 * 111.01258 * 278.31158 * 12 11 10 36 36 H 1.09000 * 111.01411 * 154.43375 * 12 11 10 37 37 H 1.09002 * 109.90844 * 62.11082 * 14 10 8 38 38 H 1.09008 * 109.90417 * 300.85711 * 14 10 8 39 39 H 1.08995 * 109.58547 * 67.61734 * 15 13 12 40 40 H 1.09003 * 109.47439 * 307.12838 * 15 13 12 41 41 H 0.97008 * 119.99818 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.62939 * 68.75721 * 25 16 15 43 43 H 1.08995 * 109.63326 * 189.15309 * 25 16 15 44 44 H 1.09001 * 109.50963 * 172.90226 * 26 25 16 45 45 H 1.08995 * 109.51292 * 293.05658 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1405 0.0000 4 7 3.4519 1.1888 -0.0052 5 6 4.2023 0.1037 -0.0055 6 6 3.6091 -1.1478 0.0004 7 6 2.2093 -1.2079 0.0056 8 6 1.4983 -2.5075 0.0111 9 8 0.5457 -2.6821 -0.7230 10 7 1.9079 -3.4963 0.8303 11 6 3.1090 -3.4623 1.6855 12 6 2.8162 -4.4726 2.8242 13 6 2.0362 -5.5719 2.0689 14 6 1.2311 -4.7895 1.0196 15 6 1.0997 -6.2979 3.0227 16 7 0.5075 -7.4480 2.3181 17 6 -0.8435 -7.6700 2.3394 18 1 -1.5223 -6.8518 2.5301 19 6 -1.3407 -8.9465 2.1157 20 7 -0.5505 -9.9917 2.2405 21 14 -3.1312 -9.1811 1.6377 22 1 -3.2765 -9.0211 0.1685 23 1 -3.9655 -8.1669 2.3310 24 1 -3.5751 -10.5418 2.0338 25 6 1.4133 -8.3472 1.5856 26 6 2.3046 -7.4999 0.6705 27 8 2.9367 -6.4762 1.4449 28 1 -0.3633 -0.1191 1.0207 29 1 -0.3633 0.9435 -0.4072 30 1 -0.3634 -0.8245 -0.6135 31 1 5.2787 0.1914 -0.0104 32 1 4.2060 -2.0479 -0.0002 33 1 3.2554 -2.4625 2.0940 34 1 3.9867 -3.7735 1.1189 35 1 2.1997 -4.0189 3.6003 36 1 3.7415 -4.8678 3.2435 37 1 1.2132 -5.3403 0.0791 38 1 0.2142 -4.6274 1.3771 39 1 0.3099 -5.6200 3.3459 40 1 1.6625 -6.6486 3.8878 41 1 -0.8980 -10.8839 2.0845 42 1 2.0334 -8.8981 2.2929 43 1 0.8298 -9.0472 0.9877 44 1 3.0653 -8.1337 0.2147 45 1 1.6955 -7.0428 -0.1093 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972450447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:27 Heat of formation + Delta-G solvation = 23.625803 kcal Electronic energy + Delta-G solvation = -29471.657743 eV Core-core repulsion = 25491.258641 eV Total energy + Delta-G solvation = -3980.399102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62883 -40.32992 -38.83418 -36.46287 -34.57039 -34.07871 -33.70009 -32.01692 -31.12121 -29.33784 -28.76013 -27.84867 -26.46397 -25.21602 -23.46124 -23.34988 -23.20809 -21.30834 -20.38903 -18.86151 -18.19597 -17.60442 -16.94848 -16.74889 -16.32730 -15.86440 -15.47379 -15.20630 -14.99045 -14.68176 -14.55005 -14.29306 -13.85668 -13.83033 -13.51920 -13.20122 -13.15581 -12.92965 -12.85071 -12.56624 -12.19882 -12.11922 -11.59950 -11.43429 -11.30388 -11.17195 -10.93341 -10.84620 -10.64584 -10.57766 -10.50394 -10.29047 -10.01897 -10.00413 -9.77467 -9.66418 -9.20909 -8.78262 -8.58941 -6.87411 -5.91031 -3.32855 0.09686 0.51248 2.37645 2.65944 3.20062 3.32245 3.39628 3.39960 3.66934 3.90087 4.02259 4.06058 4.18705 4.35438 4.39988 4.53733 4.72376 4.87572 4.93958 5.12775 5.16474 5.21568 5.23975 5.28613 5.38812 5.39842 5.59062 5.64448 5.74926 5.75735 5.82759 5.84019 5.94506 6.02012 6.07379 6.20623 6.24436 6.26145 6.39664 6.56283 7.01692 7.26675 7.43957 7.63455 7.76508 7.84243 8.23825 8.33142 9.03224 9.66186 10.20743 11.16725 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.003253 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.366926 B = 8606.526251 C = 9566.983666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.120 3.880 3 N -0.244 5.244 4 N -0.229 5.229 5 C 0.030 3.970 6 C -0.085 4.085 7 C -0.120 4.120 8 C 0.574 3.426 9 O -0.518 6.518 10 N -0.603 5.603 11 C 0.096 3.904 12 C -0.119 4.119 13 C 0.097 3.903 14 C 0.095 3.905 15 C 0.131 3.869 16 N -0.594 5.594 17 C -0.254 4.254 18 H 0.070 0.930 19 C 0.003 3.997 20 N -0.903 5.903 21 Si 0.904 3.096 22 H -0.286 1.286 23 H -0.279 1.279 24 H -0.291 1.291 25 C 0.137 3.863 26 C 0.033 3.967 27 O -0.375 6.375 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.179 0.821 32 H 0.157 0.843 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.033 0.967 41 H 0.256 0.744 42 H 0.028 0.972 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.623 14.950 -1.717 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.024 4.024 3 N -0.087 5.087 4 N -0.070 5.070 5 C -0.134 4.134 6 C -0.115 4.115 7 C -0.134 4.134 8 C 0.361 3.639 9 O -0.395 6.395 10 N -0.336 5.336 11 C -0.026 4.026 12 C -0.157 4.157 13 C 0.055 3.945 14 C -0.026 4.026 15 C 0.003 3.997 16 N -0.318 5.318 17 C -0.383 4.383 18 H 0.088 0.912 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.734 3.266 22 H -0.212 1.212 23 H -0.204 1.204 24 H -0.217 1.217 25 C 0.011 3.989 26 C -0.044 4.044 27 O -0.294 6.294 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.196 0.804 32 H 0.175 0.825 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.066 0.934 42 H 0.046 0.954 43 H 0.120 0.880 44 H 0.103 0.897 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.135 16.386 -2.149 19.386 hybrid contribution -0.832 -1.974 -0.288 2.161 sum 9.303 14.412 -2.437 17.326 Atomic orbital electron populations 1.21024 0.86611 1.05720 1.04473 1.23053 0.99524 0.88490 0.91374 1.73083 1.01534 1.23875 1.10227 1.72869 0.99631 1.27814 1.06659 1.24292 1.02754 0.89154 0.97185 1.22773 0.93936 1.00657 0.94122 1.21057 0.94802 0.95532 1.02035 1.17520 0.83750 0.82239 0.80415 1.90795 1.27954 1.81026 1.39703 1.48526 1.26891 1.16321 1.41853 1.22572 0.88048 1.00016 0.91999 1.22749 1.02094 0.94278 0.96574 1.22221 0.90620 0.89246 0.92442 1.22633 0.97085 0.81898 1.01016 1.21281 0.94682 0.90999 0.92688 1.44139 1.03648 1.27454 1.56520 1.19189 0.81358 0.92915 1.44857 0.91193 1.24964 0.97941 0.95324 1.01369 1.70024 1.35288 0.97660 1.51727 0.86274 0.84508 0.77109 0.78712 1.21249 1.20409 1.21672 1.21515 0.91444 0.91938 0.94004 1.23445 0.97088 0.89637 0.94243 1.87664 1.32810 1.41808 1.67134 0.89626 0.89638 0.87516 0.80397 0.82498 0.90795 0.90447 0.89106 0.88510 0.90176 0.89752 0.91693 0.94936 0.93437 0.95402 0.88049 0.89722 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.68 36.01 0.35 -0.96 16 2 C 0.12 1.46 6.90 -82.00 -0.57 0.90 16 3 N -0.24 -3.15 11.42 33.81 0.39 -2.77 16 4 N -0.23 -2.69 11.48 30.53 0.35 -2.34 16 5 C 0.03 0.25 11.30 -17.42 -0.20 0.06 16 6 C -0.09 -0.75 8.24 -38.78 -0.32 -1.07 16 7 C -0.12 -1.40 5.34 -104.57 -0.56 -1.96 16 8 C 0.57 8.10 7.11 -12.19 -0.09 8.01 16 9 O -0.52 -9.00 15.06 5.35 0.08 -8.92 16 10 N -0.60 -8.07 3.33 -171.68 -0.57 -8.64 16 11 C 0.10 0.97 5.37 -2.44 -0.01 0.96 16 12 C -0.12 -1.34 6.21 -24.87 -0.15 -1.50 16 13 C 0.10 1.53 0.80 -89.93 -0.07 1.46 16 14 C 0.10 1.54 5.97 -3.33 -0.02 1.52 16 15 C 0.13 2.48 5.27 -4.06 -0.02 2.46 16 16 N -0.59 -13.90 2.99 -172.42 -0.52 -14.42 16 17 C -0.25 -6.61 9.68 -15.06 -0.15 -6.75 16 18 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 19 C 0.00 0.07 4.94 -17.43 -0.09 -0.02 16 20 N -0.90 -25.09 11.02 55.49 0.61 -24.48 16 21 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.14 3.08 5.50 -3.53 -0.02 3.06 16 26 C 0.03 0.61 6.76 37.31 0.25 0.86 16 27 O -0.38 -6.46 10.25 -35.23 -0.36 -6.82 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.11 1.33 5.75 -51.93 -0.30 1.03 16 31 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.16 1.00 6.45 -52.49 -0.34 0.66 16 33 H 0.07 0.60 6.89 -51.93 -0.36 0.24 16 34 H 0.08 0.70 7.48 -51.93 -0.39 0.31 16 35 H 0.09 0.93 8.01 -51.93 -0.42 0.51 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.46 6.03 -51.93 -0.31 1.15 16 38 H 0.08 1.49 7.59 -51.92 -0.39 1.09 16 39 H 0.06 1.19 7.65 -51.93 -0.40 0.79 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 2.55 5.93 -51.93 -0.31 2.24 16 44 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 45 H 0.05 0.84 6.24 -51.93 -0.32 0.52 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -31.65 356.67 -7.38 -39.03 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.04 Total: 0.87 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -1.66 Total: 7.02 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.26 Total: -52.64 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.28 Total: -15.74 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.65 -7.38 -39.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972450447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.658 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds