Wall clock time and date at job start Tue Mar 31 2020 16:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00286 * 2 1 4 4 H 1.48495 * 109.47250 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47165 * 120.00120 * 3 2 1 6 6 H 1.48504 * 109.47405 * 240.00305 * 3 2 1 7 7 C 1.38811 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00032 * 162.28873 * 7 2 1 9 9 N 1.36943 * 120.00018 * 342.28973 * 7 2 1 10 10 C 1.46844 * 120.37796 * 330.95783 * 9 7 2 11 11 C 1.52871 * 109.07030 * 236.85328 * 10 9 7 12 12 C 1.53177 * 108.82625 * 308.91367 * 11 10 9 13 13 C 1.52856 * 117.65644 * 269.85036 * 12 11 10 14 14 C 1.52822 * 117.71182 * 200.99276 * 12 11 10 15 15 H 1.08997 * 117.50314 * 0.13665 * 14 12 11 16 16 N 1.46499 * 117.49888 * 215.09413 * 14 12 11 17 17 C 1.34781 * 119.99611 * 154.99881 * 16 14 12 18 18 O 1.21570 * 120.00163 * 0.02562 * 17 16 14 19 19 C 1.47722 * 119.99865 * 180.02562 * 17 16 14 20 20 C 1.40939 * 125.97419 * 179.71862 * 19 17 16 21 21 C 1.36179 * 107.95383 * 179.97438 * 20 19 17 22 22 N 1.35800 * 107.30975 * 0.04488 * 21 20 19 23 23 N 1.31848 * 125.97338 * 0.02562 * 19 17 16 24 24 C 1.47423 * 108.06920 * 180.45106 * 22 21 20 25 25 C 1.54652 * 102.35162 * 15.28248 * 24 22 21 26 26 O 1.36121 * 140.87676 * 179.28234 * 21 20 19 27 27 C 1.53178 * 115.07906 * 55.31819 * 12 11 10 28 28 C 1.46839 * 120.37901 * 151.22549 * 9 7 2 29 29 H 0.97000 * 119.99597 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.57737 * 356.68311 * 10 9 7 31 31 H 1.08990 * 109.58155 * 117.08998 * 10 9 7 32 32 H 1.09009 * 109.66214 * 189.04410 * 11 10 9 33 33 H 1.09001 * 109.45030 * 68.65491 * 11 10 9 34 34 H 1.09003 * 117.50266 * 359.76122 * 13 12 11 35 35 H 1.08991 * 117.50321 * 144.78196 * 13 12 11 36 36 H 0.97000 * 120.00527 * 335.00613 * 16 14 12 37 37 H 1.07997 * 126.02708 * 0.07126 * 20 19 17 38 38 H 1.08996 * 110.83221 * 133.49716 * 24 22 21 39 39 H 1.09001 * 110.83477 * 257.06884 * 24 22 21 40 40 H 1.09005 * 110.84948 * 93.34256 * 25 24 22 41 41 H 1.08995 * 110.85272 * 216.97254 * 25 24 22 42 42 H 1.09003 * 109.59144 * 184.76231 * 27 12 11 43 43 H 1.09007 * 109.58622 * 64.33177 * 27 12 11 44 44 H 1.08997 * 109.58229 * 242.90148 * 28 9 7 45 45 H 1.08995 * 109.58407 * 3.31272 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0518 -1.2242 -0.2851 9 7 1.3742 -2.3602 0.3597 10 6 0.2549 -2.3280 1.3097 11 6 0.5769 -3.2417 2.4922 12 6 1.0002 -4.6129 1.9565 13 6 -0.0929 -5.6603 1.7452 14 6 0.8971 -5.8084 2.9029 15 1 0.5249 -5.6222 3.9103 16 7 1.9196 -6.8512 2.7892 17 6 2.2041 -7.6344 3.8486 18 8 1.6117 -7.4756 4.8983 19 6 3.2356 -8.6856 3.7343 20 6 3.6357 -9.5677 4.7580 21 6 4.6053 -10.3814 4.2558 22 7 4.8059 -10.0202 2.9622 23 7 3.9469 -8.9589 2.6583 24 6 5.8464 -10.8991 2.3981 25 6 5.9085 -12.0455 3.4343 26 8 5.4229 -11.4042 4.6279 27 6 2.1648 -4.5901 0.9618 28 6 1.8074 -3.6489 -0.1950 29 1 -0.4849 0.8401 -0.0004 30 1 0.1084 -1.3088 1.6672 31 1 -0.6522 -2.6784 0.8174 32 1 -0.3061 -3.3519 3.1217 33 1 1.3912 -2.8093 3.0737 34 1 -1.1162 -5.3766 1.9911 35 1 0.0166 -6.3383 0.8989 36 1 2.3921 -6.9781 1.9516 37 1 3.2417 -9.5948 5.7632 38 1 5.5469 -11.2763 1.4203 39 1 6.8024 -10.3790 2.3378 40 1 5.2554 -12.8680 3.1425 41 1 6.9333 -12.3915 3.5692 42 1 2.3356 -5.5951 0.5758 43 1 3.0647 -4.2303 1.4609 44 1 0.9993 -4.0836 -0.7831 45 1 2.6823 -3.4988 -0.8275 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016662937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:15 Heat of formation + Delta-G solvation = 62.284833 kcal Electronic energy + Delta-G solvation = -27981.253108 eV Core-core repulsion = 24002.530388 eV Total energy + Delta-G solvation = -3978.722720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.39278 -41.22517 -40.02037 -39.16907 -37.14251 -34.66573 -34.25190 -33.36349 -31.72019 -31.00711 -30.05002 -29.80527 -26.27222 -25.89654 -24.09120 -23.92920 -23.03796 -22.57412 -22.08991 -21.22066 -19.80528 -18.99702 -18.35718 -18.08355 -17.53078 -17.28680 -16.78460 -16.59907 -16.25041 -16.12457 -15.71370 -15.45313 -15.20923 -15.08419 -14.93589 -14.72783 -14.35607 -14.15437 -13.97831 -13.80351 -13.30587 -13.14046 -13.09750 -12.87567 -12.58705 -12.55758 -12.29154 -12.26531 -12.15483 -12.02570 -11.77704 -11.52681 -11.39624 -11.23361 -10.72923 -10.45896 -10.34157 -9.72869 -9.70395 -8.60866 -7.84960 -5.30928 0.07327 0.77109 0.90029 1.46827 1.49685 1.56169 1.61151 2.08634 2.16903 2.52547 2.94609 2.99281 3.29649 3.34160 3.63682 3.75914 3.80052 3.84215 3.86840 3.98077 4.07570 4.13460 4.23513 4.43494 4.46373 4.53217 4.59874 4.63173 4.73919 4.74621 4.85843 4.89073 4.94661 5.03207 5.09627 5.13658 5.18367 5.31947 5.38809 5.41419 5.56091 5.66941 5.74895 5.79827 6.17838 6.42661 6.44040 6.96352 7.17960 7.90313 8.41210 9.20148 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021613 B = 0.002281 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.233669 B =12272.029244 C =12917.771104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.050 4.050 3 Si 0.964 3.036 4 H -0.294 1.294 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.264 4.264 8 H 0.063 0.937 9 N -0.608 5.608 10 C 0.181 3.819 11 C -0.094 4.094 12 C -0.113 4.113 13 C -0.164 4.164 14 C 0.081 3.919 15 H 0.130 0.870 16 N -0.671 5.671 17 C 0.606 3.394 18 O -0.555 6.555 19 C 0.042 3.958 20 C -0.237 4.237 21 C 0.240 3.760 22 N -0.408 5.408 23 N -0.231 5.231 24 C 0.085 3.915 25 C 0.041 3.959 26 O -0.289 6.289 27 C -0.084 4.084 28 C 0.147 3.853 29 H 0.250 0.750 30 H 0.054 0.946 31 H 0.001 0.999 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.415 0.585 37 H 0.165 0.835 38 H 0.137 0.863 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.169 0.831 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.019 0.981 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.827 -27.868 5.037 30.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.245 4.245 3 Si 0.792 3.208 4 H -0.220 1.220 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.394 4.394 8 H 0.081 0.919 9 N -0.332 5.332 10 C 0.055 3.945 11 C -0.133 4.133 12 C -0.115 4.115 13 C -0.202 4.202 14 C -0.024 4.024 15 H 0.148 0.852 16 N -0.320 5.320 17 C 0.391 3.609 18 O -0.431 6.431 19 C -0.124 4.124 20 C -0.267 4.267 21 C 0.071 3.929 22 N -0.206 5.206 23 N -0.063 5.063 24 C -0.033 4.033 25 C -0.034 4.034 26 O -0.196 6.196 27 C -0.124 4.124 28 C 0.021 3.979 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.019 0.981 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.252 0.748 37 H 0.182 0.818 38 H 0.155 0.845 39 H 0.142 0.858 40 H 0.130 0.870 41 H 0.187 0.813 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.037 0.963 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.690 -27.435 4.631 30.179 hybrid contribution 0.224 0.996 0.215 1.043 sum 11.914 -26.439 4.846 29.401 Atomic orbital electron populations 1.70174 1.06588 1.25877 1.55147 1.25772 0.96013 1.01411 1.01326 0.85394 0.77647 0.79468 0.78263 1.21985 1.20691 1.20055 1.19455 0.92983 0.86337 1.40620 0.91910 1.44218 1.37887 1.02327 1.48728 1.20440 0.88142 0.97659 0.88287 1.21568 1.00140 0.93586 0.98020 1.21814 0.99311 0.90586 0.99759 1.23637 0.96014 1.00932 0.99648 1.21794 0.93178 0.90257 0.97200 0.85234 1.45174 1.39247 1.33063 1.14544 1.16903 0.80673 0.79808 0.83538 1.90787 1.52325 1.70603 1.29364 1.21661 0.99018 0.99004 0.92702 1.20132 1.02567 1.01349 1.02654 1.20727 0.93708 0.91772 0.86677 1.51085 1.31495 1.26705 1.11362 1.77558 1.05020 1.02704 1.20985 1.23859 0.89595 0.88632 1.01211 1.24958 1.05507 0.94294 0.78641 1.87164 1.58442 1.41849 1.32172 1.21452 0.95774 0.99360 0.95768 1.20974 0.97148 0.85958 0.93786 0.94102 0.92756 0.98054 0.91002 0.93367 0.87377 0.87334 0.74750 0.81763 0.84468 0.85763 0.86950 0.81315 0.90239 0.92729 0.96261 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.62 11.23 21.65 0.24 -55.38 16 2 C -0.05 -2.81 4.89 84.86 0.41 -2.39 16 3 Si 0.96 45.46 29.59 68.60 2.03 47.49 16 4 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.26 -14.68 9.54 84.03 0.80 -13.88 16 8 H 0.06 3.42 7.89 -2.91 -0.02 3.40 16 9 N -0.61 -30.81 2.94 -699.85 -2.06 -32.87 16 10 C 0.18 8.78 5.37 86.27 0.46 9.24 16 11 C -0.09 -3.62 5.81 30.61 0.18 -3.44 16 12 C -0.11 -3.68 1.94 -52.17 -0.10 -3.78 16 13 C -0.16 -4.49 9.87 30.56 0.30 -4.19 16 14 C 0.08 2.34 6.14 44.95 0.28 2.62 16 15 H 0.13 3.98 7.40 -2.39 -0.02 3.96 16 16 N -0.67 -18.02 5.34 -445.74 -2.38 -20.40 16 17 C 0.61 17.96 7.83 86.75 0.68 18.64 16 18 O -0.55 -19.55 16.47 -3.94 -0.06 -19.62 16 19 C 0.04 1.10 7.09 42.31 0.30 1.40 16 20 C -0.24 -5.75 10.60 22.45 0.24 -5.51 16 21 C 0.24 4.72 8.32 83.60 0.70 5.41 16 22 N -0.41 -7.29 5.01 -453.34 -2.27 -9.56 16 23 N -0.23 -5.52 12.39 -48.51 -0.60 -6.12 16 24 C 0.09 0.44 8.10 86.77 0.70 1.14 16 25 C 0.04 0.08 8.08 72.54 0.59 0.67 16 26 O -0.29 -3.98 11.19 -94.93 -1.06 -5.04 16 27 C -0.08 -2.78 5.37 30.77 0.17 -2.62 16 28 C 0.15 6.03 6.52 86.43 0.56 6.59 16 29 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.05 3.01 5.94 -2.39 -0.01 3.00 16 31 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.07 2.46 8.10 -2.38 -0.02 2.44 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.41 9.94 6.81 -92.71 -0.63 9.31 16 37 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 38 H 0.14 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.11 -0.11 8.14 -2.38 -0.02 -0.13 16 41 H 0.17 -0.91 8.14 -2.39 -0.02 -0.93 16 42 H 0.08 2.10 6.75 -2.39 -0.02 2.08 16 43 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.05 2.16 7.92 -2.39 -0.02 2.14 16 Total: -1.00 -76.07 369.53 0.49 -75.58 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.39 Total: 16.00 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 6.26 Total: 9.91 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -7.07 Total: -124.32 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -1.13 Total: -24.65 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -76.07 0.49 -75.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016662937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.864 kcal (2) G-P(sol) polarization free energy of solvation -76.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds