Wall clock time and date at job start Tue Mar 31 2020 16:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00286 * 2 1 4 4 H 1.48495 * 109.47250 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47165 * 120.00120 * 3 2 1 6 6 H 1.48504 * 109.47405 * 240.00305 * 3 2 1 7 7 C 1.38811 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00032 * 162.28873 * 7 2 1 9 9 N 1.36943 * 120.00018 * 342.28973 * 7 2 1 10 10 C 1.46844 * 120.37796 * 330.95783 * 9 7 2 11 11 C 1.52871 * 109.07030 * 236.85328 * 10 9 7 12 12 C 1.53177 * 108.82625 * 308.91367 * 11 10 9 13 13 C 1.52856 * 117.65644 * 269.85036 * 12 11 10 14 14 C 1.52822 * 117.71182 * 200.99276 * 12 11 10 15 15 H 1.08997 * 117.50314 * 0.13665 * 14 12 11 16 16 N 1.46499 * 117.49888 * 215.09413 * 14 12 11 17 17 C 1.34781 * 119.99611 * 154.99881 * 16 14 12 18 18 O 1.21570 * 120.00163 * 0.02562 * 17 16 14 19 19 C 1.47722 * 119.99865 * 180.02562 * 17 16 14 20 20 C 1.40939 * 125.97419 * 179.71862 * 19 17 16 21 21 C 1.36179 * 107.95383 * 179.97438 * 20 19 17 22 22 N 1.35800 * 107.30975 * 0.04488 * 21 20 19 23 23 N 1.31848 * 125.97338 * 0.02562 * 19 17 16 24 24 C 1.47423 * 108.06920 * 180.45106 * 22 21 20 25 25 C 1.54652 * 102.35162 * 15.28248 * 24 22 21 26 26 O 1.36121 * 140.87676 * 179.28234 * 21 20 19 27 27 C 1.53178 * 115.07906 * 55.31819 * 12 11 10 28 28 C 1.46839 * 120.37901 * 151.22549 * 9 7 2 29 29 H 0.97000 * 119.99597 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.57737 * 356.68311 * 10 9 7 31 31 H 1.08990 * 109.58155 * 117.08998 * 10 9 7 32 32 H 1.09009 * 109.66214 * 189.04410 * 11 10 9 33 33 H 1.09001 * 109.45030 * 68.65491 * 11 10 9 34 34 H 1.09003 * 117.50266 * 359.76122 * 13 12 11 35 35 H 1.08991 * 117.50321 * 144.78196 * 13 12 11 36 36 H 0.97000 * 120.00527 * 335.00613 * 16 14 12 37 37 H 1.07997 * 126.02708 * 0.07126 * 20 19 17 38 38 H 1.08996 * 110.83221 * 133.49716 * 24 22 21 39 39 H 1.09001 * 110.83477 * 257.06884 * 24 22 21 40 40 H 1.09005 * 110.84948 * 93.34256 * 25 24 22 41 41 H 1.08995 * 110.85272 * 216.97254 * 25 24 22 42 42 H 1.09003 * 109.59144 * 184.76231 * 27 12 11 43 43 H 1.09007 * 109.58622 * 64.33177 * 27 12 11 44 44 H 1.08997 * 109.58229 * 242.90148 * 28 9 7 45 45 H 1.08995 * 109.58407 * 3.31272 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0518 -1.2242 -0.2851 9 7 1.3742 -2.3602 0.3597 10 6 0.2549 -2.3280 1.3097 11 6 0.5769 -3.2417 2.4922 12 6 1.0002 -4.6129 1.9565 13 6 -0.0929 -5.6603 1.7452 14 6 0.8971 -5.8084 2.9029 15 1 0.5249 -5.6222 3.9103 16 7 1.9196 -6.8512 2.7892 17 6 2.2041 -7.6344 3.8486 18 8 1.6117 -7.4756 4.8983 19 6 3.2356 -8.6856 3.7343 20 6 3.6357 -9.5677 4.7580 21 6 4.6053 -10.3814 4.2558 22 7 4.8059 -10.0202 2.9622 23 7 3.9469 -8.9589 2.6583 24 6 5.8464 -10.8991 2.3981 25 6 5.9085 -12.0455 3.4343 26 8 5.4229 -11.4042 4.6279 27 6 2.1648 -4.5901 0.9618 28 6 1.8074 -3.6489 -0.1950 29 1 -0.4849 0.8401 -0.0004 30 1 0.1084 -1.3088 1.6672 31 1 -0.6522 -2.6784 0.8174 32 1 -0.3061 -3.3519 3.1217 33 1 1.3912 -2.8093 3.0737 34 1 -1.1162 -5.3766 1.9911 35 1 0.0166 -6.3383 0.8989 36 1 2.3921 -6.9781 1.9516 37 1 3.2417 -9.5948 5.7632 38 1 5.5469 -11.2763 1.4203 39 1 6.8024 -10.3790 2.3378 40 1 5.2554 -12.8680 3.1425 41 1 6.9333 -12.3915 3.5692 42 1 2.3356 -5.5951 0.5758 43 1 3.0647 -4.2303 1.4609 44 1 0.9993 -4.0836 -0.7831 45 1 2.6823 -3.4988 -0.8275 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016662937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:16 Heat of formation + Delta-G solvation = 86.826814 kcal Electronic energy + Delta-G solvation = -27980.188888 eV Core-core repulsion = 24002.530388 eV Total energy + Delta-G solvation = -3977.658500 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.68631 -40.08144 -38.97232 -38.06558 -35.47075 -33.75781 -33.13302 -31.59719 -30.35181 -29.91788 -29.24444 -28.23614 -25.16175 -24.30690 -23.35537 -22.42596 -21.88781 -21.54255 -20.66627 -20.12032 -18.30756 -18.10916 -17.47714 -16.74029 -16.57850 -16.14449 -15.79476 -15.47198 -15.18391 -14.79506 -14.47348 -14.22808 -14.04707 -13.85209 -13.48759 -13.33485 -13.24050 -13.08362 -12.81731 -12.65224 -12.21248 -11.84116 -11.61672 -11.56411 -11.30087 -11.29479 -10.94920 -10.69650 -10.42543 -10.33273 -10.27941 -9.92451 -9.67188 -9.60809 -9.59800 -9.32521 -8.90225 -8.45254 -8.41697 -6.60823 -5.76028 -3.19044 0.99037 1.41589 1.75730 2.32419 3.05513 3.18772 3.40345 3.41965 3.46277 3.47895 3.99737 4.06133 4.22158 4.35968 4.51698 4.52363 4.68620 4.87751 4.91332 5.00732 5.16530 5.17935 5.20698 5.41995 5.52840 5.53971 5.67153 5.87119 6.01135 6.09441 6.11853 6.12743 6.33322 6.41682 6.48578 6.57226 6.65160 6.68578 6.74860 6.87025 7.00564 7.04089 7.40623 7.49869 7.70560 7.82212 8.08956 8.49695 9.24943 9.88595 10.45227 11.31822 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021613 B = 0.002281 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.233669 B =12272.029244 C =12917.771104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.291 1.291 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.063 0.937 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.106 4.106 12 C -0.094 4.094 13 C -0.180 4.180 14 C 0.066 3.934 15 H 0.136 0.864 16 N -0.678 5.678 17 C 0.605 3.395 18 O -0.523 6.523 19 C 0.058 3.942 20 C -0.212 4.212 21 C 0.233 3.767 22 N -0.412 5.412 23 N -0.217 5.217 24 C 0.097 3.903 25 C 0.042 3.958 26 O -0.278 6.278 27 C -0.099 4.099 28 C 0.151 3.849 29 H 0.254 0.746 30 H 0.090 0.910 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.408 0.592 37 H 0.167 0.833 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.131 0.869 42 H 0.046 0.954 43 H 0.064 0.936 44 H 0.019 0.981 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.892 -25.197 5.462 27.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.217 1.217 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.081 0.919 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.145 4.145 12 C -0.096 4.096 13 C -0.218 4.218 14 C -0.039 4.039 15 H 0.154 0.846 16 N -0.327 5.327 17 C 0.387 3.613 18 O -0.397 6.397 19 C -0.109 4.109 20 C -0.242 4.242 21 C 0.065 3.935 22 N -0.209 5.209 23 N -0.047 5.047 24 C -0.024 4.024 25 C -0.035 4.035 26 O -0.185 6.185 27 C -0.138 4.138 28 C 0.024 3.976 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.244 0.756 37 H 0.184 0.816 38 H 0.132 0.868 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.149 0.851 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.037 0.963 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.713 -24.715 5.082 27.037 hybrid contribution 0.710 0.329 0.138 0.794 sum 10.423 -24.385 5.220 27.028 Atomic orbital electron populations 1.70026 1.05254 1.25594 1.53662 1.25041 0.95254 0.98406 1.00896 0.86391 0.78954 0.83427 0.78121 1.21656 1.21033 1.20933 1.19139 0.92748 0.85045 1.41382 0.91898 1.43954 1.37790 1.01465 1.47949 1.20665 0.88828 0.98695 0.87125 1.21812 0.99777 0.92998 0.99917 1.21975 0.97951 0.91207 0.98441 1.23547 0.96218 1.02533 0.99536 1.21996 0.93097 0.91318 0.97478 0.84642 1.45264 1.39516 1.33599 1.14356 1.16699 0.80786 0.79718 0.84056 1.90813 1.51030 1.69572 1.28252 1.21967 0.98485 0.98629 0.91782 1.20055 1.01147 1.00422 1.02525 1.20758 0.94376 0.91710 0.86650 1.50665 1.31690 1.27578 1.11003 1.77693 1.04389 1.01476 1.21168 1.23284 0.90295 0.88975 0.99806 1.24475 1.03077 0.94867 0.81033 1.87152 1.59204 1.42482 1.29686 1.21645 0.96182 0.98750 0.97243 1.20831 0.97360 0.87003 0.92418 0.93594 0.89183 0.96367 0.92856 0.92060 0.88107 0.88957 0.75575 0.81582 0.86798 0.87498 0.88683 0.85083 0.93531 0.91704 0.96281 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 11.23 55.49 0.62 -25.50 16 2 C 0.00 0.07 4.89 -17.43 -0.09 -0.01 16 3 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.25 -6.95 9.54 -15.06 -0.14 -7.09 16 8 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -14.69 2.94 -172.56 -0.51 -15.20 16 10 C 0.17 4.09 5.37 -3.92 -0.02 4.07 16 11 C -0.11 -2.03 5.81 -26.71 -0.16 -2.18 16 12 C -0.09 -1.59 1.94 -154.49 -0.30 -1.89 16 13 C -0.18 -2.65 9.87 -26.78 -0.26 -2.92 16 14 C 0.07 1.00 6.14 -68.00 -0.42 0.58 16 15 H 0.14 2.14 7.40 -51.93 -0.38 1.76 16 16 N -0.68 -9.56 5.34 -54.86 -0.29 -9.86 16 17 C 0.60 9.07 7.83 -12.38 -0.10 8.97 16 18 O -0.52 -9.16 16.47 5.30 0.09 -9.07 16 19 C 0.06 0.79 7.09 -82.96 -0.59 0.20 16 20 C -0.21 -2.59 10.60 -39.30 -0.42 -3.00 16 21 C 0.23 2.46 8.32 -16.54 -0.14 2.32 16 22 N -0.41 -4.14 5.01 -59.63 -0.30 -4.44 16 23 N -0.22 -2.75 12.39 33.32 0.41 -2.33 16 24 C 0.10 0.43 8.10 -2.67 -0.02 0.40 16 25 C 0.04 0.12 8.08 38.03 0.31 0.43 16 26 O -0.28 -2.26 11.19 -20.13 -0.23 -2.49 16 27 C -0.10 -1.70 5.37 -26.46 -0.14 -1.84 16 28 C 0.15 3.13 6.52 -3.67 -0.02 3.10 16 29 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.09 2.40 5.94 -51.93 -0.31 2.09 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.92 8.10 -51.92 -0.42 0.50 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.41 5.30 6.81 -40.82 -0.28 5.02 16 37 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.13 -0.03 8.14 -51.93 -0.42 -0.45 16 42 H 0.05 0.68 6.75 -51.93 -0.35 0.33 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 1.11 7.92 -51.93 -0.41 0.69 16 LS Contribution 369.53 15.07 5.57 5.57 Total: -1.00 -33.97 369.53 -8.52 -42.49 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.35 Total: 2.95 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -2.51 Total: 1.15 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.06 Total: -57.33 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.14 Total: -11.56 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.97 -8.52 -42.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016662937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.322 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds