Wall clock time and date at job start Tue Mar 31 2020 16:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99842 * 2 1 4 4 H 1.48499 * 109.46785 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47247 * 300.00087 * 3 2 1 6 6 H 1.48498 * 109.47104 * 60.00003 * 3 2 1 7 7 C 1.38812 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99604 * 155.05366 * 7 2 1 9 9 N 1.36941 * 120.00065 * 335.04228 * 7 2 1 10 10 C 1.46895 * 120.68886 * 331.87001 * 9 7 2 11 11 C 1.52669 * 109.34484 * 235.30832 * 10 9 7 12 12 C 1.53186 * 109.42823 * 303.77394 * 11 10 9 13 13 C 1.52628 * 109.35647 * 58.92861 * 12 11 10 14 14 C 1.53457 * 113.68564 * 74.05815 * 13 12 11 15 15 N 1.47665 * 85.96885 * 91.17785 * 14 13 12 16 16 C 1.34771 * 134.45637 * 204.28430 * 15 14 13 17 17 O 1.21574 * 120.00573 * 180.02562 * 16 15 14 18 18 C 1.47730 * 119.99922 * 0.02562 * 16 15 14 19 19 C 1.40944 * 125.97292 * 180.02562 * 18 16 15 20 20 C 1.36168 * 107.94792 * 179.76798 * 19 18 16 21 21 N 1.35806 * 107.31440 * 0.53416 * 20 19 18 22 22 N 1.31835 * 125.96957 * 359.68918 * 18 16 15 23 23 C 1.47423 * 108.06802 * 179.17623 * 21 20 19 24 24 C 1.54640 * 102.35377 * 344.69103 * 23 21 20 25 25 O 1.36119 * 140.87579 * 180.69271 * 20 19 18 26 26 C 1.47677 * 91.09316 * 24.28815 * 15 14 13 27 27 C 1.47110 * 120.68626 * 152.14768 * 9 7 2 28 28 H 0.96996 * 119.99632 * 174.26731 * 1 2 3 29 29 H 1.08998 * 109.54168 * 355.23282 * 10 9 7 30 30 H 1.09004 * 109.53380 * 115.47627 * 10 9 7 31 31 H 1.08998 * 109.56540 * 183.71776 * 11 10 9 32 32 H 1.09005 * 109.34431 * 63.69096 * 11 10 9 33 33 H 1.09002 * 109.49120 * 298.95924 * 12 11 10 34 34 H 1.09005 * 109.48851 * 178.89230 * 12 11 10 35 35 H 1.09002 * 113.79306 * 205.44477 * 14 13 12 36 36 H 1.09000 * 113.79431 * 336.91271 * 14 13 12 37 37 H 1.08000 * 126.02632 * 359.79845 * 19 18 16 38 38 H 1.09003 * 110.83046 * 226.47076 * 23 21 20 39 39 H 1.09006 * 110.82466 * 102.90597 * 23 21 20 40 40 H 1.09002 * 110.85134 * 266.65948 * 24 23 21 41 41 H 1.09003 * 111.03183 * 143.10670 * 24 23 21 42 42 H 1.08997 * 113.79514 * 221.44885 * 26 15 14 43 43 H 1.08994 * 113.79584 * 89.97354 * 26 15 14 44 44 H 1.09002 * 109.63459 * 248.30727 * 27 9 7 45 45 H 1.09000 * 109.64288 * 8.91958 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0147 -1.2456 -0.3951 9 7 1.4214 -2.3330 0.4994 10 6 0.3970 -2.2437 1.5484 11 6 0.8164 -3.1021 2.7392 12 6 1.0561 -4.5408 2.2709 13 6 2.1427 -4.5495 1.1991 14 6 3.5562 -4.3239 1.7523 15 7 3.6346 -5.7943 1.8637 16 6 4.3509 -6.6464 2.6233 17 8 4.2036 -7.8463 2.4947 18 6 5.3151 -6.1225 3.6124 19 6 6.1260 -6.8952 4.4678 20 6 6.8750 -6.0422 5.2198 21 7 6.5355 -4.7785 4.8563 22 7 5.5719 -4.8504 3.8448 23 6 7.3233 -3.8397 5.6756 24 6 7.8489 -4.7507 6.8093 25 8 7.8297 -6.0500 6.1900 26 6 2.6137 -5.9569 0.8092 27 6 1.8061 -3.6627 0.0013 28 1 -0.4849 -0.8358 -0.0839 29 1 0.2917 -1.2069 1.8678 30 1 -0.5551 -2.6052 1.1597 31 1 0.0287 -3.0912 3.4924 32 1 1.7352 -2.7012 3.1675 33 1 0.1333 -4.9470 1.8567 34 1 1.3747 -5.1502 3.1167 35 1 4.2501 -3.9002 1.0263 36 1 3.5755 -3.8085 2.7125 37 1 6.1497 -7.9738 4.5176 38 1 6.6894 -3.0487 6.0763 39 1 8.1492 -3.4218 5.0999 40 1 7.1820 -4.7216 7.6710 41 1 8.8630 -4.4726 7.0963 42 1 1.8842 -6.7388 1.0201 43 1 3.0271 -6.0191 -0.1974 44 1 0.9771 -4.0989 -0.5560 45 1 2.6791 -3.5733 -0.6452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981816161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:10 Heat of formation + Delta-G solvation = 74.459229 kcal Electronic energy + Delta-G solvation = -29093.413406 eV Core-core repulsion = 25115.218607 eV Total energy + Delta-G solvation = -3978.194799 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.41145 -41.91373 -40.09834 -39.11044 -37.68323 -34.60258 -34.32610 -32.42316 -31.90108 -30.73964 -29.95161 -27.62537 -27.34706 -27.07654 -24.98710 -24.02820 -23.55776 -22.53696 -22.18800 -20.30468 -19.33424 -19.21887 -18.70326 -18.13845 -17.51082 -17.11286 -17.01181 -16.53754 -16.23302 -16.09825 -15.86321 -15.56871 -15.40759 -15.04774 -14.96400 -14.70268 -14.35158 -14.12138 -13.99548 -13.95864 -13.42169 -13.28812 -13.18295 -12.93960 -12.72094 -12.52390 -12.28997 -12.14891 -11.97095 -11.87300 -11.81159 -11.68326 -11.34334 -11.22439 -11.04566 -10.39903 -10.37047 -9.82534 -9.72306 -8.85358 -8.17750 -5.33143 0.08588 0.76106 0.88568 1.48170 1.61302 1.68270 1.83927 1.98376 2.15356 2.68122 2.92068 3.15489 3.26021 3.34979 3.62368 3.67465 3.77203 3.80210 3.90096 4.00425 4.19764 4.21239 4.26643 4.35723 4.40862 4.43071 4.49793 4.58269 4.59230 4.60572 4.66901 4.71301 4.77243 4.86770 4.88592 5.00043 5.04915 5.18188 5.20406 5.25663 5.36053 5.50666 5.75033 5.90976 6.26210 6.44636 6.46467 6.88876 7.11633 7.83570 8.28823 9.07343 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012819 B = 0.003464 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.706782 B = 8080.372706 C = 9564.643069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.074 4.074 3 Si 1.113 2.887 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.290 1.290 7 C -0.346 4.346 8 H 0.052 0.948 9 N -0.612 5.612 10 C 0.156 3.844 11 C -0.124 4.124 12 C -0.076 4.076 13 C -0.099 4.099 14 C 0.140 3.860 15 N -0.625 5.625 16 C 0.618 3.382 17 O -0.561 6.561 18 C 0.041 3.959 19 C -0.237 4.237 20 C 0.241 3.759 21 N -0.412 5.412 22 N -0.230 5.230 23 C 0.084 3.916 24 C 0.043 3.957 25 O -0.288 6.288 26 C 0.124 3.876 27 C 0.166 3.834 28 H 0.256 0.744 29 H 0.043 0.957 30 H 0.006 0.994 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.167 0.833 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.172 0.828 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.026 0.974 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.970 -9.225 14.157 22.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.271 4.271 3 Si 0.938 3.062 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.475 4.475 8 H 0.070 0.930 9 N -0.336 5.336 10 C 0.031 3.969 11 C -0.163 4.163 12 C -0.113 4.113 13 C -0.101 4.101 14 C 0.018 3.982 15 N -0.358 5.358 16 C 0.406 3.594 17 O -0.439 6.439 18 C -0.125 4.125 19 C -0.267 4.267 20 C 0.072 3.928 21 N -0.210 5.210 22 N -0.061 5.061 23 C -0.035 4.035 24 C -0.031 4.031 25 O -0.194 6.194 26 C 0.002 3.998 27 C 0.040 3.960 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.024 0.976 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.184 0.816 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.129 0.871 41 H 0.189 0.811 42 H 0.113 0.887 43 H 0.123 0.877 44 H 0.044 0.956 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.769 -7.157 14.049 21.604 hybrid contribution 0.156 -2.131 -0.107 2.139 sum 14.925 -9.288 13.942 22.437 Atomic orbital electron populations 1.70833 1.07595 1.29563 1.50782 1.27000 0.96566 1.04528 0.98984 0.82884 0.74344 0.72484 0.76453 1.19874 1.22135 1.21634 1.20207 0.97161 0.89510 1.40660 0.93024 1.44288 1.46518 1.01738 1.41047 1.20680 0.89906 0.98036 0.88321 1.21827 1.00922 0.95638 0.97878 1.21052 0.97340 0.96252 0.96661 1.22461 0.94957 0.94900 0.97831 1.23119 0.95192 0.78688 1.01244 1.49996 1.39948 1.08875 1.36946 1.16577 0.78512 0.84569 0.79775 1.90765 1.67695 1.15084 1.70373 1.21750 1.00010 0.91024 0.99701 1.20102 1.02405 1.00693 1.03536 1.20724 0.91360 0.88218 0.92499 1.51168 1.32225 1.07993 1.29621 1.77757 1.05859 1.17905 1.04586 1.23837 0.95585 0.93335 0.90724 1.24931 1.07835 0.75817 0.94548 1.87150 1.49258 1.36571 1.46462 1.23381 0.88023 0.96860 0.91489 1.20847 0.97962 0.84634 0.92583 0.93418 0.93834 0.97567 0.91002 0.93215 0.91007 0.92017 0.89936 0.90341 0.81574 0.85014 0.85814 0.87077 0.81073 0.88743 0.87707 0.95587 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.38 12.39 21.65 0.27 -56.11 16 2 C -0.07 -4.11 4.69 84.86 0.40 -3.71 16 3 Si 1.11 50.00 29.99 68.60 2.06 52.05 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.35 -18.50 9.50 84.03 0.80 -17.70 16 8 H 0.05 2.77 7.94 -2.91 -0.02 2.74 16 9 N -0.61 -28.95 2.86 -700.46 -2.00 -30.96 16 10 C 0.16 7.08 4.62 86.19 0.40 7.47 16 11 C -0.12 -4.42 5.99 30.55 0.18 -4.23 16 12 C -0.08 -2.35 5.02 30.53 0.15 -2.20 16 13 C -0.10 -3.12 0.87 -52.04 -0.05 -3.17 16 14 C 0.14 4.48 6.85 86.30 0.59 5.07 16 15 N -0.62 -19.47 3.45 -846.88 -2.92 -22.40 16 16 C 0.62 20.95 8.06 86.75 0.70 21.65 16 17 O -0.56 -21.38 17.63 -3.95 -0.07 -21.44 16 18 C 0.04 1.28 7.05 42.32 0.30 1.57 16 19 C -0.24 -6.60 10.60 22.45 0.24 -6.36 16 20 C 0.24 5.62 8.32 83.60 0.70 6.32 16 21 N -0.41 -9.45 5.01 -453.35 -2.27 -11.72 16 22 N -0.23 -6.92 11.09 -48.51 -0.54 -7.46 16 23 C 0.08 0.85 8.10 86.76 0.70 1.55 16 24 C 0.04 0.25 8.08 72.54 0.59 0.83 16 25 O -0.29 -4.82 11.19 -94.91 -1.06 -5.88 16 26 C 0.12 3.41 7.97 86.30 0.69 4.10 16 27 C 0.17 6.31 5.71 86.20 0.49 6.80 16 28 H 0.26 15.51 6.77 -92.71 -0.63 14.88 16 29 H 0.04 2.28 6.23 -2.39 -0.01 2.26 16 30 H 0.01 0.29 7.94 -2.38 -0.02 0.28 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.05 1.86 7.37 -2.38 -0.02 1.84 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.06 1.84 8.02 -2.38 -0.02 1.82 16 35 H 0.08 2.72 7.97 -2.39 -0.02 2.70 16 36 H 0.08 2.68 6.73 -2.39 -0.02 2.67 16 37 H 0.17 4.30 8.06 -2.91 -0.02 4.28 16 38 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.17 -0.40 8.14 -2.39 -0.02 -0.42 16 42 H 0.09 2.41 8.09 -2.39 -0.02 2.39 16 43 H 0.10 2.56 8.09 -2.39 -0.02 2.55 16 44 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 2.24 7.78 -2.39 -0.02 2.22 16 Total: -1.00 -75.04 364.32 1.48 -73.56 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 1.15 Total: 12.35 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 6.88 Total: 18.01 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -7.47 Total: -128.64 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -1.13 Total: -27.33 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.06 Total: 52.05 kcal Total: -75.04 1.48 -73.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981816161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.019 kcal (2) G-P(sol) polarization free energy of solvation -75.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds