Wall clock time and date at job start Tue Mar 31 2020 16:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00137 * 2 1 4 4 H 1.48495 * 109.46984 * 239.99671 * 3 2 1 5 5 H 1.48500 * 109.46904 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47058 * 119.99430 * 3 2 1 7 7 C 1.38810 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00327 * 164.52980 * 7 2 1 9 9 N 1.36939 * 120.00352 * 344.52484 * 7 2 1 10 10 C 1.47010 * 121.37262 * 335.97266 * 9 7 2 11 11 C 1.50319 * 109.16396 * 222.96294 * 10 9 7 12 12 C 1.29457 * 123.65117 * 349.28755 * 11 10 9 13 13 C 1.50694 * 117.69284 * 180.57773 * 12 11 10 14 14 N 1.46502 * 109.47861 * 94.99351 * 13 12 11 15 15 C 1.34772 * 120.00569 * 179.97438 * 14 13 12 16 16 O 1.21573 * 119.99697 * 0.02562 * 15 14 13 17 17 C 1.47718 * 119.99999 * 179.97438 * 15 14 13 18 18 C 1.41301 * 125.94890 * 180.02562 * 17 15 14 19 19 C 1.34853 * 107.70139 * 179.97438 * 18 17 15 20 20 N 1.36393 * 107.92762 * 0.11688 * 19 18 17 21 21 N 1.32115 * 125.95399 * 359.69304 * 17 15 14 22 22 C 1.46725 * 123.61981 * 179.77313 * 20 19 18 23 23 C 1.53525 * 107.96314 * 343.02470 * 22 20 19 24 24 C 1.53226 * 109.30092 * 47.29272 * 23 22 20 25 25 O 1.36037 * 128.63204 * 180.15975 * 19 18 17 26 26 C 1.49964 * 124.61613 * 0.32872 * 12 11 10 27 27 C 1.47338 * 121.37669 * 155.98495 * 9 7 2 28 28 H 0.97002 * 119.99820 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.52256 * 103.05651 * 10 9 7 30 30 H 1.08999 * 109.52111 * 342.87265 * 10 9 7 31 31 H 1.08003 * 118.17335 * 168.99584 * 11 10 9 32 32 H 1.09006 * 109.47402 * 214.99724 * 13 12 11 33 33 H 1.09004 * 109.47463 * 334.99170 * 13 12 11 34 34 H 0.96998 * 119.99289 * 0.02562 * 14 13 12 35 35 H 1.08001 * 126.14776 * 359.94577 * 18 17 15 36 36 H 1.09011 * 109.76102 * 223.40767 * 22 20 19 37 37 H 1.09004 * 109.81056 * 102.67139 * 22 20 19 38 38 H 1.09004 * 109.49636 * 287.34508 * 23 22 20 39 39 H 1.08998 * 109.50093 * 167.24059 * 23 22 20 40 40 H 1.09001 * 109.50420 * 175.46814 * 24 23 22 41 41 H 1.08997 * 109.50522 * 55.34365 * 24 23 22 42 42 H 1.08995 * 109.43781 * 221.06658 * 26 12 11 43 43 H 1.09004 * 109.12988 * 101.67266 * 26 12 11 44 44 H 1.09002 * 109.78070 * 237.79078 * 27 9 7 45 45 H 1.09002 * 109.77840 * 358.60673 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0609 -1.2193 -0.2489 9 7 1.3628 -2.3665 0.3175 10 6 0.1442 -2.3652 1.1398 11 6 0.2243 -3.4823 2.1424 12 6 1.1230 -4.4135 2.1086 13 6 1.0698 -5.4771 3.1748 14 7 0.3296 -6.6368 2.6714 15 6 0.1545 -7.7176 3.4574 16 8 0.6104 -7.7298 4.5844 17 6 -0.5924 -8.8866 2.9500 18 6 -0.8500 -10.0794 3.6624 19 6 -1.5577 -10.8948 2.8544 20 7 -1.7449 -10.2503 1.6671 21 7 -1.1411 -8.9967 1.7532 22 6 -2.4720 -10.8316 0.5329 23 6 -2.5730 -12.3463 0.7616 24 6 -3.0342 -12.6120 2.1984 25 8 -2.0314 -12.1438 3.1122 26 6 2.2100 -4.5114 1.0801 27 6 1.8589 -3.6722 -0.1514 28 1 -0.4850 0.8401 -0.0004 29 1 -0.7267 -2.5110 0.5007 30 1 0.0583 -1.4124 1.6622 31 1 -0.5059 -3.5069 2.9378 32 1 2.0837 -5.7793 3.4375 33 1 0.5684 -5.0815 4.0581 34 1 -0.0338 -6.6271 1.7722 35 1 -0.5360 -10.2988 4.6722 36 1 -1.9306 -10.6337 -0.3923 37 1 -3.4713 -10.4001 0.4745 38 1 -1.5968 -12.8042 0.6022 39 1 -3.2936 -12.7724 0.0635 40 1 -3.1846 -13.6822 2.3403 41 1 -3.9700 -12.0847 2.3836 42 1 2.3355 -5.5525 0.7830 43 1 3.1429 -4.1472 1.5106 44 1 1.0845 -4.1744 -0.7314 45 1 2.7475 -3.5299 -0.7663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000940529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:15 Heat of formation + Delta-G solvation = 53.004487 kcal Electronic energy + Delta-G solvation = -27631.289332 eV Core-core repulsion = 23652.164186 eV Total energy + Delta-G solvation = -3979.125146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.12128 -39.70913 -38.62157 -37.65433 -35.14659 -34.91603 -32.91567 -31.47615 -30.73516 -29.78378 -29.66935 -27.48683 -26.51695 -24.65318 -23.80997 -22.82713 -22.47605 -21.03805 -20.44198 -20.05966 -18.70538 -17.62347 -17.13095 -16.67199 -16.11358 -16.07874 -15.58306 -15.42976 -15.29016 -15.08440 -14.90997 -14.48271 -14.14402 -13.83191 -13.64917 -13.57214 -13.29692 -13.05393 -12.81500 -12.28282 -12.15540 -11.99364 -11.87833 -11.73783 -11.54297 -11.33017 -11.10369 -10.89192 -10.72064 -10.41881 -10.32658 -10.16451 -9.81580 -9.57968 -9.49717 -8.92843 -8.75479 -8.66758 -8.03850 -6.73565 -5.78795 -3.17524 1.14311 1.76159 1.92382 2.46231 2.70624 3.35822 3.40000 3.45550 3.47103 3.49225 3.65079 3.83264 4.18006 4.23865 4.50423 4.51731 4.62086 4.76991 4.88025 5.08156 5.10306 5.15482 5.25333 5.37798 5.42071 5.58070 5.60722 5.66162 5.85566 5.96421 6.09688 6.13963 6.20487 6.37272 6.46311 6.54916 6.75521 6.85695 6.89535 7.06604 7.19312 7.27864 7.35295 7.63957 7.74189 7.83910 8.20531 8.39111 9.20447 9.83246 10.41457 11.31677 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024834 B = 0.002110 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.203827 B =13264.372624 C =13850.530849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.002 4.002 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.194 3.806 11 C -0.123 4.123 12 C -0.166 4.166 13 C 0.156 3.844 14 N -0.704 5.704 15 C 0.597 3.403 16 O -0.530 6.530 17 C 0.055 3.945 18 C -0.227 4.227 19 C 0.261 3.739 20 N -0.393 5.393 21 N -0.241 5.241 22 C 0.127 3.873 23 C -0.175 4.175 24 C 0.049 3.951 25 O -0.286 6.286 26 C -0.090 4.090 27 C 0.144 3.856 28 H 0.254 0.746 29 H 0.041 0.959 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.409 0.591 35 H 0.166 0.834 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.121 0.879 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.023 0.977 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.676 -26.480 1.964 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.375 4.375 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.069 3.931 11 C -0.144 4.144 12 C -0.167 4.167 13 C 0.034 3.966 14 N -0.354 5.354 15 C 0.379 3.621 16 O -0.405 6.405 17 C -0.113 4.113 18 C -0.256 4.256 19 C 0.095 3.905 20 N -0.191 5.191 21 N -0.071 5.071 22 C 0.006 3.994 23 C -0.214 4.214 24 C -0.027 4.027 25 O -0.193 6.193 26 C -0.129 4.129 27 C 0.017 3.983 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.244 0.756 35 H 0.183 0.817 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.041 0.959 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.649 -25.985 1.782 27.146 hybrid contribution 0.073 0.342 0.080 0.359 sum -7.577 -25.643 1.862 26.803 Atomic orbital electron populations 1.69999 1.05167 1.25616 1.54763 1.24990 0.95405 0.98300 1.01258 0.86317 0.78813 0.83247 0.78097 1.20951 1.21652 1.21050 1.19142 0.92204 0.84371 1.41780 0.91403 1.44123 1.29213 1.01200 1.57311 1.19763 0.88799 0.94767 0.89766 1.23296 0.95680 0.96696 0.98706 1.20471 1.00057 0.97212 0.98954 1.20546 0.96271 0.84022 0.95730 1.46083 1.55667 1.15502 1.18198 1.16888 0.79317 0.80958 0.84893 1.90804 1.49863 1.81178 1.18624 1.22036 1.00704 0.96170 0.92361 1.20204 1.10794 0.92362 1.02285 1.19430 0.98597 0.85553 0.86903 1.49306 1.45584 1.12627 1.11592 1.77624 1.13892 0.96794 1.18774 1.21998 0.97227 0.92163 0.87992 1.22651 1.05223 0.94990 0.98506 1.23135 0.89949 1.01959 0.87641 1.86666 1.55363 1.25436 1.51857 1.20757 0.96659 0.99084 0.96449 1.20953 0.97349 0.87139 0.92813 0.93562 0.94102 0.88859 0.88697 0.91178 0.91253 0.75606 0.81652 0.87601 0.88945 0.89140 0.86976 0.86135 0.90799 0.92787 0.91717 0.95901 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.19 11.08 55.49 0.61 -25.58 16 2 C 0.00 -0.05 5.01 -17.43 -0.09 -0.13 16 3 Si 0.91 21.75 29.58 -169.99 -5.03 16.73 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.25 -6.73 9.71 -15.06 -0.15 -6.87 16 8 H 0.07 1.82 7.88 -52.48 -0.41 1.40 16 9 N -0.60 -14.89 3.01 -173.67 -0.52 -15.41 16 10 C 0.19 4.60 5.23 -5.10 -0.03 4.57 16 11 C -0.12 -2.37 9.47 -35.78 -0.34 -2.71 16 12 C -0.17 -2.91 5.23 -101.00 -0.53 -3.44 16 13 C 0.16 2.43 5.66 -5.20 -0.03 2.40 16 14 N -0.70 -10.31 5.55 -62.47 -0.35 -10.65 16 15 C 0.60 9.26 7.83 -12.39 -0.10 9.16 16 16 O -0.53 -9.57 16.90 5.30 0.09 -9.48 16 17 C 0.05 0.77 7.10 -82.71 -0.59 0.18 16 18 C -0.23 -2.91 10.58 -39.62 -0.42 -3.33 16 19 C 0.26 2.89 7.57 -16.72 -0.13 2.76 16 20 N -0.39 -4.10 4.08 -60.93 -0.25 -4.35 16 21 N -0.24 -3.15 12.32 33.43 0.41 -2.74 16 22 C 0.13 0.72 7.41 -3.65 -0.03 0.69 16 23 C -0.18 -0.54 6.16 -26.34 -0.16 -0.70 16 24 C 0.05 0.20 7.00 37.27 0.26 0.47 16 25 O -0.29 -2.55 10.65 -19.86 -0.21 -2.76 16 26 C -0.09 -1.60 5.94 -28.18 -0.17 -1.76 16 27 C 0.14 2.99 6.58 -3.53 -0.02 2.96 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.09 2.46 6.41 -51.93 -0.33 2.13 16 31 H 0.10 1.65 7.73 -52.48 -0.41 1.24 16 32 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 33 H 0.07 1.09 7.78 -51.93 -0.40 0.68 16 34 H 0.41 5.70 8.16 -40.82 -0.33 5.37 16 35 H 0.17 1.99 8.06 -52.49 -0.42 1.57 16 36 H 0.11 0.52 8.14 -51.92 -0.42 0.09 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.11 0.01 8.14 -51.93 -0.42 -0.41 16 40 H 0.12 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -33.47 372.78 -8.64 -42.11 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.51 Total: 2.27 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -2.51 Total: 4.25 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.09 Total: -58.74 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.12 Total: -12.24 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.47 -8.64 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000940529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.114 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds