Wall clock time and date at job start Tue Mar 31 2020 16:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99842 * 2 1 4 4 H 1.48499 * 109.46785 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47247 * 300.00087 * 3 2 1 6 6 H 1.48498 * 109.47104 * 60.00003 * 3 2 1 7 7 C 1.38812 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99604 * 155.05366 * 7 2 1 9 9 N 1.36941 * 120.00065 * 335.04228 * 7 2 1 10 10 C 1.46895 * 120.68886 * 331.87001 * 9 7 2 11 11 C 1.52669 * 109.34484 * 235.30832 * 10 9 7 12 12 C 1.53186 * 109.42823 * 303.77394 * 11 10 9 13 13 C 1.52628 * 109.35647 * 58.92861 * 12 11 10 14 14 C 1.53457 * 113.68564 * 74.05815 * 13 12 11 15 15 N 1.47665 * 85.96885 * 91.17785 * 14 13 12 16 16 C 1.34771 * 134.45637 * 204.28430 * 15 14 13 17 17 O 1.21574 * 120.00573 * 180.02562 * 16 15 14 18 18 C 1.47730 * 119.99922 * 0.02562 * 16 15 14 19 19 C 1.40944 * 125.97292 * 180.02562 * 18 16 15 20 20 C 1.36168 * 107.94792 * 179.76798 * 19 18 16 21 21 N 1.35806 * 107.31440 * 0.53416 * 20 19 18 22 22 N 1.31835 * 125.96957 * 359.68918 * 18 16 15 23 23 C 1.47423 * 108.06802 * 179.17623 * 21 20 19 24 24 C 1.54640 * 102.35377 * 344.69103 * 23 21 20 25 25 O 1.36119 * 140.87579 * 180.69271 * 20 19 18 26 26 C 1.47677 * 91.09316 * 24.28815 * 15 14 13 27 27 C 1.47110 * 120.68626 * 152.14768 * 9 7 2 28 28 H 0.96996 * 119.99632 * 174.26731 * 1 2 3 29 29 H 1.08998 * 109.54168 * 355.23282 * 10 9 7 30 30 H 1.09004 * 109.53380 * 115.47627 * 10 9 7 31 31 H 1.08998 * 109.56540 * 183.71776 * 11 10 9 32 32 H 1.09005 * 109.34431 * 63.69096 * 11 10 9 33 33 H 1.09002 * 109.49120 * 298.95924 * 12 11 10 34 34 H 1.09005 * 109.48851 * 178.89230 * 12 11 10 35 35 H 1.09002 * 113.79306 * 205.44477 * 14 13 12 36 36 H 1.09000 * 113.79431 * 336.91271 * 14 13 12 37 37 H 1.08000 * 126.02632 * 359.79845 * 19 18 16 38 38 H 1.09003 * 110.83046 * 226.47076 * 23 21 20 39 39 H 1.09006 * 110.82466 * 102.90597 * 23 21 20 40 40 H 1.09002 * 110.85134 * 266.65948 * 24 23 21 41 41 H 1.09003 * 111.03183 * 143.10670 * 24 23 21 42 42 H 1.08997 * 113.79514 * 221.44885 * 26 15 14 43 43 H 1.08994 * 113.79584 * 89.97354 * 26 15 14 44 44 H 1.09002 * 109.63459 * 248.30727 * 27 9 7 45 45 H 1.09000 * 109.64288 * 8.91958 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0147 -1.2456 -0.3951 9 7 1.4214 -2.3330 0.4994 10 6 0.3970 -2.2437 1.5484 11 6 0.8164 -3.1021 2.7392 12 6 1.0561 -4.5408 2.2709 13 6 2.1427 -4.5495 1.1991 14 6 3.5562 -4.3239 1.7523 15 7 3.6346 -5.7943 1.8637 16 6 4.3509 -6.6464 2.6233 17 8 4.2036 -7.8463 2.4947 18 6 5.3151 -6.1225 3.6124 19 6 6.1260 -6.8952 4.4678 20 6 6.8750 -6.0422 5.2198 21 7 6.5355 -4.7785 4.8563 22 7 5.5719 -4.8504 3.8448 23 6 7.3233 -3.8397 5.6756 24 6 7.8489 -4.7507 6.8093 25 8 7.8297 -6.0500 6.1900 26 6 2.6137 -5.9569 0.8092 27 6 1.8061 -3.6627 0.0013 28 1 -0.4849 -0.8358 -0.0839 29 1 0.2917 -1.2069 1.8678 30 1 -0.5551 -2.6052 1.1597 31 1 0.0287 -3.0912 3.4924 32 1 1.7352 -2.7012 3.1675 33 1 0.1333 -4.9470 1.8567 34 1 1.3747 -5.1502 3.1167 35 1 4.2501 -3.9002 1.0263 36 1 3.5755 -3.8085 2.7125 37 1 6.1497 -7.9738 4.5176 38 1 6.6894 -3.0487 6.0763 39 1 8.1492 -3.4218 5.0999 40 1 7.1820 -4.7216 7.6710 41 1 8.8630 -4.4726 7.0963 42 1 1.8842 -6.7388 1.0201 43 1 3.0271 -6.0191 -0.1974 44 1 0.9771 -4.0989 -0.5560 45 1 2.6791 -3.5733 -0.6452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981816161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:11 Heat of formation + Delta-G solvation = 98.029387 kcal Electronic energy + Delta-G solvation = -29092.391327 eV Core-core repulsion = 25115.218607 eV Total energy + Delta-G solvation = -3977.172720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.54090 -40.59918 -39.05733 -37.89722 -36.02272 -33.58498 -32.82511 -30.95925 -30.44054 -29.50261 -29.07457 -26.32770 -26.03259 -25.20106 -24.16760 -22.59882 -22.32913 -21.61190 -20.59413 -19.08964 -17.92106 -17.81105 -17.35311 -17.18695 -16.60975 -16.03694 -15.73120 -15.51885 -15.22035 -14.59544 -14.45859 -14.13034 -14.04991 -13.73608 -13.51675 -13.43505 -13.13275 -13.12459 -12.81469 -12.65746 -12.35338 -11.94236 -11.76125 -11.63444 -11.40330 -11.13732 -10.98267 -10.73445 -10.42437 -10.26499 -10.11693 -9.99698 -9.86843 -9.75863 -9.45965 -9.26337 -8.76900 -8.54298 -8.36235 -6.88380 -6.07561 -3.24401 1.16614 1.57918 1.88647 2.42782 2.96827 3.36852 3.49418 3.51790 3.54370 3.65091 4.11300 4.16082 4.40075 4.51398 4.63938 4.68514 4.81349 4.92879 5.02204 5.09337 5.21365 5.30816 5.33771 5.49131 5.57501 5.61877 5.66042 5.75098 5.77097 5.90820 5.98735 6.00795 6.16556 6.26545 6.33794 6.43987 6.50032 6.58082 6.60605 6.68151 6.74726 7.08922 7.20881 7.24417 7.74864 7.99251 8.16274 8.56922 9.10024 9.83219 10.28060 11.20900 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012819 B = 0.003464 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.706782 B = 8080.372706 C = 9564.643069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.023 4.023 3 Si 1.067 2.933 4 H -0.292 1.292 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.347 4.347 8 H 0.056 0.944 9 N -0.595 5.595 10 C 0.149 3.851 11 C -0.136 4.136 12 C -0.083 4.083 13 C -0.106 4.106 14 C 0.132 3.868 15 N -0.626 5.626 16 C 0.619 3.381 17 O -0.535 6.535 18 C 0.060 3.940 19 C -0.215 4.215 20 C 0.230 3.770 21 N -0.413 5.413 22 N -0.205 5.205 23 C 0.097 3.903 24 C 0.042 3.958 25 O -0.280 6.280 26 C 0.118 3.882 27 C 0.165 3.835 28 H 0.270 0.730 29 H 0.079 0.921 30 H 0.016 0.984 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.164 0.836 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.131 0.869 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.023 0.977 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.070 -9.069 12.596 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.225 4.225 3 Si 0.897 3.103 4 H -0.219 1.219 5 H -0.222 1.222 6 H -0.217 1.217 7 C -0.476 4.476 8 H 0.074 0.926 9 N -0.319 5.319 10 C 0.023 3.977 11 C -0.175 4.175 12 C -0.120 4.120 13 C -0.108 4.108 14 C 0.010 3.990 15 N -0.360 5.360 16 C 0.406 3.594 17 O -0.410 6.410 18 C -0.107 4.107 19 C -0.245 4.245 20 C 0.063 3.937 21 N -0.210 5.210 22 N -0.034 5.034 23 C -0.024 4.024 24 C -0.034 4.034 25 O -0.187 6.187 26 C -0.004 4.004 27 C 0.038 3.962 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.182 0.818 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.148 0.852 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.041 0.959 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.847 -6.988 12.473 19.221 hybrid contribution 0.648 -2.206 0.298 2.318 sum 13.495 -9.194 12.771 20.730 Atomic orbital electron populations 1.70715 1.06639 1.30444 1.47868 1.25787 0.96507 1.01365 0.98854 0.83509 0.74396 0.75745 0.76657 1.21867 1.22155 1.21749 1.19984 0.97420 0.88306 1.41906 0.92598 1.44088 1.46482 1.00908 1.40394 1.20837 0.90326 0.99372 0.87149 1.21988 1.00845 0.95274 0.99378 1.21106 0.96906 0.97623 0.96379 1.22634 0.94935 0.94241 0.99008 1.23269 0.95410 0.78467 1.01883 1.50018 1.39936 1.09206 1.36837 1.16381 0.78492 0.84870 0.79703 1.90794 1.66679 1.14123 1.69439 1.21924 0.99336 0.90401 0.99073 1.20012 1.01494 1.00203 1.02798 1.20746 0.91852 0.88512 0.92615 1.50769 1.33169 1.06527 1.30571 1.77897 1.04371 1.18083 1.03057 1.23264 0.95368 0.93131 0.90601 1.24459 1.04955 0.78705 0.95300 1.87132 1.50532 1.33904 1.47141 1.23312 0.88152 0.98030 0.90914 1.20768 0.98060 0.86066 0.91326 0.91887 0.90219 0.96605 0.92943 0.92367 0.92025 0.93086 0.89534 0.89452 0.81807 0.86722 0.87585 0.88757 0.85159 0.90000 0.89367 0.95885 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.68 12.39 55.49 0.69 -25.99 16 2 C -0.02 -0.63 4.69 -17.43 -0.08 -0.71 16 3 Si 1.07 24.66 29.99 -169.99 -5.10 19.57 16 4 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.35 -9.22 9.50 -15.06 -0.14 -9.36 16 8 H 0.06 1.50 7.94 -52.49 -0.42 1.08 16 9 N -0.60 -13.99 2.86 -172.75 -0.49 -14.48 16 10 C 0.15 3.32 4.62 -4.00 -0.02 3.31 16 11 C -0.14 -2.47 5.99 -26.80 -0.16 -2.63 16 12 C -0.08 -1.35 5.02 -26.83 -0.13 -1.48 16 13 C -0.11 -1.73 0.87 -154.43 -0.13 -1.86 16 14 C 0.13 2.16 6.85 -3.17 -0.02 2.13 16 15 N -0.63 -10.04 3.45 -181.65 -0.63 -10.67 16 16 C 0.62 10.57 8.06 -12.38 -0.10 10.47 16 17 O -0.53 -10.21 17.63 5.30 0.09 -10.11 16 18 C 0.06 0.94 7.05 -82.96 -0.58 0.36 16 19 C -0.22 -3.01 10.60 -39.30 -0.42 -3.43 16 20 C 0.23 2.84 8.32 -16.54 -0.14 2.71 16 21 N -0.41 -5.08 5.01 -59.64 -0.30 -5.38 16 22 N -0.20 -3.14 11.09 33.32 0.37 -2.77 16 23 C 0.10 0.64 8.10 -2.67 -0.02 0.62 16 24 C 0.04 0.20 8.08 38.02 0.31 0.51 16 25 O -0.28 -2.71 11.19 -20.12 -0.23 -2.93 16 26 C 0.12 1.73 7.97 -3.18 -0.03 1.70 16 27 C 0.16 3.19 5.71 -3.81 -0.02 3.17 16 28 H 0.27 7.91 6.77 -40.82 -0.28 7.64 16 29 H 0.08 2.02 6.23 -51.93 -0.32 1.70 16 30 H 0.02 0.36 7.94 -51.93 -0.41 -0.05 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.11 7.37 -51.93 -0.38 0.72 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.81 8.02 -51.93 -0.42 0.40 16 35 H 0.09 1.44 7.97 -51.93 -0.41 1.03 16 36 H 0.09 1.51 6.73 -51.93 -0.35 1.16 16 37 H 0.16 2.09 8.06 -52.49 -0.42 1.67 16 38 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.13 0.18 8.14 -51.93 -0.42 -0.25 16 42 H 0.08 1.14 8.09 -51.93 -0.42 0.72 16 43 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 1.15 7.78 -51.93 -0.40 0.74 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -33.81 364.32 -8.21 -42.01 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.41 Total: -0.22 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -1.69 Total: 5.49 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.36 Total: -59.29 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.13 Total: -13.05 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.10 Total: 19.57 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.81 -8.21 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981816161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.044 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds