Wall clock time and date at job start Tue Mar 31 2020 16:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99523 * 2 1 4 4 H 1.48494 * 109.47781 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47299 * 119.99999 * 3 2 1 6 6 H 1.48500 * 109.47101 * 239.99363 * 3 2 1 7 7 C 1.38808 * 120.00263 * 180.27084 * 2 1 3 8 8 H 1.08000 * 120.00340 * 208.31989 * 7 2 1 9 9 N 1.36938 * 119.99838 * 28.32184 * 7 2 1 10 10 C 1.47369 * 125.58145 * 19.14315 * 9 7 2 11 11 C 1.55121 * 104.69429 * 155.19534 * 10 9 7 12 12 C 1.54913 * 101.65803 * 37.39939 * 11 10 9 13 13 N 1.46507 * 112.77888 * 86.26290 * 12 11 10 14 14 C 1.34779 * 119.99519 * 64.06173 * 13 12 11 15 15 O 1.21567 * 119.99878 * 0.02562 * 14 13 12 16 16 C 1.47720 * 119.99479 * 180.02562 * 14 13 12 17 17 C 1.40941 * 125.96826 * 179.72061 * 16 14 13 18 18 C 1.36180 * 107.94700 * 179.75018 * 17 16 14 19 19 N 1.35798 * 107.30923 * 0.76397 * 18 17 16 20 20 N 1.31842 * 125.97425 * 0.02562 * 16 14 13 21 21 C 1.47435 * 108.06620 * 178.98757 * 19 18 17 22 22 C 1.54638 * 102.35450 * 344.74635 * 21 19 18 23 23 O 1.36120 * 140.88158 * 180.75769 * 18 17 16 24 24 C 1.55235 * 108.84484 * 212.72028 * 12 11 10 25 25 C 1.54227 * 106.81993 * 113.67180 * 24 12 11 26 26 C 1.54755 * 104.15624 * 334.35472 * 25 24 12 27 27 C 1.46984 * 125.57998 * 199.44360 * 9 7 2 28 28 H 1.09003 * 111.80686 * 59.08463 * 27 9 7 29 29 H 0.97000 * 119.99415 * 185.69617 * 1 2 3 30 30 H 1.09000 * 110.36634 * 274.13359 * 10 9 7 31 31 H 1.08999 * 110.36890 * 36.45902 * 10 9 7 32 32 H 1.09007 * 111.18430 * 279.25250 * 11 10 9 33 33 H 1.08993 * 110.89269 * 155.42615 * 11 10 9 34 34 H 0.97001 * 120.00021 * 244.06929 * 13 12 11 35 35 H 1.07997 * 126.03173 * 359.88529 * 17 16 14 36 36 H 1.09001 * 110.82622 * 102.95896 * 21 19 18 37 37 H 1.08999 * 110.82475 * 226.51920 * 21 19 18 38 38 H 1.09004 * 110.84625 * 266.64365 * 22 21 19 39 39 H 1.09005 * 111.02793 * 143.09605 * 22 21 19 40 40 H 1.08997 * 110.52520 * 354.00033 * 24 12 11 41 41 H 1.09000 * 109.40545 * 232.72466 * 24 12 11 42 42 H 1.09004 * 110.49066 * 215.68407 * 25 24 12 43 43 H 1.09003 * 110.60529 * 93.08049 * 25 24 12 44 44 H 1.08997 * 110.67365 * 279.38013 * 26 25 24 45 45 H 1.09005 * 110.81135 * 156.30942 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6966 1.2125 6 1 3.1039 1.6965 -1.2124 7 6 2.0103 -1.2021 -0.0057 8 1 2.9934 -1.2602 0.4377 9 7 1.4486 -2.3143 -0.5736 10 6 0.3364 -2.3147 -1.5405 11 6 0.5003 -3.6409 -2.3282 12 6 0.9728 -4.6096 -1.2155 13 7 -0.1404 -5.2164 -0.4813 14 6 -1.0022 -6.0334 -1.1187 15 8 -0.8555 -6.2671 -2.3027 16 6 -2.1249 -6.6448 -0.3786 17 6 -3.0990 -7.5089 -0.9179 18 6 -3.9526 -7.8568 0.0846 19 7 -3.5372 -7.2181 1.2087 20 7 -2.3942 -6.4731 0.9006 21 6 -4.4655 -7.5641 2.3006 22 6 -5.6689 -8.1616 1.5350 23 8 -5.0575 -8.6178 0.3143 24 6 1.9367 -5.6555 -1.8373 25 6 3.3285 -5.3998 -1.2241 26 6 3.2983 -3.9043 -0.8273 27 6 1.8521 -3.7036 -0.3138 28 1 1.7559 -3.9628 0.7405 29 1 -0.4849 -0.8359 0.0834 30 1 -0.6202 -2.2962 -1.0183 31 1 0.4187 -1.4614 -2.2137 32 1 1.2555 -3.5450 -3.1083 33 1 -0.4523 -3.9640 -2.7479 34 1 -0.2572 -5.0301 0.4635 35 1 -3.1570 -7.8390 -1.9445 36 1 -4.0225 -8.3055 2.9656 37 1 -4.7619 -6.6732 2.8542 38 1 -6.4179 -7.3963 1.3314 39 1 -6.1073 -8.9948 2.0843 40 1 1.9792 -5.5398 -2.9203 41 1 1.5955 -6.6589 -1.5826 42 1 4.1100 -5.5833 -1.9615 43 1 3.4809 -6.0250 -0.3443 44 1 3.4899 -3.2722 -1.6944 45 1 4.0195 -3.6988 -0.0362 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991063260.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:53 Heat of formation + Delta-G solvation = 63.440692 kcal Electronic energy + Delta-G solvation = -29198.066990 eV Core-core repulsion = 25219.394392 eV Total energy + Delta-G solvation = -3978.672599 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.53574 -40.24289 -38.96770 -37.79644 -34.44703 -33.66052 -33.43980 -31.56991 -30.35748 -29.57090 -29.06041 -26.55400 -26.33009 -24.54496 -23.74588 -22.97991 -21.65028 -20.86650 -20.10671 -19.42627 -18.87954 -17.99897 -17.41883 -17.23562 -16.55792 -16.16960 -15.65390 -15.24327 -15.16270 -14.76182 -14.38129 -14.23452 -13.81766 -13.63645 -13.56644 -13.42322 -13.10145 -12.96146 -12.70199 -12.55985 -11.90263 -11.71553 -11.62637 -11.48727 -11.10668 -10.94641 -10.64754 -10.57575 -10.42278 -10.28544 -10.15684 -9.96376 -9.89917 -9.74898 -9.46928 -9.43980 -8.75347 -8.67727 -8.33992 -6.89643 -6.05410 -3.11909 1.17330 1.57430 1.93028 2.47670 3.29751 3.43714 3.51854 3.56014 3.56823 3.74022 4.12460 4.21882 4.49737 4.60711 4.65832 4.79230 4.81757 5.02245 5.08597 5.12930 5.25316 5.35742 5.38530 5.61802 5.67293 5.71018 5.78371 5.87292 6.05714 6.07698 6.17665 6.18582 6.23255 6.36254 6.40003 6.49250 6.57230 6.62251 6.73201 6.88963 6.98514 7.11025 7.15605 7.22854 7.75567 7.86983 8.33732 8.53462 9.05823 9.85691 10.42048 11.25990 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014657 B = 0.003263 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.902294 B = 8578.111834 C = 9751.741776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.025 4.025 3 Si 1.063 2.937 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.334 4.334 8 H 0.064 0.936 9 N -0.594 5.594 10 C 0.144 3.856 11 C -0.133 4.133 12 C 0.159 3.841 13 N -0.687 5.687 14 C 0.602 3.398 15 O -0.519 6.519 16 C 0.059 3.941 17 C -0.212 4.212 18 C 0.230 3.770 19 N -0.413 5.413 20 N -0.215 5.215 21 C 0.097 3.903 22 C 0.041 3.959 23 O -0.279 6.279 24 C -0.110 4.110 25 C -0.124 4.124 26 C -0.125 4.125 27 C 0.160 3.840 28 H 0.046 0.954 29 H 0.268 0.732 30 H 0.024 0.976 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.408 0.592 35 H 0.166 0.834 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.130 0.870 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.324 -18.131 3.286 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.227 4.227 3 Si 0.893 3.107 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.462 4.462 8 H 0.081 0.919 9 N -0.319 5.319 10 C 0.019 3.981 11 C -0.172 4.172 12 C 0.073 3.927 13 N -0.337 5.337 14 C 0.384 3.616 15 O -0.393 6.393 16 C -0.108 4.108 17 C -0.242 4.242 18 C 0.063 3.937 19 N -0.211 5.211 20 N -0.045 5.045 21 C -0.023 4.023 22 C -0.035 4.035 23 O -0.186 6.186 24 C -0.149 4.149 25 C -0.162 4.162 26 C -0.165 4.165 27 C 0.052 3.948 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.243 0.757 35 H 0.183 0.817 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.148 0.852 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.109 -16.102 3.504 18.366 hybrid contribution -0.387 -1.963 0.289 2.022 sum -8.495 -18.065 3.793 20.320 Atomic orbital electron populations 1.70776 1.06709 1.30202 1.47750 1.25732 0.96400 1.01108 0.99432 0.83550 0.74827 0.76188 0.76138 1.21219 1.22101 1.22121 1.19675 0.99504 0.88114 1.38881 0.91854 1.44585 1.39923 0.99809 1.47555 1.21604 0.91306 0.94370 0.90810 1.23183 1.01503 0.95957 0.96567 1.21938 0.85407 0.92228 0.93161 1.45745 1.27712 1.46372 1.13826 1.16730 0.80099 0.78825 0.85904 1.90799 1.73050 1.61367 1.14089 1.22088 0.97906 0.99610 0.91235 1.20052 0.97696 1.07243 0.99202 1.20757 0.89938 0.92608 0.90426 1.50679 1.22634 1.38421 1.09320 1.77747 0.98014 1.14211 1.14493 1.23252 0.87050 1.02796 0.89230 1.24458 0.94841 1.01531 0.82643 1.87135 1.36707 1.51972 1.42831 1.22534 0.94000 0.98061 1.00277 1.22354 0.96397 0.97589 0.99907 1.22850 0.98057 0.94359 1.01253 1.21820 0.91823 0.85851 0.95267 0.93603 0.92052 0.95791 0.93119 0.90632 0.91033 0.75651 0.81668 0.87657 0.86800 0.88714 0.85173 0.90852 0.92134 0.92048 0.92254 0.90779 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.67 12.99 55.49 0.72 -26.95 16 2 C -0.02 -0.70 5.08 -17.43 -0.09 -0.79 16 3 Si 1.06 25.44 30.00 -169.99 -5.10 20.34 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.33 -9.25 9.71 -15.06 -0.15 -9.40 16 8 H 0.06 1.75 7.97 -52.49 -0.42 1.33 16 9 N -0.59 -14.73 2.91 -160.97 -0.47 -15.19 16 10 C 0.14 3.45 5.36 -2.44 -0.01 3.44 16 11 C -0.13 -2.64 5.83 -24.60 -0.14 -2.79 16 12 C 0.16 2.90 0.77 -128.49 -0.10 2.80 16 13 N -0.69 -11.87 5.27 -45.51 -0.24 -12.11 16 14 C 0.60 10.36 7.04 -12.38 -0.09 10.27 16 15 O -0.52 -9.81 14.84 5.31 0.08 -9.74 16 16 C 0.06 0.92 7.09 -82.97 -0.59 0.34 16 17 C -0.21 -2.98 10.60 -39.30 -0.42 -3.40 16 18 C 0.23 2.84 8.32 -16.54 -0.14 2.71 16 19 N -0.41 -5.00 5.01 -59.63 -0.30 -5.29 16 20 N -0.21 -3.24 12.39 33.31 0.41 -2.83 16 21 C 0.10 0.61 8.10 -2.67 -0.02 0.58 16 22 C 0.04 0.19 8.08 38.02 0.31 0.50 16 23 O -0.28 -2.70 11.19 -20.12 -0.23 -2.92 16 24 C -0.11 -1.78 5.34 -24.91 -0.13 -1.91 16 25 C -0.12 -1.86 6.84 -25.17 -0.17 -2.04 16 26 C -0.13 -2.28 6.22 -24.87 -0.15 -2.43 16 27 C 0.16 3.28 3.61 -65.60 -0.24 3.04 16 28 H 0.05 0.97 7.97 -51.93 -0.41 0.56 16 29 H 0.27 8.20 6.19 -40.82 -0.25 7.95 16 30 H 0.02 0.62 6.83 -51.93 -0.35 0.27 16 31 H 0.05 1.32 8.04 -51.93 -0.42 0.90 16 32 H 0.08 1.45 7.60 -51.93 -0.39 1.05 16 33 H 0.07 1.43 6.84 -51.93 -0.36 1.07 16 34 H 0.41 6.89 8.18 -40.82 -0.33 6.56 16 35 H 0.17 2.13 8.06 -52.49 -0.42 1.70 16 36 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.13 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.07 1.18 7.40 -51.93 -0.38 0.80 16 41 H 0.06 0.97 7.48 -51.93 -0.39 0.58 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 361.54 15.07 5.45 5.45 Total: -1.00 -34.48 361.54 -8.11 -42.59 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.31 Total: 5.72 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -2.13 Total: 0.94 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: 0.13 Total: -62.38 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.15 Total: -12.66 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.10 Total: 20.34 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.48 -8.11 -42.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991063260.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.031 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds