Wall clock time and date at job start Tue Mar 31 2020 16:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99934 * 2 1 4 4 H 1.48497 * 109.47274 * 270.00355 * 3 2 1 5 5 H 1.48505 * 109.47231 * 30.00370 * 3 2 1 6 6 H 1.48508 * 109.47314 * 150.00213 * 3 2 1 7 7 C 1.38813 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00558 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99772 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99916 * 180.02562 * 9 7 2 11 11 H 1.08994 * 112.85093 * 336.20188 * 10 9 7 12 12 C 1.53960 * 113.73912 * 107.40689 * 10 9 7 13 13 C 1.53782 * 87.01730 * 139.94683 * 12 10 9 14 14 H 1.08996 * 113.61880 * 89.22865 * 13 12 10 15 15 N 1.46509 * 113.60955 * 220.04637 * 13 12 10 16 16 C 1.34771 * 119.99963 * 254.13351 * 15 13 12 17 17 O 1.21557 * 120.00240 * 0.02562 * 16 15 13 18 18 C 1.47904 * 120.00117 * 179.97438 * 16 15 13 19 19 C 1.39430 * 120.02577 * 180.02562 * 18 16 15 20 20 N 1.32050 * 119.95523 * 179.70267 * 19 18 16 21 21 C 1.32607 * 120.01028 * 0.55139 * 20 19 18 22 22 O 1.35487 * 119.97436 * 179.72143 * 21 20 19 23 23 C 1.42895 * 117.00196 * 359.73061 * 22 21 20 24 24 C 1.53003 * 109.47298 * 179.97438 * 23 22 21 25 25 C 1.53001 * 117.51964 * 116.28202 * 24 23 22 26 26 C 1.52999 * 60.00190 * 107.47982 * 25 24 23 27 27 C 1.39589 * 120.05183 * 359.45194 * 21 20 19 28 28 N 1.31558 * 120.04007 * 0.26999 * 27 21 20 29 29 C 1.53778 * 87.17313 * 334.63546 * 13 12 10 30 30 H 0.96994 * 120.00378 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00259 * 0.02562 * 9 7 2 32 32 H 1.08989 * 113.61409 * 25.42303 * 12 10 9 33 33 H 1.09004 * 113.66221 * 254.46958 * 12 10 9 34 34 H 0.97002 * 119.99503 * 74.13469 * 15 13 12 35 35 H 1.07998 * 120.02304 * 0.02562 * 19 18 16 36 36 H 1.08999 * 109.47440 * 59.99451 * 23 22 21 37 37 H 1.09005 * 109.46905 * 299.99611 * 23 22 21 38 38 H 1.09002 * 115.54973 * 330.57985 * 24 23 22 39 39 H 1.09001 * 117.49733 * 214.97413 * 25 24 23 40 40 H 1.08995 * 117.49577 * 359.97438 * 25 24 23 41 41 H 1.09004 * 117.50150 * 252.51496 * 26 25 24 42 42 H 1.09004 * 117.49681 * 107.48417 * 26 25 24 43 43 H 1.08003 * 119.98211 * 180.25429 * 27 21 20 44 44 H 1.08999 * 113.61351 * 139.94587 * 29 13 12 45 45 H 1.09004 * 113.61558 * 270.76306 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 3.0657 -3.5638 -0.4058 12 6 2.0030 -4.4043 1.3443 13 6 1.8499 -5.6981 0.5272 14 1 2.7998 -6.1644 0.2656 15 7 0.8906 -6.6448 1.1015 16 6 1.3308 -7.7572 1.7221 17 8 2.5237 -7.9748 1.8058 18 6 0.3623 -8.7126 2.3025 19 6 0.8172 -9.8633 2.9451 20 7 -0.0485 -10.7125 3.4679 21 6 -1.3499 -10.4762 3.3721 22 8 -2.2376 -11.3508 3.9038 23 6 -1.7016 -12.5084 4.5476 24 6 -2.8468 -13.3709 5.0822 25 6 -3.0153 -14.7702 4.4868 26 6 -2.4761 -14.6039 5.9089 27 6 -1.8057 -9.3244 2.7287 28 7 -0.9449 -8.4743 2.2119 29 6 1.2604 -4.8288 -0.5960 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 1.1262 -4.1602 1.9438 33 1 2.9325 -4.3536 1.9115 34 1 -0.0614 -6.4709 1.0351 35 1 1.8769 -10.0575 3.0199 36 1 -1.0621 -12.2008 5.3750 37 1 -1.1164 -13.0846 3.8309 38 1 -3.7512 -12.8307 5.3619 39 1 -4.0307 -15.1505 4.3748 40 1 -2.3106 -15.0764 3.7138 41 1 -1.4164 -14.8007 6.0717 42 1 -3.1368 -14.8747 6.7326 43 1 -2.8657 -9.1310 2.6549 44 1 1.5910 -5.1203 -1.5929 45 1 0.1798 -4.7021 -0.5287 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022966509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:57 Heat of formation + Delta-G solvation = 36.829018 kcal Electronic energy + Delta-G solvation = -26498.781410 eV Core-core repulsion = 22518.954843 eV Total energy + Delta-G solvation = -3979.826567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.81298 -39.94643 -39.12598 -37.89018 -37.34346 -34.78285 -33.99431 -32.69399 -31.48644 -29.83457 -28.37860 -25.47773 -25.12121 -25.05184 -24.18953 -22.97549 -22.36052 -21.33649 -20.69023 -19.51986 -19.10759 -18.45997 -17.77421 -17.04637 -16.92604 -16.40039 -15.99553 -15.41257 -15.32435 -15.04787 -14.80464 -14.55868 -14.39546 -14.08847 -13.96017 -13.47278 -13.03377 -12.88189 -12.45416 -12.27309 -12.13321 -12.04853 -11.90291 -11.78321 -11.55828 -11.26563 -11.11076 -10.92958 -10.72940 -10.58986 -10.51089 -10.38108 -10.23151 -10.02040 -9.69086 -9.53030 -9.21981 -8.90663 -8.75189 -6.97945 -5.79436 -3.08346 0.10801 0.58569 2.18782 2.54068 3.04511 3.17603 3.43163 3.45671 3.48738 3.50234 3.53121 3.72340 3.96501 4.16340 4.26877 4.39648 4.57992 4.60842 4.63716 4.80661 4.89884 4.99454 5.04594 5.06617 5.11916 5.23063 5.30192 5.37137 5.45887 5.47788 5.51924 5.64946 5.86711 5.93672 6.10996 6.26915 6.32213 6.46007 6.50706 6.61342 6.64386 6.72602 7.04509 7.16291 7.59893 7.69534 8.15000 8.38936 9.50371 10.07108 10.41673 11.42894 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030105 B = 0.001662 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.847754 B =16844.751685 C =17355.371487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.169 3.831 11 H 0.081 0.919 12 C -0.176 4.176 13 C 0.115 3.885 14 H 0.111 0.889 15 N -0.690 5.690 16 C 0.577 3.423 17 O -0.537 6.537 18 C -0.015 4.015 19 C 0.157 3.843 20 N -0.503 5.503 21 C 0.295 3.705 22 O -0.290 6.290 23 C 0.098 3.902 24 C -0.162 4.162 25 C -0.175 4.175 26 C -0.167 4.167 27 C 0.048 3.952 28 N -0.375 5.375 29 C -0.158 4.158 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.410 0.590 35 H 0.188 0.812 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.185 0.815 44 H 0.068 0.932 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.144 -30.010 8.686 31.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.347 5.347 10 C 0.056 3.944 11 H 0.099 0.901 12 C -0.218 4.218 13 C 0.011 3.989 14 H 0.129 0.871 15 N -0.339 5.339 16 C 0.361 3.639 17 O -0.414 6.414 18 C -0.154 4.154 19 C -0.002 4.002 20 N -0.232 5.232 21 C 0.112 3.888 22 O -0.194 6.194 23 C 0.023 3.977 24 C -0.180 4.180 25 C -0.212 4.212 26 C -0.204 4.204 27 C -0.119 4.119 28 N -0.092 5.092 29 C -0.197 4.197 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.246 0.754 35 H 0.204 0.796 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.202 0.798 44 H 0.086 0.914 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.430 -29.957 8.738 31.674 hybrid contribution -0.321 0.794 0.189 0.877 sum -5.750 -29.163 8.927 31.036 Atomic orbital electron populations 1.69655 1.05148 1.25771 1.57454 1.24763 0.95527 0.97801 1.02742 0.86179 0.78699 0.83719 0.77529 1.21667 1.21782 1.20689 1.19322 0.91166 0.84151 1.42963 0.90957 1.42356 1.05715 0.99746 1.86932 1.21377 0.95490 0.84939 0.92563 0.90147 1.24376 1.01958 0.94896 1.00583 1.22616 0.93143 0.87384 0.95790 0.87093 1.45925 1.11352 1.21269 1.55396 1.17471 0.86813 0.81072 0.78547 1.90800 1.15303 1.75995 1.59335 1.22092 0.91472 0.97978 1.03874 1.23551 1.00771 0.87575 0.88295 1.68265 1.01577 1.31934 1.21423 1.21270 0.87674 0.89645 0.90224 1.86218 1.32243 1.32525 1.68427 1.22293 0.94844 0.83782 0.96770 1.22154 1.00681 0.89901 1.05282 1.23126 1.03013 0.98467 0.96633 1.23006 1.02484 0.99924 0.94993 1.22985 1.01611 0.89362 0.97971 1.68391 1.01919 1.27047 1.11846 1.23863 1.01372 0.97150 0.97359 0.93456 0.78049 0.90117 0.92089 0.75426 0.79559 0.90623 0.90941 0.86413 0.88263 0.88441 0.88322 0.88010 0.79810 0.91353 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.71 -17.49 5.41 -52.55 -0.28 -17.77 16 10 C 0.17 3.27 4.48 -67.02 -0.30 2.97 16 11 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 12 C -0.18 -3.09 7.70 -25.82 -0.20 -3.28 16 13 C 0.12 1.73 4.21 -67.11 -0.28 1.45 16 14 H 0.11 1.68 7.50 -51.93 -0.39 1.29 16 15 N -0.69 -9.49 5.35 -53.94 -0.29 -9.77 16 16 C 0.58 8.15 7.80 -12.31 -0.10 8.05 16 17 O -0.54 -8.82 15.95 5.32 0.08 -8.74 16 18 C -0.02 -0.18 6.74 -82.88 -0.56 -0.74 16 19 C 0.16 1.67 10.76 -17.01 -0.18 1.49 16 20 N -0.50 -5.14 9.37 -12.76 -0.12 -5.26 16 21 C 0.30 2.82 7.50 -16.71 -0.13 2.69 16 22 O -0.29 -2.46 10.12 -18.15 -0.18 -2.64 16 23 C 0.10 0.67 5.60 37.16 0.21 0.88 16 24 C -0.16 -0.88 6.06 -90.61 -0.55 -1.43 16 25 C -0.18 -0.79 10.18 -26.73 -0.27 -1.07 16 26 C -0.17 -0.70 10.25 -26.73 -0.27 -0.97 16 27 C 0.05 0.44 11.18 -17.17 -0.19 0.24 16 28 N -0.37 -4.17 9.70 -9.49 -0.09 -4.26 16 29 C -0.16 -2.48 7.58 -25.92 -0.20 -2.67 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.39 10.03 7.93 -40.82 -0.32 9.71 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.41 5.18 8.05 -40.82 -0.33 4.85 16 35 H 0.19 1.74 7.64 -52.49 -0.40 1.34 16 36 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 37 H 0.07 0.49 7.85 -51.93 -0.41 0.09 16 38 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.43 8.03 -51.93 -0.42 0.01 16 41 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.18 1.15 8.06 -52.48 -0.42 0.73 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.08 1.32 8.09 -51.93 -0.42 0.90 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -31.92 387.83 -9.06 -40.98 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -6.46 Total: 11.26 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -3.27 Total: 0.29 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: -0.06 Total: -64.23 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.10 Total: -11.38 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.92 -9.06 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022966509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.805 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds