Wall clock time and date at job start Tue Mar 31 2020 16:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99934 * 2 1 4 4 H 1.48497 * 109.47274 * 270.00355 * 3 2 1 5 5 H 1.48505 * 109.47231 * 30.00370 * 3 2 1 6 6 H 1.48508 * 109.47314 * 150.00213 * 3 2 1 7 7 C 1.38813 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00558 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99772 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99916 * 180.02562 * 9 7 2 11 11 H 1.08994 * 112.85093 * 336.20188 * 10 9 7 12 12 C 1.53960 * 113.73912 * 107.40689 * 10 9 7 13 13 C 1.53782 * 87.01730 * 139.94683 * 12 10 9 14 14 H 1.08996 * 113.61880 * 89.22865 * 13 12 10 15 15 N 1.46509 * 113.60955 * 220.04637 * 13 12 10 16 16 C 1.34771 * 119.99963 * 254.13351 * 15 13 12 17 17 O 1.21557 * 120.00240 * 0.02562 * 16 15 13 18 18 C 1.47904 * 120.00117 * 179.97438 * 16 15 13 19 19 C 1.39430 * 120.02577 * 180.02562 * 18 16 15 20 20 N 1.32050 * 119.95523 * 179.70267 * 19 18 16 21 21 C 1.32607 * 120.01028 * 0.55139 * 20 19 18 22 22 O 1.35487 * 119.97436 * 179.72143 * 21 20 19 23 23 C 1.42895 * 117.00196 * 359.73061 * 22 21 20 24 24 C 1.53003 * 109.47298 * 179.97438 * 23 22 21 25 25 C 1.53001 * 117.51964 * 116.28202 * 24 23 22 26 26 C 1.52999 * 60.00190 * 107.47982 * 25 24 23 27 27 C 1.39589 * 120.05183 * 359.45194 * 21 20 19 28 28 N 1.31558 * 120.04007 * 0.26999 * 27 21 20 29 29 C 1.53778 * 87.17313 * 334.63546 * 13 12 10 30 30 H 0.96994 * 120.00378 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00259 * 0.02562 * 9 7 2 32 32 H 1.08989 * 113.61409 * 25.42303 * 12 10 9 33 33 H 1.09004 * 113.66221 * 254.46958 * 12 10 9 34 34 H 0.97002 * 119.99503 * 74.13469 * 15 13 12 35 35 H 1.07998 * 120.02304 * 0.02562 * 19 18 16 36 36 H 1.08999 * 109.47440 * 59.99451 * 23 22 21 37 37 H 1.09005 * 109.46905 * 299.99611 * 23 22 21 38 38 H 1.09002 * 115.54973 * 330.57985 * 24 23 22 39 39 H 1.09001 * 117.49733 * 214.97413 * 25 24 23 40 40 H 1.08995 * 117.49577 * 359.97438 * 25 24 23 41 41 H 1.09004 * 117.50150 * 252.51496 * 26 25 24 42 42 H 1.09004 * 117.49681 * 107.48417 * 26 25 24 43 43 H 1.08003 * 119.98211 * 180.25429 * 27 21 20 44 44 H 1.08999 * 113.61351 * 139.94587 * 29 13 12 45 45 H 1.09004 * 113.61558 * 270.76306 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 3.0657 -3.5638 -0.4058 12 6 2.0030 -4.4043 1.3443 13 6 1.8499 -5.6981 0.5272 14 1 2.7998 -6.1644 0.2656 15 7 0.8906 -6.6448 1.1015 16 6 1.3308 -7.7572 1.7221 17 8 2.5237 -7.9748 1.8058 18 6 0.3623 -8.7126 2.3025 19 6 0.8172 -9.8633 2.9451 20 7 -0.0485 -10.7125 3.4679 21 6 -1.3499 -10.4762 3.3721 22 8 -2.2376 -11.3508 3.9038 23 6 -1.7016 -12.5084 4.5476 24 6 -2.8468 -13.3709 5.0822 25 6 -3.0153 -14.7702 4.4868 26 6 -2.4761 -14.6039 5.9089 27 6 -1.8057 -9.3244 2.7287 28 7 -0.9449 -8.4743 2.2119 29 6 1.2604 -4.8288 -0.5960 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 1.1262 -4.1602 1.9438 33 1 2.9325 -4.3536 1.9115 34 1 -0.0614 -6.4709 1.0351 35 1 1.8769 -10.0575 3.0199 36 1 -1.0621 -12.2008 5.3750 37 1 -1.1164 -13.0846 3.8309 38 1 -3.7512 -12.8307 5.3619 39 1 -4.0307 -15.1505 4.3748 40 1 -2.3106 -15.0764 3.7138 41 1 -1.4164 -14.8007 6.0717 42 1 -3.1368 -14.8747 6.7326 43 1 -2.8657 -9.1310 2.6549 44 1 1.5910 -5.1203 -1.5929 45 1 0.1798 -4.7021 -0.5287 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022966509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:56 Heat of formation + Delta-G solvation = 13.866730 kcal Electronic energy + Delta-G solvation = -26499.777129 eV Core-core repulsion = 22518.954843 eV Total energy + Delta-G solvation = -3980.822287 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.61843 -41.02885 -39.95547 -39.13525 -37.83381 -35.88309 -35.43383 -34.16577 -32.42001 -31.64698 -28.99827 -26.74916 -26.50968 -25.80271 -25.72540 -23.76699 -23.29145 -21.93531 -21.70808 -20.93205 -19.82164 -19.42640 -19.14939 -18.57790 -17.59906 -17.49375 -16.83455 -16.47308 -16.32940 -16.12053 -15.97708 -15.75476 -15.32325 -15.00054 -14.95379 -14.88260 -14.46276 -14.12220 -13.63834 -13.30097 -13.15161 -13.04707 -13.00639 -12.81043 -12.43187 -12.34241 -12.25157 -12.22922 -12.19962 -12.06435 -11.77299 -11.53455 -11.47949 -11.34190 -11.01024 -10.85342 -10.46005 -10.14428 -9.85969 -8.97280 -7.93694 -5.21826 -0.73440 -0.19130 1.49378 1.50348 1.52038 1.54896 1.58845 2.00008 2.56605 2.58176 2.73699 2.82347 2.90382 3.22553 3.37897 3.65695 3.69770 3.75726 3.85389 3.88108 3.94102 3.99110 4.07300 4.18149 4.27750 4.32439 4.37921 4.43200 4.50671 4.71577 4.76450 4.81699 4.90601 4.91356 4.99224 5.12971 5.16839 5.17710 5.21507 5.35148 5.51874 5.65173 5.80562 5.84848 6.28305 6.29798 6.54330 7.05054 7.35123 8.11000 8.34207 9.29420 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030105 B = 0.001662 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.847754 B =16844.751685 C =17355.371487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.724 5.724 10 C 0.151 3.849 11 H 0.083 0.917 12 C -0.170 4.170 13 C 0.134 3.866 14 H 0.116 0.884 15 N -0.687 5.687 16 C 0.579 3.421 17 O -0.564 6.564 18 C -0.033 4.033 19 C 0.160 3.840 20 N -0.509 5.509 21 C 0.299 3.701 22 O -0.289 6.289 23 C 0.097 3.903 24 C -0.172 4.172 25 C -0.176 4.176 26 C -0.160 4.160 27 C 0.054 3.946 28 N -0.385 5.385 29 C -0.140 4.140 30 H 0.251 0.749 31 H 0.375 0.625 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.416 0.584 35 H 0.195 0.805 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.214 0.786 44 H 0.086 0.914 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.337 -31.675 8.999 33.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.377 4.377 8 H 0.095 0.905 9 N -0.361 5.361 10 C 0.040 3.960 11 H 0.101 0.899 12 C -0.212 4.212 13 C 0.029 3.971 14 H 0.134 0.866 15 N -0.337 5.337 16 C 0.365 3.635 17 O -0.443 6.443 18 C -0.170 4.170 19 C 0.002 3.998 20 N -0.238 5.238 21 C 0.115 3.885 22 O -0.193 6.193 23 C 0.022 3.978 24 C -0.191 4.191 25 C -0.213 4.213 26 C -0.197 4.197 27 C -0.114 4.114 28 N -0.102 5.102 29 C -0.180 4.180 30 H 0.059 0.941 31 H 0.207 0.793 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.253 0.747 35 H 0.212 0.788 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.130 0.870 43 H 0.231 0.769 44 H 0.105 0.895 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.588 -31.676 9.055 33.415 hybrid contribution -0.309 1.138 0.159 1.190 sum -5.896 -30.538 9.214 32.438 Atomic orbital electron populations 1.69804 1.06551 1.26028 1.59517 1.25539 0.96364 1.01030 1.03739 0.85169 0.77698 0.79639 0.77428 1.21334 1.22377 1.19565 1.19723 0.91631 0.85370 1.41019 0.90450 1.42510 1.05387 1.00818 1.87391 1.21708 0.95871 0.84052 0.94334 0.89885 1.24198 1.01274 0.96209 0.99558 1.22310 0.93593 0.86742 0.94421 0.86613 1.45816 1.11426 1.21042 1.55366 1.17718 0.86844 0.81081 0.77895 1.90780 1.16527 1.76624 1.60331 1.21768 0.91604 0.98220 1.05434 1.23639 1.01270 0.87126 0.87796 1.68303 1.01961 1.31898 1.21680 1.21471 0.87597 0.89848 0.89615 1.86234 1.32129 1.32788 1.68124 1.22419 0.95535 0.83320 0.96554 1.22144 1.00297 0.90155 1.06462 1.23203 1.03554 0.97565 0.96946 1.23102 1.02992 0.98491 0.95137 1.23457 1.02584 0.88611 0.96754 1.68358 1.01726 1.27751 1.12384 1.23670 1.00949 0.94940 0.98396 0.94057 0.79264 0.91421 0.92331 0.74689 0.78780 0.90813 0.90978 0.86406 0.87504 0.88418 0.87957 0.86972 0.76914 0.89543 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 2 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 3 Si 0.97 46.02 29.55 68.60 2.03 48.05 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.25 -13.53 9.97 84.03 0.84 -12.70 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.72 -35.86 5.41 -320.15 -1.73 -37.59 16 10 C 0.15 5.76 4.48 45.58 0.20 5.97 16 11 H 0.08 3.11 8.10 -2.39 -0.02 3.09 16 12 C -0.17 -5.91 7.70 31.18 0.24 -5.67 16 13 C 0.13 3.88 4.21 45.52 0.19 4.07 16 14 H 0.12 3.33 7.50 -2.39 -0.02 3.31 16 15 N -0.69 -18.17 5.35 -442.84 -2.37 -20.54 16 16 C 0.58 15.89 7.80 86.80 0.68 16.57 16 17 O -0.56 -18.16 15.95 -3.90 -0.06 -18.22 16 18 C -0.03 -0.75 6.74 41.79 0.28 -0.47 16 19 C 0.16 3.27 10.76 84.95 0.91 4.19 16 20 N -0.51 -9.78 9.37 -307.07 -2.88 -12.66 16 21 C 0.30 5.22 7.50 84.90 0.64 5.85 16 22 O -0.29 -4.43 10.12 -87.87 -0.89 -5.31 16 23 C 0.10 1.20 5.60 71.98 0.40 1.60 16 24 C -0.17 -1.61 6.06 -10.79 -0.07 -1.68 16 25 C -0.18 -1.30 10.18 30.59 0.31 -0.99 16 26 C -0.16 -1.06 10.25 30.60 0.31 -0.74 16 27 C 0.05 0.88 11.18 85.06 0.95 1.83 16 28 N -0.38 -8.02 9.70 -183.93 -1.78 -9.81 16 29 C -0.14 -4.22 7.58 31.12 0.24 -3.98 16 30 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.38 19.84 7.93 -92.71 -0.73 19.11 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.52 16 33 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.42 10.05 8.05 -92.71 -0.75 9.31 16 35 H 0.20 3.52 7.64 -2.91 -0.02 3.49 16 36 H 0.07 0.94 8.11 -2.39 -0.02 0.92 16 37 H 0.07 0.90 7.85 -2.38 -0.02 0.88 16 38 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.10 0.72 8.03 -2.39 -0.02 0.70 16 41 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 43 H 0.21 2.07 8.06 -2.91 -0.02 2.05 16 44 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.08 2.58 8.09 -2.39 -0.02 2.56 16 Total: -1.00 -67.80 387.83 -1.25 -69.05 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: -0.45 Total: 35.55 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 6.60 Total: 10.07 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -8.48 Total: -139.18 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.95 Total: -23.54 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -67.80 -1.25 -69.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022966509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.920 kcal (2) G-P(sol) polarization free energy of solvation -67.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds