Wall clock time and date at job start Tue Mar 31 2020 16:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99523 * 2 1 4 4 H 1.48494 * 109.47781 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47299 * 119.99999 * 3 2 1 6 6 H 1.48500 * 109.47101 * 239.99363 * 3 2 1 7 7 C 1.38808 * 120.00263 * 180.27084 * 2 1 3 8 8 H 1.08000 * 120.00340 * 208.31989 * 7 2 1 9 9 N 1.36938 * 119.99838 * 28.32184 * 7 2 1 10 10 C 1.47369 * 125.58145 * 19.14315 * 9 7 2 11 11 C 1.55121 * 104.69429 * 155.19534 * 10 9 7 12 12 C 1.54913 * 101.65803 * 37.39939 * 11 10 9 13 13 N 1.46507 * 112.77888 * 86.26290 * 12 11 10 14 14 C 1.34779 * 119.99519 * 64.06173 * 13 12 11 15 15 O 1.21567 * 119.99878 * 0.02562 * 14 13 12 16 16 C 1.47720 * 119.99479 * 180.02562 * 14 13 12 17 17 C 1.40941 * 125.96826 * 179.72061 * 16 14 13 18 18 C 1.36180 * 107.94700 * 179.75018 * 17 16 14 19 19 N 1.35798 * 107.30923 * 0.76397 * 18 17 16 20 20 N 1.31842 * 125.97425 * 0.02562 * 16 14 13 21 21 C 1.47435 * 108.06620 * 178.98757 * 19 18 17 22 22 C 1.54638 * 102.35450 * 344.74635 * 21 19 18 23 23 O 1.36120 * 140.88158 * 180.75769 * 18 17 16 24 24 C 1.55235 * 108.84484 * 212.72028 * 12 11 10 25 25 C 1.54227 * 106.81993 * 113.67180 * 24 12 11 26 26 C 1.54755 * 104.15624 * 334.35472 * 25 24 12 27 27 C 1.46984 * 125.57998 * 199.44360 * 9 7 2 28 28 H 1.09003 * 111.80686 * 59.08463 * 27 9 7 29 29 H 0.97000 * 119.99415 * 185.69617 * 1 2 3 30 30 H 1.09000 * 110.36634 * 274.13359 * 10 9 7 31 31 H 1.08999 * 110.36890 * 36.45902 * 10 9 7 32 32 H 1.09007 * 111.18430 * 279.25250 * 11 10 9 33 33 H 1.08993 * 110.89269 * 155.42615 * 11 10 9 34 34 H 0.97001 * 120.00021 * 244.06929 * 13 12 11 35 35 H 1.07997 * 126.03173 * 359.88529 * 17 16 14 36 36 H 1.09001 * 110.82622 * 102.95896 * 21 19 18 37 37 H 1.08999 * 110.82475 * 226.51920 * 21 19 18 38 38 H 1.09004 * 110.84625 * 266.64365 * 22 21 19 39 39 H 1.09005 * 111.02793 * 143.09605 * 22 21 19 40 40 H 1.08997 * 110.52520 * 354.00033 * 24 12 11 41 41 H 1.09000 * 109.40545 * 232.72466 * 24 12 11 42 42 H 1.09004 * 110.49066 * 215.68407 * 25 24 12 43 43 H 1.09003 * 110.60529 * 93.08049 * 25 24 12 44 44 H 1.08997 * 110.67365 * 279.38013 * 26 25 24 45 45 H 1.09005 * 110.81135 * 156.30942 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6966 1.2125 6 1 3.1039 1.6965 -1.2124 7 6 2.0103 -1.2021 -0.0057 8 1 2.9934 -1.2602 0.4377 9 7 1.4486 -2.3143 -0.5736 10 6 0.3364 -2.3147 -1.5405 11 6 0.5003 -3.6409 -2.3282 12 6 0.9728 -4.6096 -1.2155 13 7 -0.1404 -5.2164 -0.4813 14 6 -1.0022 -6.0334 -1.1187 15 8 -0.8555 -6.2671 -2.3027 16 6 -2.1249 -6.6448 -0.3786 17 6 -3.0990 -7.5089 -0.9179 18 6 -3.9526 -7.8568 0.0846 19 7 -3.5372 -7.2181 1.2087 20 7 -2.3942 -6.4731 0.9006 21 6 -4.4655 -7.5641 2.3006 22 6 -5.6689 -8.1616 1.5350 23 8 -5.0575 -8.6178 0.3143 24 6 1.9367 -5.6555 -1.8373 25 6 3.3285 -5.3998 -1.2241 26 6 3.2983 -3.9043 -0.8273 27 6 1.8521 -3.7036 -0.3138 28 1 1.7559 -3.9628 0.7405 29 1 -0.4849 -0.8359 0.0834 30 1 -0.6202 -2.2962 -1.0183 31 1 0.4187 -1.4614 -2.2137 32 1 1.2555 -3.5450 -3.1083 33 1 -0.4523 -3.9640 -2.7479 34 1 -0.2572 -5.0301 0.4635 35 1 -3.1570 -7.8390 -1.9445 36 1 -4.0225 -8.3055 2.9656 37 1 -4.7619 -6.6732 2.8542 38 1 -6.4179 -7.3963 1.3314 39 1 -6.1073 -8.9948 2.0843 40 1 1.9792 -5.5398 -2.9203 41 1 1.5955 -6.6589 -1.5826 42 1 4.1100 -5.5833 -1.9615 43 1 3.4809 -6.0250 -0.3443 44 1 3.4899 -3.2722 -1.6944 45 1 4.0195 -3.6988 -0.0362 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991063260.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:52 Heat of formation + Delta-G solvation = 37.832007 kcal Electronic energy + Delta-G solvation = -29199.177466 eV Core-core repulsion = 25219.394392 eV Total energy + Delta-G solvation = -3979.783075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.41771 -41.68173 -40.08678 -39.08045 -36.28043 -34.94728 -34.31820 -33.44893 -31.71489 -30.89206 -29.96084 -28.24187 -27.83624 -25.70566 -25.48488 -23.85763 -22.62097 -22.39405 -21.65550 -20.87297 -20.32932 -19.40492 -18.89706 -18.16297 -17.57328 -17.40222 -16.76205 -16.53338 -16.28205 -16.17533 -15.63958 -15.59265 -15.27715 -15.22574 -14.99766 -14.67349 -14.35457 -14.22918 -14.00205 -13.53713 -13.23330 -13.18058 -13.17031 -12.68541 -12.42643 -12.31238 -12.25448 -12.15338 -11.98513 -11.92534 -11.86796 -11.68729 -11.52614 -11.33003 -11.21584 -10.46681 -10.38056 -10.09479 -9.73095 -8.98411 -8.28300 -5.31824 0.07620 0.74524 0.90967 1.57935 1.61511 1.66667 1.84732 2.15890 2.16500 2.65356 2.96991 3.18564 3.24772 3.36344 3.50111 3.76228 3.79591 3.80326 3.84417 4.05607 4.20657 4.24267 4.27146 4.35116 4.41272 4.42783 4.45543 4.53922 4.59542 4.70291 4.72735 4.78051 4.82393 4.94721 5.04649 5.08149 5.13113 5.16923 5.25068 5.29745 5.51389 5.53727 5.73512 5.75603 6.17261 6.32997 6.43323 6.90763 6.97238 7.72857 8.32842 9.01794 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014657 B = 0.003263 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.902294 B = 8578.111834 C = 9751.741776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.080 4.080 3 Si 1.115 2.885 4 H -0.295 1.295 5 H -0.273 1.273 6 H -0.281 1.281 7 C -0.335 4.335 8 H 0.064 0.936 9 N -0.609 5.609 10 C 0.154 3.846 11 C -0.119 4.119 12 C 0.166 3.834 13 N -0.688 5.688 14 C 0.605 3.395 15 O -0.540 6.540 16 C 0.040 3.960 17 C -0.234 4.234 18 C 0.241 3.759 19 N -0.410 5.410 20 N -0.239 5.239 21 C 0.084 3.916 22 C 0.042 3.958 23 O -0.287 6.287 24 C -0.103 4.103 25 C -0.109 4.109 26 C -0.119 4.119 27 C 0.151 3.849 28 H 0.040 0.960 29 H 0.252 0.748 30 H -0.003 1.003 31 H 0.019 0.981 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.408 0.592 35 H 0.168 0.832 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.174 0.826 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.131 -20.131 4.177 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.276 4.276 3 Si 0.939 3.061 4 H -0.222 1.222 5 H -0.199 1.199 6 H -0.208 1.208 7 C -0.463 4.463 8 H 0.082 0.918 9 N -0.335 5.335 10 C 0.028 3.972 11 C -0.158 4.158 12 C 0.079 3.921 13 N -0.337 5.337 14 C 0.389 3.611 15 O -0.415 6.415 16 C -0.125 4.125 17 C -0.264 4.264 18 C 0.071 3.929 19 N -0.209 5.209 20 N -0.070 5.070 21 C -0.034 4.034 22 C -0.033 4.033 23 O -0.193 6.193 24 C -0.142 4.142 25 C -0.147 4.147 26 C -0.159 4.159 27 C 0.045 3.955 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.015 0.985 31 H 0.038 0.962 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.244 0.756 35 H 0.186 0.814 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.127 0.873 39 H 0.191 0.809 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.908 -18.152 4.420 20.287 hybrid contribution -0.601 -1.432 0.141 1.559 sum -8.509 -19.584 4.561 21.835 Atomic orbital electron populations 1.70900 1.07780 1.29181 1.50915 1.27115 0.96453 1.04598 0.99473 0.82859 0.73823 0.72069 0.77327 1.22179 1.19862 1.20790 1.19943 0.99349 0.89258 1.37773 0.91837 1.44773 1.39793 1.01196 1.47692 1.21387 0.90055 0.95376 0.90359 1.23060 1.01857 0.94048 0.96877 1.21860 0.85780 0.92489 0.91965 1.45721 1.27790 1.46444 1.13781 1.16909 0.80200 0.78302 0.85734 1.90769 1.73694 1.62148 1.14904 1.21797 0.98167 1.00821 0.91755 1.20131 0.98280 1.07968 1.00046 1.20733 0.90248 0.91875 0.90018 1.51101 1.21782 1.37009 1.10969 1.77616 0.99762 1.15384 1.14276 1.23855 0.86557 1.04349 0.88650 1.24943 0.94037 1.03603 0.80722 1.87153 1.35693 1.51529 1.44969 1.22498 0.93994 0.97282 1.00417 1.22299 0.96193 0.94991 1.01207 1.22712 0.95918 0.96688 1.00570 1.22057 0.93976 0.83950 0.95539 0.94189 0.93816 0.98539 0.96227 0.89556 0.91197 0.75606 0.81427 0.85365 0.85082 0.87346 0.80878 0.90432 0.91587 0.89442 0.90551 0.92282 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.47 12.99 21.65 0.28 -59.19 16 2 C -0.08 -4.68 5.08 84.86 0.43 -4.25 16 3 Si 1.11 51.99 30.00 68.60 2.06 54.05 16 4 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.33 -18.89 9.71 84.03 0.82 -18.08 16 8 H 0.06 3.53 7.97 -2.91 -0.02 3.50 16 9 N -0.61 -31.08 2.91 -663.19 -1.93 -33.01 16 10 C 0.15 7.73 5.36 86.94 0.47 8.19 16 11 C -0.12 -4.84 5.83 31.97 0.19 -4.66 16 12 C 0.17 6.05 0.77 5.76 0.00 6.05 16 13 N -0.69 -24.21 5.27 -416.18 -2.19 -26.40 16 14 C 0.60 21.21 7.04 86.75 0.61 21.82 16 15 O -0.54 -20.61 14.84 -3.93 -0.06 -20.67 16 16 C 0.04 1.28 7.09 42.31 0.30 1.58 16 17 C -0.23 -6.63 10.60 22.45 0.24 -6.39 16 18 C 0.24 5.68 8.32 83.60 0.70 6.38 16 19 N -0.41 -9.40 5.01 -453.34 -2.27 -11.67 16 20 N -0.24 -7.24 12.39 -48.51 -0.60 -7.84 16 21 C 0.08 0.81 8.10 86.76 0.70 1.51 16 22 C 0.04 0.24 8.08 72.54 0.59 0.83 16 23 O -0.29 -4.86 11.19 -94.92 -1.06 -5.92 16 24 C -0.10 -3.15 5.34 31.78 0.17 -2.98 16 25 C -0.11 -2.95 6.84 31.61 0.22 -2.74 16 26 C -0.12 -4.18 6.22 31.80 0.20 -3.98 16 27 C 0.15 6.22 3.61 46.24 0.17 6.38 16 28 H 0.04 1.71 7.97 -2.39 -0.02 1.69 16 29 H 0.25 16.26 6.19 -92.71 -0.57 15.68 16 30 H 0.00 -0.17 6.83 -2.39 -0.02 -0.19 16 31 H 0.02 1.07 8.04 -2.39 -0.02 1.05 16 32 H 0.09 3.31 7.60 -2.38 -0.02 3.29 16 33 H 0.07 2.87 6.84 -2.39 -0.02 2.85 16 34 H 0.41 14.25 8.18 -92.71 -0.76 13.49 16 35 H 0.17 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.17 -0.47 8.14 -2.38 -0.02 -0.49 16 40 H 0.08 2.33 7.40 -2.39 -0.02 2.32 16 41 H 0.07 1.99 7.48 -2.39 -0.02 1.97 16 42 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.06 2.26 8.09 -2.39 -0.02 2.24 16 45 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -78.04 361.54 0.47 -77.57 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.46 Total: 23.41 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 5.79 Total: 9.68 kcal Atomic # 7 Polarization: -131.40 SS G_CDS: -6.71 Total: -138.11 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -1.12 Total: -26.59 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 2.06 Total: 54.05 kcal Total: -78.04 0.47 -77.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991063260.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.400 kcal (2) G-P(sol) polarization free energy of solvation -78.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds