Wall clock time and date at job start Tue Mar 31 2020 16:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.56814 * 113.78527 * 2 1 4 4 N 1.48107 * 105.10471 * 214.58992 * 3 2 1 5 5 C 1.36938 * 127.84807 * 219.44170 * 4 3 2 6 6 H 1.08002 * 120.00181 * 164.31766 * 5 4 3 7 7 C 1.38813 * 119.99862 * 344.31441 * 5 4 3 8 8 N 1.31626 * 119.99646 * 350.77936 * 7 5 4 9 9 Si 1.86793 * 120.00006 * 170.78196 * 7 5 4 10 10 H 1.48496 * 109.47235 * 94.80849 * 9 7 5 11 11 H 1.48502 * 109.47187 * 214.81094 * 9 7 5 12 12 H 1.48496 * 109.47095 * 334.80913 * 9 7 5 13 13 C 1.48115 * 104.30909 * 39.46016 * 4 3 2 14 14 C 1.54314 * 104.71698 * 320.22583 * 13 4 3 15 15 C 1.52996 * 112.08000 * 146.94671 * 14 13 4 16 16 C 1.53765 * 109.07421 * 271.63935 * 14 13 4 17 17 N 1.47207 * 106.40193 * 94.28950 * 16 14 13 18 18 C 1.34777 * 126.70119 * 211.36174 * 17 16 14 19 19 O 1.21589 * 120.00229 * 179.97438 * 18 17 16 20 20 C 1.47575 * 119.99873 * 359.95609 * 18 17 16 21 21 C 1.38049 * 119.72604 * 179.72804 * 20 18 17 22 22 N 1.34882 * 119.94675 * 179.70215 * 21 20 18 23 23 H 0.97005 * 120.30609 * 180.27331 * 22 21 20 24 24 C 1.34949 * 119.38338 * 0.56607 * 22 21 20 25 25 O 1.21862 * 120.26967 * 179.70207 * 24 22 21 26 26 C 1.41788 * 119.46088 * 359.72526 * 24 22 21 27 27 N 1.30609 * 120.03111 * 359.97438 * 26 24 22 28 28 C 1.47197 * 106.59686 * 31.32747 * 17 16 14 29 29 H 1.09001 * 109.46900 * 296.41512 * 1 2 3 30 30 H 1.09003 * 109.47049 * 56.41242 * 1 2 3 31 31 H 1.09004 * 109.47210 * 176.41775 * 1 2 3 32 32 H 1.09002 * 110.47334 * 95.51364 * 3 2 1 33 33 H 1.09001 * 110.02530 * 333.43977 * 3 2 1 34 34 H 0.97005 * 119.99518 * 179.97438 * 8 7 5 35 35 H 1.09000 * 110.39126 * 201.40900 * 13 4 3 36 36 H 1.09007 * 110.38777 * 79.03365 * 13 4 3 37 37 H 1.09000 * 109.47251 * 182.01035 * 15 14 13 38 38 H 1.09005 * 109.47028 * 302.01116 * 15 14 13 39 39 H 1.09000 * 109.46925 * 62.00714 * 15 14 13 40 40 H 1.08991 * 110.07213 * 335.05220 * 16 14 13 41 41 H 1.09004 * 110.11747 * 213.54564 * 16 14 13 42 42 H 1.08000 * 120.02462 * 359.97438 * 21 20 18 43 43 H 1.08000 * 119.98513 * 179.97438 * 26 24 22 44 44 H 1.09002 * 110.06943 * 87.91120 * 28 17 16 45 45 H 1.09004 * 110.07042 * 209.43783 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1624 1.4350 0.0000 4 7 3.3952 1.3134 -0.8118 5 6 4.6127 1.8971 -0.5832 6 1 5.4904 1.5349 -1.0979 7 6 4.7187 2.9544 0.3100 8 7 3.6324 3.5145 0.7986 9 14 6.4029 3.5822 0.8184 10 1 6.7841 4.7301 -0.0430 11 1 6.3605 4.0203 2.2367 12 1 7.4031 2.4953 0.6658 13 6 3.0122 0.4174 -1.9272 14 6 2.1155 -0.6570 -1.2768 15 6 1.0219 -1.1464 -2.2283 16 6 2.9987 -1.8094 -0.7706 17 7 3.2807 -1.5256 0.6461 18 6 4.3954 -1.8565 1.3275 19 8 4.5009 -1.5594 2.5018 20 6 5.4880 -2.5796 0.6484 21 6 6.6297 -2.9107 1.3502 22 7 7.6285 -3.5770 0.7355 23 1 8.4314 -3.8157 1.2248 24 6 7.5030 -3.9030 -0.5679 25 8 8.3977 -4.5001 -1.1407 26 6 6.3218 -3.5448 -1.2658 27 7 5.3658 -2.9050 -0.6473 28 6 2.1077 -0.8092 1.1729 29 1 -0.3633 0.4572 0.9204 30 1 -0.3633 0.5685 -0.8561 31 1 -0.3634 -1.0257 -0.0642 32 1 2.4060 1.7443 1.0164 33 1 1.4747 2.1459 -0.4579 34 1 3.7065 4.2531 1.4231 35 1 3.8976 -0.0420 -2.3666 36 1 2.4549 0.9698 -2.6839 37 1 0.3939 -1.8752 -1.7160 38 1 0.4119 -0.3008 -2.5463 39 1 1.4808 -1.6116 -3.1007 40 1 3.9290 -1.8445 -1.3373 41 1 2.4683 -2.7571 -0.8638 42 1 6.7212 -2.6404 2.3918 43 1 6.2126 -3.8011 -2.3092 44 1 1.3669 -1.5212 1.5368 45 1 2.4093 -0.1384 1.9775 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982491317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:44 Heat of formation + Delta-G solvation = -3.141665 kcal Electronic energy + Delta-G solvation = -30498.858803 eV Core-core repulsion = 26517.298977 eV Total energy + Delta-G solvation = -3981.559826 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.88542 -41.58692 -39.80751 -38.50587 -36.57981 -36.12619 -34.52873 -33.04236 -32.42158 -31.58234 -28.27402 -27.72263 -26.98904 -26.45642 -26.32538 -25.24135 -23.85138 -22.10890 -21.39945 -19.72643 -19.59377 -19.06572 -18.65687 -17.96937 -17.28178 -16.94780 -16.81182 -16.73366 -16.47081 -15.75979 -15.57630 -15.39623 -15.04763 -14.83005 -14.62630 -14.33463 -14.19595 -13.83436 -13.59097 -13.46648 -13.27237 -13.03166 -12.88935 -12.81537 -12.75452 -12.55440 -12.49542 -12.35248 -11.99338 -11.93783 -11.70235 -11.43930 -11.30369 -11.07112 -10.93967 -10.70593 -10.30106 -9.68659 -9.29828 -8.76126 -7.89185 -5.20990 -0.59140 0.07067 1.37072 1.38936 1.40271 1.46454 1.74833 2.12127 2.45237 2.62073 2.97861 3.10595 3.29990 3.49699 3.65110 3.75525 3.81198 3.84568 3.96113 4.20381 4.31614 4.44476 4.49891 4.66917 4.68899 4.83636 4.89177 4.95458 4.99169 5.04225 5.08997 5.13244 5.14776 5.25236 5.26158 5.31032 5.40098 5.46900 5.49628 5.52135 5.56480 5.70481 5.86551 6.23912 6.34112 6.53488 6.68890 7.05906 7.15374 7.74834 8.53664 9.23853 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009686 B = 0.005814 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.219161 B = 4815.064966 C = 6337.307824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C 0.181 3.819 4 N -0.609 5.609 5 C -0.217 4.217 6 H 0.067 0.933 7 C -0.060 4.060 8 N -0.943 5.943 9 Si 0.961 3.039 10 H -0.284 1.284 11 H -0.296 1.296 12 H -0.275 1.275 13 C 0.137 3.863 14 C -0.080 4.080 15 C -0.117 4.117 16 C 0.117 3.883 17 N -0.585 5.585 18 C 0.595 3.405 19 O -0.590 6.590 20 C -0.089 4.089 21 C 0.198 3.802 22 N -0.568 5.568 23 H 0.441 0.559 24 C 0.479 3.521 25 O -0.554 6.554 26 C 0.041 3.959 27 N -0.372 5.372 28 C 0.129 3.871 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.040 0.960 33 H -0.005 1.005 34 H 0.245 0.755 35 H 0.046 0.954 36 H 0.021 0.979 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.210 0.790 43 H 0.218 0.782 44 H 0.086 0.914 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.897 -17.433 -2.826 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 C 0.055 3.945 4 N -0.332 5.332 5 C -0.346 4.346 6 H 0.085 0.915 7 C -0.254 4.254 8 N -0.592 5.592 9 Si 0.790 3.210 10 H -0.211 1.211 11 H -0.223 1.223 12 H -0.200 1.200 13 C 0.011 3.989 14 C -0.082 4.082 15 C -0.175 4.175 16 C -0.005 4.005 17 N -0.313 5.313 18 C 0.384 3.616 19 O -0.472 6.472 20 C -0.212 4.212 21 C 0.061 3.939 22 N -0.201 5.201 23 H 0.284 0.716 24 C 0.276 3.724 25 O -0.432 6.432 26 C -0.149 4.149 27 N -0.087 5.087 28 C 0.006 3.994 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.013 0.987 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.226 0.774 43 H 0.235 0.765 44 H 0.103 0.897 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.929 -17.187 -2.752 17.512 hybrid contribution 2.092 1.068 1.281 2.676 sum 0.163 -16.119 -1.471 16.186 Atomic orbital electron populations 1.21566 0.90514 1.03099 1.02017 1.22884 0.96643 0.95881 0.93774 1.21768 0.85983 0.91298 0.95428 1.44919 1.08006 1.54949 1.25315 1.19083 0.85146 1.09082 1.21318 0.91510 1.25500 0.99824 0.97939 1.02132 1.70069 1.27470 1.26017 1.35612 0.85322 0.80457 0.78225 0.76962 1.21129 1.22313 1.19982 1.21931 0.95957 0.90932 0.90054 1.22399 0.95870 0.94697 0.95268 1.21637 0.96405 1.01362 0.98093 1.22627 1.01046 0.96632 0.80189 1.47997 1.15883 1.54300 1.13129 1.17177 0.80791 0.78659 0.84996 1.90746 1.80682 1.58537 1.17264 1.20081 0.97161 1.12129 0.91798 1.23282 0.85011 0.85024 1.00630 1.43522 1.19244 1.44862 1.12488 0.71562 1.18897 0.90501 0.81275 0.81765 1.90986 1.43048 1.42730 1.66416 1.25211 0.87845 0.98806 1.03025 1.67882 1.29348 1.04231 1.07208 1.21963 0.86638 0.94518 0.96287 0.92989 0.91706 0.89508 0.94181 0.98700 0.94545 0.93545 0.96110 0.90251 0.92175 0.91078 0.87669 0.89770 0.77359 0.76537 0.89652 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.91 7.65 71.98 0.55 -2.36 16 2 C -0.09 -3.05 1.15 -49.88 -0.06 -3.11 16 3 C 0.18 8.71 5.06 87.41 0.44 9.15 16 4 N -0.61 -30.65 3.38 -683.56 -2.31 -32.96 16 5 C -0.22 -12.27 10.35 84.03 0.87 -11.40 16 6 H 0.07 3.72 7.85 -2.91 -0.02 3.70 16 7 C -0.06 -3.52 5.40 84.86 0.46 -3.06 16 8 N -0.94 -57.96 10.87 21.65 0.24 -57.73 16 9 Si 0.96 47.53 29.56 68.60 2.03 49.56 16 10 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 11 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 12 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.14 5.35 6.24 86.51 0.54 5.89 16 14 C -0.08 -2.41 1.06 -50.77 -0.05 -2.46 16 15 C -0.12 -2.42 7.50 71.98 0.54 -1.88 16 16 C 0.12 3.38 5.35 86.50 0.46 3.85 16 17 N -0.59 -20.63 3.32 -818.97 -2.72 -23.34 16 18 C 0.59 21.84 7.85 86.71 0.68 22.52 16 19 O -0.59 -25.04 16.51 -4.00 -0.07 -25.10 16 20 C -0.09 -2.52 6.69 41.21 0.28 -2.24 16 21 C 0.20 4.06 10.77 84.18 0.91 4.97 16 22 N -0.57 -9.53 5.28 -316.87 -1.67 -11.21 16 23 H 0.44 4.51 8.92 -92.70 -0.83 3.68 16 24 C 0.48 10.49 7.74 85.09 0.66 11.15 16 25 O -0.55 -15.17 17.95 -4.87 -0.09 -15.26 16 26 C 0.04 0.86 11.23 85.75 0.96 1.82 16 27 N -0.37 -9.48 6.64 -183.47 -1.22 -10.69 16 28 C 0.13 4.60 6.08 86.50 0.53 5.13 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.61 7.19 -2.39 -0.02 1.59 16 31 H 0.09 1.65 7.06 -2.38 -0.02 1.63 16 32 H 0.04 2.28 5.88 -2.39 -0.01 2.26 16 33 H 0.00 -0.25 8.03 -2.39 -0.02 -0.27 16 34 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 35 H 0.05 1.78 7.42 -2.39 -0.02 1.77 16 36 H 0.02 0.82 7.97 -2.38 -0.02 0.81 16 37 H 0.08 1.29 7.06 -2.39 -0.02 1.27 16 38 H 0.06 1.27 7.20 -2.38 -0.02 1.25 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.11 3.18 4.64 -2.39 -0.01 3.17 16 41 H 0.08 1.95 7.88 -2.39 -0.02 1.94 16 42 H 0.21 3.47 7.58 -2.91 -0.02 3.44 16 43 H 0.22 3.23 8.06 -2.91 -0.02 3.21 16 44 H 0.09 2.50 7.88 -2.39 -0.02 2.48 16 45 H 0.04 1.65 7.23 -2.38 -0.02 1.63 16 Total: -1.00 -80.28 357.39 2.16 -78.12 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.21 Total: 10.65 kcal Atomic # 6 Polarization: 30.19 SS G_CDS: 7.76 Total: 37.96 kcal Atomic # 7 Polarization: -128.24 SS G_CDS: -7.69 Total: -135.93 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -0.15 Total: -40.36 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -80.28 2.16 -78.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982491317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.979 kcal (2) G-P(sol) polarization free energy of solvation -80.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds