Wall clock time and date at job start Tue Mar 31 2020 16:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00137 * 2 1 4 4 H 1.48495 * 109.46984 * 239.99671 * 3 2 1 5 5 H 1.48500 * 109.46904 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47058 * 119.99430 * 3 2 1 7 7 C 1.38810 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00327 * 164.52980 * 7 2 1 9 9 N 1.36939 * 120.00352 * 344.52484 * 7 2 1 10 10 C 1.47010 * 121.37262 * 335.97266 * 9 7 2 11 11 C 1.50319 * 109.16396 * 222.96294 * 10 9 7 12 12 C 1.29457 * 123.65117 * 349.28755 * 11 10 9 13 13 C 1.50694 * 117.69284 * 180.57773 * 12 11 10 14 14 N 1.46502 * 109.47861 * 94.99351 * 13 12 11 15 15 C 1.34772 * 120.00569 * 179.97438 * 14 13 12 16 16 O 1.21573 * 119.99697 * 0.02562 * 15 14 13 17 17 C 1.47718 * 119.99999 * 179.97438 * 15 14 13 18 18 C 1.41301 * 125.94890 * 180.02562 * 17 15 14 19 19 C 1.34853 * 107.70139 * 179.97438 * 18 17 15 20 20 N 1.36393 * 107.92762 * 0.11688 * 19 18 17 21 21 N 1.32115 * 125.95399 * 359.69304 * 17 15 14 22 22 C 1.46725 * 123.61981 * 179.77313 * 20 19 18 23 23 C 1.53525 * 107.96314 * 343.02470 * 22 20 19 24 24 C 1.53226 * 109.30092 * 47.29272 * 23 22 20 25 25 O 1.36037 * 128.63204 * 180.15975 * 19 18 17 26 26 C 1.49964 * 124.61613 * 0.32872 * 12 11 10 27 27 C 1.47338 * 121.37669 * 155.98495 * 9 7 2 28 28 H 0.97002 * 119.99820 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.52256 * 103.05651 * 10 9 7 30 30 H 1.08999 * 109.52111 * 342.87265 * 10 9 7 31 31 H 1.08003 * 118.17335 * 168.99584 * 11 10 9 32 32 H 1.09006 * 109.47402 * 214.99724 * 13 12 11 33 33 H 1.09004 * 109.47463 * 334.99170 * 13 12 11 34 34 H 0.96998 * 119.99289 * 0.02562 * 14 13 12 35 35 H 1.08001 * 126.14776 * 359.94577 * 18 17 15 36 36 H 1.09011 * 109.76102 * 223.40767 * 22 20 19 37 37 H 1.09004 * 109.81056 * 102.67139 * 22 20 19 38 38 H 1.09004 * 109.49636 * 287.34508 * 23 22 20 39 39 H 1.08998 * 109.50093 * 167.24059 * 23 22 20 40 40 H 1.09001 * 109.50420 * 175.46814 * 24 23 22 41 41 H 1.08997 * 109.50522 * 55.34365 * 24 23 22 42 42 H 1.08995 * 109.43781 * 221.06658 * 26 12 11 43 43 H 1.09004 * 109.12988 * 101.67266 * 26 12 11 44 44 H 1.09002 * 109.78070 * 237.79078 * 27 9 7 45 45 H 1.09002 * 109.77840 * 358.60673 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0609 -1.2193 -0.2489 9 7 1.3628 -2.3665 0.3175 10 6 0.1442 -2.3652 1.1398 11 6 0.2243 -3.4823 2.1424 12 6 1.1230 -4.4135 2.1086 13 6 1.0698 -5.4771 3.1748 14 7 0.3296 -6.6368 2.6714 15 6 0.1545 -7.7176 3.4574 16 8 0.6104 -7.7298 4.5844 17 6 -0.5924 -8.8866 2.9500 18 6 -0.8500 -10.0794 3.6624 19 6 -1.5577 -10.8948 2.8544 20 7 -1.7449 -10.2503 1.6671 21 7 -1.1411 -8.9967 1.7532 22 6 -2.4720 -10.8316 0.5329 23 6 -2.5730 -12.3463 0.7616 24 6 -3.0342 -12.6120 2.1984 25 8 -2.0314 -12.1438 3.1122 26 6 2.2100 -4.5114 1.0801 27 6 1.8589 -3.6722 -0.1514 28 1 -0.4850 0.8401 -0.0004 29 1 -0.7267 -2.5110 0.5007 30 1 0.0583 -1.4124 1.6622 31 1 -0.5059 -3.5069 2.9378 32 1 2.0837 -5.7793 3.4375 33 1 0.5684 -5.0815 4.0581 34 1 -0.0338 -6.6271 1.7722 35 1 -0.5360 -10.2988 4.6722 36 1 -1.9306 -10.6337 -0.3923 37 1 -3.4713 -10.4001 0.4745 38 1 -1.5968 -12.8042 0.6022 39 1 -3.2936 -12.7724 0.0635 40 1 -3.1846 -13.6822 2.3403 41 1 -3.9700 -12.0847 2.3836 42 1 2.3355 -5.5525 0.7830 43 1 3.1429 -4.1472 1.5106 44 1 1.0845 -4.1744 -0.7314 45 1 2.7475 -3.5299 -0.7663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000940529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:14 Heat of formation + Delta-G solvation = 29.224590 kcal Electronic energy + Delta-G solvation = -27632.320506 eV Core-core repulsion = 23652.164186 eV Total energy + Delta-G solvation = -3980.156320 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.91984 -40.82584 -39.55259 -39.13282 -36.45916 -35.67246 -34.58403 -32.78773 -31.93528 -31.39916 -30.59442 -28.81233 -27.42987 -26.09027 -24.81955 -24.34387 -23.57192 -22.69700 -21.36150 -20.78778 -19.64403 -19.38334 -17.97823 -17.62922 -17.22798 -17.14177 -16.95177 -16.65133 -16.39652 -16.04478 -15.79982 -15.70371 -15.37995 -15.23782 -15.10912 -14.86379 -14.45874 -14.30438 -13.94554 -13.66784 -13.37072 -13.26835 -12.93536 -12.77105 -12.64025 -12.57910 -12.43355 -12.25470 -12.13049 -12.11260 -11.88057 -11.70595 -11.48986 -11.23524 -10.67425 -10.38756 -10.09668 -9.66446 -9.60735 -8.74685 -7.87489 -5.28876 0.16440 1.00599 1.02193 1.17525 1.47813 1.50686 1.57024 1.90016 2.23344 2.41042 2.52110 3.03509 3.29419 3.51677 3.56752 3.62290 3.84627 3.95689 3.97362 3.98815 4.18391 4.29742 4.43370 4.44533 4.53413 4.53685 4.58273 4.65486 4.70082 4.74845 4.84797 4.91894 4.92030 5.06130 5.10150 5.20194 5.22821 5.29438 5.40391 5.48430 5.61937 5.76555 6.12344 6.16382 6.16594 6.34572 6.49203 7.01785 7.14053 7.83930 8.38189 9.21055 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024834 B = 0.002110 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.203827 B =13264.372624 C =13850.530849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.055 4.055 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.257 4.257 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.205 3.795 11 C -0.141 4.141 12 C -0.140 4.140 13 C 0.165 3.835 14 N -0.697 5.697 15 C 0.600 3.400 16 O -0.560 6.560 17 C 0.037 3.963 18 C -0.253 4.253 19 C 0.271 3.729 20 N -0.385 5.385 21 N -0.255 5.255 22 C 0.110 3.890 23 C -0.164 4.164 24 C 0.035 3.965 25 O -0.298 6.298 26 C -0.085 4.085 27 C 0.139 3.861 28 H 0.250 0.750 29 H 0.014 0.986 30 H 0.059 0.941 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.413 0.587 35 H 0.163 0.837 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.026 0.974 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.771 -29.001 1.366 30.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.250 4.250 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.387 4.387 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.080 3.920 11 C -0.161 4.161 12 C -0.141 4.141 13 C 0.043 3.957 14 N -0.347 5.347 15 C 0.384 3.616 16 O -0.437 6.437 17 C -0.129 4.129 18 C -0.283 4.283 19 C 0.104 3.896 20 N -0.184 5.184 21 N -0.087 5.087 22 C -0.009 4.009 23 C -0.202 4.202 24 C -0.039 4.039 25 O -0.205 6.205 26 C -0.123 4.123 27 C 0.014 3.986 28 H 0.059 0.941 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.132 0.868 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.250 0.750 35 H 0.181 0.819 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.169 0.831 40 H 0.168 0.832 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.044 0.956 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.744 -28.547 1.154 29.601 hybrid contribution 0.035 0.932 0.162 0.947 sum -7.709 -27.615 1.315 28.701 Atomic orbital electron populations 1.70163 1.06501 1.25859 1.56113 1.25756 0.96196 1.01378 1.01665 0.85310 0.77487 0.79208 0.78271 1.20045 1.22076 1.20628 1.19485 0.92564 0.85587 1.41069 0.91145 1.44407 1.29394 1.02147 1.57955 1.19407 0.87713 0.94937 0.89937 1.22986 0.97904 0.96224 0.98983 1.20588 0.98455 0.96546 0.98516 1.20389 0.96915 0.83603 0.94804 1.45931 1.55416 1.15053 1.18328 1.17042 0.78847 0.81285 0.84396 1.90780 1.51241 1.81846 1.19866 1.21768 1.01869 0.96092 0.93187 1.20288 1.12278 0.92881 1.02809 1.19362 0.97502 0.86076 0.86665 1.49689 1.44616 1.11584 1.12493 1.77523 1.14337 0.98464 1.18336 1.22550 0.97586 0.93871 0.86847 1.22680 1.06087 0.92897 0.98549 1.23605 0.89043 1.03651 0.87565 1.86682 1.56375 1.23987 1.53458 1.20697 0.96478 1.00209 0.94935 1.21133 0.97365 0.85778 0.94353 0.94115 0.96856 0.92328 0.86845 0.90418 0.91139 0.75030 0.81927 0.86722 0.87289 0.89647 0.83099 0.83198 0.89939 0.89627 0.91521 0.95640 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.79 11.08 21.65 0.24 -55.55 16 2 C -0.06 -3.11 5.01 84.86 0.43 -2.68 16 3 Si 0.97 45.31 29.58 68.60 2.03 47.34 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 7 C -0.26 -14.24 9.71 84.03 0.82 -13.42 16 8 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 9 N -0.61 -31.16 3.01 -703.36 -2.12 -33.28 16 10 C 0.21 10.05 5.23 85.42 0.45 10.50 16 11 C -0.14 -5.39 9.47 27.10 0.26 -5.14 16 12 C -0.14 -4.72 5.23 -15.14 -0.08 -4.80 16 13 C 0.17 4.87 5.66 85.63 0.48 5.35 16 14 N -0.70 -19.60 5.55 -469.82 -2.61 -22.20 16 15 C 0.60 18.42 7.83 86.75 0.68 19.10 16 16 O -0.56 -20.23 16.90 -3.95 -0.07 -20.30 16 17 C 0.04 1.03 7.10 42.36 0.30 1.33 16 18 C -0.25 -6.50 10.58 22.25 0.24 -6.27 16 19 C 0.27 5.71 7.57 83.21 0.63 6.34 16 20 N -0.39 -7.41 4.08 -457.15 -1.87 -9.28 16 21 N -0.26 -6.45 12.32 -48.15 -0.59 -7.05 16 22 C 0.11 0.94 7.41 86.51 0.64 1.58 16 23 C -0.16 -0.41 6.16 30.85 0.19 -0.22 16 24 C 0.04 0.18 7.00 72.06 0.50 0.69 16 25 O -0.30 -4.76 10.65 -93.97 -1.00 -5.76 16 26 C -0.08 -2.82 5.94 29.65 0.18 -2.64 16 27 C 0.14 5.66 6.58 86.25 0.57 6.23 16 28 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.01 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.06 3.24 6.41 -2.39 -0.02 3.23 16 31 H 0.11 3.90 7.73 -2.91 -0.02 3.88 16 32 H 0.08 2.24 8.11 -2.38 -0.02 2.22 16 33 H 0.07 2.11 7.78 -2.39 -0.02 2.09 16 34 H 0.41 10.99 8.16 -92.71 -0.76 10.23 16 35 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 36 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 39 H 0.15 -0.73 8.14 -2.39 -0.02 -0.75 16 40 H 0.15 -0.08 8.14 -2.39 -0.02 -0.10 16 41 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 44 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16 Total: -1.00 -74.62 372.78 0.55 -74.07 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.26 Total: 16.06 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 6.27 Total: 15.95 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -6.94 Total: -127.36 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -1.07 Total: -26.06 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -74.62 0.55 -74.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000940529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.296 kcal (2) G-P(sol) polarization free energy of solvation -74.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds