Wall clock time and date at job start Tue Mar 31 2020 17:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31924 * 120.16994 * 2 1 4 4 N 1.28283 * 122.32503 * 180.27292 * 3 2 1 5 5 C 1.31924 * 122.51014 * 359.72443 * 4 3 2 6 6 C 1.38499 * 119.97428 * 359.97438 * 5 4 3 7 7 C 1.39721 * 120.17356 * 179.73282 * 2 1 3 8 8 C 1.48139 * 121.14544 * 0.02800 * 7 2 1 9 9 O 1.21518 * 120.00124 * 44.25494 * 8 7 2 10 10 N 1.34783 * 119.99909 * 224.26266 * 8 7 2 11 11 C 1.47484 * 125.66348 * 354.57031 * 10 8 7 12 12 C 1.55017 * 104.89804 * 156.00764 * 11 10 8 13 13 C 1.54519 * 101.53414 * 36.37306 * 12 11 10 14 14 C 1.47184 * 125.66471 * 174.59859 * 10 8 7 15 15 C 1.52108 * 110.11312 * 207.08010 * 13 12 11 16 16 N 1.47299 * 108.67816 * 187.40909 * 15 13 12 17 17 C 1.36935 * 121.05136 * 229.29060 * 16 15 13 18 18 H 1.08002 * 120.00166 * 23.34974 * 17 16 15 19 19 C 1.38812 * 119.99617 * 203.34326 * 17 16 15 20 20 N 1.31619 * 119.99893 * 18.29284 * 19 17 16 21 21 Si 1.86800 * 120.00158 * 198.29067 * 19 17 16 22 22 H 1.48501 * 109.47441 * 84.98818 * 21 19 17 23 23 H 1.48503 * 109.46802 * 324.99197 * 21 19 17 24 24 H 1.48501 * 109.47334 * 204.99252 * 21 19 17 25 25 C 1.47160 * 117.88755 * 49.01457 * 16 15 13 26 26 C 1.53292 * 108.49727 * 309.05936 * 25 16 15 27 27 O 1.42057 * 110.33637 * 83.93676 * 13 12 11 28 28 H 1.09000 * 109.47065 * 263.34593 * 1 2 3 29 29 H 1.08998 * 109.47138 * 23.34076 * 1 2 3 30 30 H 1.09002 * 109.47189 * 143.34581 * 1 2 3 31 31 H 1.08002 * 120.00850 * 179.97438 * 5 4 3 32 32 H 1.07999 * 121.08971 * 179.97438 * 6 5 4 33 33 H 1.08996 * 110.35604 * 37.14712 * 11 10 8 34 34 H 1.09003 * 110.34931 * 274.86075 * 11 10 8 35 35 H 1.09005 * 111.01258 * 278.31158 * 12 11 10 36 36 H 1.09000 * 111.01411 * 154.43375 * 12 11 10 37 37 H 1.09002 * 109.90844 * 62.11082 * 14 10 8 38 38 H 1.09008 * 109.90417 * 300.85711 * 14 10 8 39 39 H 1.08995 * 109.58547 * 67.61734 * 15 13 12 40 40 H 1.09003 * 109.47439 * 307.12838 * 15 13 12 41 41 H 0.97008 * 119.99818 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.62939 * 68.75721 * 25 16 15 43 43 H 1.08995 * 109.63326 * 189.15309 * 25 16 15 44 44 H 1.09001 * 109.50963 * 172.90226 * 26 25 16 45 45 H 1.08995 * 109.51292 * 293.05658 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1405 0.0000 4 7 3.4519 1.1888 -0.0052 5 6 4.2023 0.1037 -0.0055 6 6 3.6091 -1.1478 0.0004 7 6 2.2093 -1.2079 0.0056 8 6 1.4983 -2.5075 0.0111 9 8 0.5457 -2.6821 -0.7230 10 7 1.9079 -3.4963 0.8303 11 6 3.1090 -3.4623 1.6855 12 6 2.8162 -4.4726 2.8242 13 6 2.0362 -5.5719 2.0689 14 6 1.2311 -4.7895 1.0196 15 6 1.0997 -6.2979 3.0227 16 7 0.5075 -7.4480 2.3181 17 6 -0.8435 -7.6700 2.3394 18 1 -1.5223 -6.8518 2.5301 19 6 -1.3407 -8.9465 2.1157 20 7 -0.5505 -9.9917 2.2405 21 14 -3.1312 -9.1811 1.6377 22 1 -3.2765 -9.0211 0.1685 23 1 -3.9655 -8.1669 2.3310 24 1 -3.5751 -10.5418 2.0338 25 6 1.4133 -8.3472 1.5856 26 6 2.3046 -7.4999 0.6705 27 8 2.9367 -6.4762 1.4449 28 1 -0.3633 -0.1191 1.0207 29 1 -0.3633 0.9435 -0.4072 30 1 -0.3634 -0.8245 -0.6135 31 1 5.2787 0.1914 -0.0104 32 1 4.2060 -2.0479 -0.0002 33 1 3.2554 -2.4625 2.0940 34 1 3.9867 -3.7735 1.1189 35 1 2.1997 -4.0189 3.6003 36 1 3.7415 -4.8678 3.2435 37 1 1.2132 -5.3403 0.0791 38 1 0.2142 -4.6274 1.3771 39 1 0.3099 -5.6200 3.3459 40 1 1.6625 -6.6486 3.8878 41 1 -0.8980 -10.8839 2.0845 42 1 2.0334 -8.8981 2.2929 43 1 0.8298 -9.0472 0.9877 44 1 3.0653 -8.1337 0.2147 45 1 1.6955 -7.0428 -0.1093 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972450447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:26 Heat of formation + Delta-G solvation = 1.561480 kcal Electronic energy + Delta-G solvation = -29472.614524 eV Core-core repulsion = 25491.258641 eV Total energy + Delta-G solvation = -3981.355883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.50427 -41.49070 -40.06943 -37.73837 -36.28255 -34.94124 -34.55451 -33.46542 -32.75857 -30.51348 -29.80811 -29.17991 -27.82988 -26.41955 -24.97984 -24.52682 -24.12685 -22.73100 -21.42004 -20.29799 -19.11269 -18.85262 -18.52586 -17.90033 -17.23463 -17.00116 -16.77950 -16.48225 -16.12877 -16.07324 -15.74361 -15.44395 -15.32178 -15.16235 -14.74867 -14.60237 -14.41443 -13.98830 -13.91938 -13.58676 -13.37042 -13.25724 -13.10513 -12.95892 -12.65302 -12.50688 -12.38514 -12.22599 -12.12408 -12.09958 -11.81502 -11.61558 -11.32867 -11.18593 -10.85422 -10.83921 -10.68150 -10.51772 -9.87873 -8.77872 -7.92497 -5.35959 -0.72086 -0.22913 1.33950 1.43628 1.46668 1.53206 1.62111 2.39819 2.44835 2.70503 2.89438 3.05653 3.21817 3.24600 3.38839 3.48646 3.50746 3.71015 3.76715 3.88631 4.18775 4.19174 4.28750 4.34051 4.38952 4.43511 4.48859 4.52449 4.55376 4.62951 4.71788 4.75553 4.78488 4.87558 4.91668 4.98337 5.01574 5.08068 5.14983 5.18186 5.26691 5.54017 5.61746 6.23289 6.25138 6.32616 6.77544 7.05036 7.54386 7.73847 8.24988 9.12750 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.003253 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.366926 B = 8606.526251 C = 9566.983666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.109 3.891 3 N -0.269 5.269 4 N -0.255 5.255 5 C 0.045 3.955 6 C -0.064 4.064 7 C -0.135 4.135 8 C 0.575 3.425 9 O -0.562 6.562 10 N -0.600 5.600 11 C 0.095 3.905 12 C -0.110 4.110 13 C 0.099 3.901 14 C 0.104 3.896 15 C 0.127 3.873 16 N -0.612 5.612 17 C -0.259 4.259 18 H 0.069 0.931 19 C -0.047 4.047 20 N -0.932 5.932 21 Si 0.961 3.039 22 H -0.287 1.287 23 H -0.271 1.271 24 H -0.294 1.294 25 C 0.142 3.858 26 C 0.048 3.952 27 O -0.368 6.368 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.225 0.775 32 H 0.190 0.810 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.033 0.967 41 H 0.251 0.749 42 H 0.006 0.994 43 H 0.070 0.930 44 H 0.112 0.888 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.308 16.792 -1.367 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.036 4.036 3 N -0.111 5.111 4 N -0.095 5.095 5 C -0.119 4.119 6 C -0.094 4.094 7 C -0.149 4.149 8 C 0.363 3.637 9 O -0.441 6.441 10 N -0.332 5.332 11 C -0.025 4.025 12 C -0.148 4.148 13 C 0.056 3.944 14 C -0.019 4.019 15 C 0.001 3.999 16 N -0.337 5.337 17 C -0.389 4.389 18 H 0.087 0.913 19 C -0.243 4.243 20 N -0.578 5.578 21 Si 0.790 3.210 22 H -0.214 1.214 23 H -0.196 1.196 24 H -0.220 1.220 25 C 0.016 3.984 26 C -0.029 4.029 27 O -0.287 6.287 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.241 0.759 32 H 0.207 0.793 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.136 0.864 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.024 0.976 43 H 0.088 0.912 44 H 0.130 0.870 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.853 18.283 -1.775 22.419 hybrid contribution -1.600 -2.519 -0.359 3.005 sum 11.253 15.765 -2.134 19.486 Atomic orbital electron populations 1.20960 0.86699 1.05320 1.04546 1.23118 0.99799 0.88783 0.91891 1.73057 1.02432 1.24166 1.11435 1.72785 0.99409 1.29678 1.07584 1.24979 1.04466 0.87882 0.94615 1.23150 0.92521 1.02144 0.91559 1.20860 0.96163 0.93680 1.04179 1.17883 0.83223 0.82930 0.79625 1.90777 1.29954 1.81846 1.41537 1.48527 1.27650 1.14964 1.42090 1.22863 0.87065 1.01401 0.91211 1.22829 1.02492 0.92543 0.96906 1.22206 0.90662 0.89551 0.91938 1.22285 0.96538 0.83357 0.99726 1.21463 0.95322 0.89768 0.93298 1.44365 1.03214 1.28598 1.57511 1.19464 0.82925 0.92817 1.43694 0.91341 1.25621 1.01276 0.95244 1.02143 1.70159 1.36670 0.97700 1.53265 0.85370 0.80779 0.76774 0.78082 1.21414 1.19572 1.21998 1.21337 0.91165 0.92158 0.93706 1.23213 0.97043 0.89594 0.93098 1.87677 1.32661 1.41455 1.66884 0.88963 0.88765 0.89475 0.75883 0.79310 0.87754 0.88187 0.87809 0.86427 0.92709 0.92064 0.91465 0.94953 0.93951 0.97562 0.91196 0.87041 0.94215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 9.68 71.24 0.69 -1.89 16 2 C 0.11 2.56 6.90 42.90 0.30 2.85 16 3 N -0.27 -6.57 11.42 -46.95 -0.54 -7.11 16 4 N -0.25 -5.29 11.48 -57.33 -0.66 -5.95 16 5 C 0.05 0.55 11.30 84.74 0.96 1.51 16 6 C -0.06 -0.83 8.24 22.79 0.19 -0.65 16 7 C -0.13 -2.85 5.34 -19.83 -0.11 -2.95 16 8 C 0.58 15.59 7.11 86.87 0.62 16.21 16 9 O -0.56 -19.91 15.06 -3.77 -0.06 -19.97 16 10 N -0.60 -14.83 3.33 -815.37 -2.72 -17.55 16 11 C 0.10 1.49 5.37 86.88 0.47 1.95 16 12 C -0.11 -2.06 6.21 31.80 0.20 -1.86 16 13 C 0.10 2.94 0.80 -10.35 -0.01 2.93 16 14 C 0.10 3.32 5.97 86.47 0.52 3.83 16 15 C 0.13 4.79 5.27 85.93 0.45 5.25 16 16 N -0.61 -29.27 2.99 -699.42 -2.09 -31.37 16 17 C -0.26 -13.81 9.68 84.03 0.81 -12.99 16 18 H 0.07 3.58 7.88 -2.91 -0.02 3.56 16 19 C -0.05 -2.58 4.94 84.86 0.42 -2.16 16 20 N -0.93 -53.49 11.02 21.65 0.24 -53.25 16 21 Si 0.96 44.42 29.59 68.60 2.03 46.45 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 C 0.14 6.56 5.50 86.35 0.48 7.03 16 26 C 0.05 1.73 6.76 72.08 0.49 2.21 16 27 O -0.37 -11.90 10.25 -148.97 -1.53 -13.42 16 28 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.09 2.28 5.75 -2.39 -0.01 2.27 16 31 H 0.22 0.57 8.06 -2.91 -0.02 0.54 16 32 H 0.19 1.22 6.45 -2.91 -0.02 1.20 16 33 H 0.10 1.08 6.89 -2.39 -0.02 1.07 16 34 H 0.10 1.20 7.48 -2.39 -0.02 1.18 16 35 H 0.10 1.73 8.01 -2.38 -0.02 1.71 16 36 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.05 2.03 6.03 -2.39 -0.01 2.01 16 38 H 0.06 2.22 7.59 -2.38 -0.02 2.20 16 39 H 0.07 2.45 7.65 -2.39 -0.02 2.43 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16 42 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.07 3.67 5.93 -2.39 -0.01 3.66 16 44 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 45 H 0.04 1.49 6.24 -2.39 -0.01 1.47 16 Total: -1.00 -72.97 356.67 2.16 -70.80 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.02 Total: 10.09 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 6.46 Total: 21.27 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -5.77 Total: -115.22 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.58 Total: -33.39 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -72.97 2.16 -70.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972450447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.365 kcal (2) G-P(sol) polarization free energy of solvation -72.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds