Wall clock time and date at job start Tue Mar 31 2020 16:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00258 * 2 1 4 4 H 1.48493 * 109.47317 * 240.00361 * 3 2 1 5 5 H 1.48500 * 109.46701 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47027 * 119.99871 * 3 2 1 7 7 C 1.38811 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99864 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99909 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.89382 * 34.60792 * 10 9 7 12 12 C 1.53700 * 109.90128 * 273.54251 * 10 9 7 13 13 C 1.54065 * 106.68178 * 241.82282 * 12 10 9 14 14 C 1.54484 * 104.84051 * 336.66667 * 13 12 10 15 15 H 1.09004 * 113.38314 * 271.78618 * 14 13 12 16 16 C 1.54107 * 108.73308 * 144.68076 * 14 13 12 17 17 N 1.47068 * 107.53589 * 271.53947 * 16 14 13 18 18 C 1.34769 * 125.71235 * 182.01176 * 17 16 14 19 19 O 1.21573 * 120.00012 * 180.02562 * 18 17 16 20 20 C 1.47725 * 120.00034 * 0.02562 * 18 17 16 21 21 C 1.42160 * 126.00986 * 179.91829 * 20 18 17 22 22 C 1.36170 * 107.78874 * 180.27759 * 21 20 18 23 23 N 1.36295 * 107.24227 * 359.39972 * 22 21 20 24 24 N 1.31839 * 125.97142 * 359.97438 * 20 18 17 25 25 C 1.47429 * 107.80374 * 180.87067 * 23 22 21 26 26 C 1.54650 * 102.52831 * 15.41542 * 25 23 22 27 27 O 1.36123 * 140.88155 * 179.46769 * 22 21 20 28 28 C 1.47394 * 108.57520 * 2.27386 * 17 16 14 29 29 C 1.54960 * 104.90591 * 334.69328 * 28 17 16 30 30 H 1.09000 * 114.27483 * 274.89428 * 29 28 17 31 31 H 0.97001 * 119.99972 * 359.97438 * 1 2 3 32 32 H 0.96994 * 120.00298 * 359.97438 * 9 7 2 33 33 H 1.09000 * 110.01518 * 122.52101 * 12 10 9 34 34 H 1.08993 * 110.02003 * 1.12967 * 12 10 9 35 35 H 1.09001 * 110.36427 * 217.82783 * 13 12 10 36 36 H 1.08996 * 110.36512 * 95.51237 * 13 12 10 37 37 H 1.09004 * 109.83959 * 152.04091 * 16 14 13 38 38 H 1.08998 * 109.92479 * 31.08600 * 16 14 13 39 39 H 1.07998 * 126.18617 * 0.43200 * 21 20 18 40 40 H 1.09002 * 110.83127 * 257.10195 * 25 23 22 41 41 H 1.09000 * 110.82845 * 133.72905 * 25 23 22 42 42 H 1.09000 * 110.84832 * 93.22933 * 26 25 23 43 43 H 1.08994 * 110.85310 * 216.85832 * 26 25 23 44 44 H 1.08998 * 110.33007 * 93.68752 * 28 17 16 45 45 H 1.09005 * 110.32336 * 215.90630 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9740 -3.5562 0.5827 12 6 2.3969 -4.0652 -1.4419 13 6 1.6849 -5.4068 -1.7006 14 6 1.4735 -6.0194 -0.2982 15 1 2.3147 -6.6239 0.0411 16 6 0.1316 -6.7770 -0.2862 17 7 -0.9160 -5.8168 0.0928 18 6 -2.2236 -6.1015 0.2524 19 8 -3.0026 -5.2233 0.5684 20 6 -2.7102 -7.4805 0.0433 21 6 -4.0549 -7.9217 0.1778 22 6 -4.0839 -9.2559 -0.0928 23 7 -2.8107 -9.6340 -0.3986 24 7 -1.9729 -8.5182 -0.2999 25 6 -2.8316 -11.0739 -0.7147 26 6 -4.3382 -11.3482 -0.9300 27 8 -4.9524 -10.3023 -0.1549 28 6 -0.2974 -4.4898 0.2627 29 6 1.1840 -4.7822 0.6111 30 1 1.3674 -4.9662 1.6696 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3880 0.0005 33 1 3.4745 -4.1876 -1.5516 34 1 2.0340 -3.3098 -2.1387 35 1 2.3126 -6.0584 -2.3084 36 1 0.7255 -5.2388 -2.1898 37 1 0.1710 -7.5878 0.4412 38 1 -0.0766 -7.1794 -1.2776 39 1 -4.9033 -7.3090 0.4443 40 1 -2.4464 -11.6596 0.1200 41 1 -2.2664 -11.2794 -1.6237 42 1 -4.6025 -11.2567 -1.9835 43 1 -4.6129 -12.3297 -0.5438 44 1 -0.3658 -3.9188 -0.6632 45 1 -0.7783 -3.9495 1.0782 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026286044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:20 Heat of formation + Delta-G solvation = 65.299534 kcal Electronic energy + Delta-G solvation = -28728.676644 eV Core-core repulsion = 24750.084651 eV Total energy + Delta-G solvation = -3978.591993 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.49254 -40.36974 -39.01935 -37.91662 -35.05398 -33.60155 -33.21881 -30.91608 -30.56331 -29.17971 -28.86966 -28.31725 -25.70937 -24.67076 -23.59821 -23.17702 -21.99203 -21.62776 -19.62242 -19.17588 -18.82826 -17.93256 -17.35275 -17.12932 -16.65364 -16.02233 -15.84109 -15.37417 -15.06916 -14.94716 -14.76401 -14.40548 -13.95750 -13.78320 -13.37019 -13.14046 -13.04271 -12.83738 -12.74743 -12.50393 -12.39075 -12.16533 -11.68650 -11.52432 -11.26379 -11.14356 -10.75403 -10.64740 -10.49993 -10.40997 -10.20421 -10.11623 -9.98209 -9.70735 -9.55680 -9.44961 -8.85562 -8.79237 -8.38003 -6.91534 -5.70856 -3.00726 1.13287 1.52793 1.88964 2.42519 3.13885 3.39831 3.47690 3.49941 3.52070 3.53590 4.06056 4.13119 4.39455 4.55550 4.61315 4.63753 4.74877 4.83120 4.96084 4.97305 5.10380 5.32300 5.50744 5.56311 5.60207 5.61928 5.66681 5.71105 5.80989 5.97847 6.02126 6.02856 6.11932 6.16473 6.32316 6.42470 6.51334 6.56384 6.57611 6.60855 6.72665 6.83948 7.14769 7.20378 7.66053 7.75216 8.24665 8.47376 9.57944 10.15289 10.48668 11.51300 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024470 B = 0.002629 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.999548 B =10647.552825 C =11528.168638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.183 3.817 11 H 0.052 0.948 12 C -0.144 4.144 13 C -0.114 4.114 14 C -0.103 4.103 15 H 0.099 0.901 16 C 0.114 3.886 17 N -0.600 5.600 18 C 0.608 3.392 19 O -0.518 6.518 20 C 0.064 3.936 21 C -0.210 4.210 22 C 0.229 3.771 23 N -0.421 5.421 24 N -0.209 5.209 25 C 0.099 3.901 26 C 0.042 3.958 27 O -0.279 6.279 28 C 0.116 3.884 29 C -0.106 4.106 30 H 0.093 0.907 31 H 0.256 0.744 32 H 0.386 0.614 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.167 0.833 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.130 0.870 44 H 0.087 0.913 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.264 -27.775 -2.898 28.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.368 5.368 10 C 0.072 3.928 11 H 0.070 0.930 12 C -0.184 4.184 13 C -0.152 4.152 14 C -0.122 4.122 15 H 0.117 0.883 16 C -0.009 4.009 17 N -0.333 5.333 18 C 0.393 3.607 19 O -0.391 6.391 20 C -0.104 4.104 21 C -0.240 4.240 22 C 0.063 3.937 23 N -0.219 5.219 24 N -0.039 5.039 25 C -0.022 4.022 26 C -0.034 4.034 27 O -0.186 6.186 28 C -0.005 4.005 29 C -0.126 4.126 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.223 0.777 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.184 0.816 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.112 0.888 43 H 0.148 0.852 44 H 0.105 0.895 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.640 -27.667 -2.939 28.059 hybrid contribution -0.513 0.810 -0.002 0.959 sum -4.153 -26.857 -2.941 27.335 Atomic orbital electron populations 1.69649 1.05040 1.25853 1.57264 1.24750 0.95478 0.97651 1.02946 0.86293 0.78507 0.83749 0.77751 1.21355 1.21754 1.21331 1.19183 0.90945 0.84119 1.43090 0.91240 1.42699 1.05961 0.99640 1.88545 1.20861 0.93852 0.85486 0.92588 0.92979 1.22912 0.98851 0.95997 1.00684 1.22312 1.00660 0.97129 0.95101 1.23075 0.95789 0.96372 0.97013 0.88293 1.22074 0.86825 0.91442 1.00585 1.48417 1.06014 1.12054 1.66841 1.16344 0.81205 0.84627 0.78517 1.90868 1.54393 1.46198 1.47689 1.22309 0.92083 0.93832 1.02172 1.20350 0.97901 0.88885 1.16883 1.20818 0.81587 0.90744 1.00544 1.50858 1.06423 1.08127 1.56449 1.77821 1.13631 0.89671 1.22750 1.23201 0.98392 0.76164 1.04460 1.24453 0.88827 0.92211 0.97958 1.87145 1.38623 1.23059 1.69737 1.22446 0.92010 0.82812 1.03212 1.23595 0.94527 0.95291 0.99140 0.88899 0.93369 0.77718 0.93018 0.90728 0.92373 0.91846 0.91351 0.91122 0.81576 0.87812 0.87032 0.88780 0.85236 0.89482 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.66 9.95 -15.06 -0.15 -6.81 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.73 -17.83 4.78 -52.04 -0.25 -18.08 16 10 C 0.18 3.51 3.19 -66.50 -0.21 3.29 16 11 H 0.05 1.01 8.09 -51.93 -0.42 0.59 16 12 C -0.14 -2.46 6.54 -25.81 -0.17 -2.63 16 13 C -0.11 -1.60 5.60 -25.40 -0.14 -1.75 16 14 C -0.10 -1.36 4.09 -87.52 -0.36 -1.71 16 15 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 16 C 0.11 1.52 4.81 -3.15 -0.02 1.51 16 17 N -0.60 -9.90 3.32 -171.77 -0.57 -10.47 16 18 C 0.61 10.77 7.86 -12.39 -0.10 10.67 16 19 O -0.52 -10.87 17.15 5.30 0.09 -10.78 16 20 C 0.06 0.97 6.99 -82.48 -0.58 0.39 16 21 C -0.21 -2.89 10.67 -38.82 -0.41 -3.30 16 22 C 0.23 2.65 8.33 -16.31 -0.14 2.52 16 23 N -0.42 -4.51 5.02 -59.50 -0.30 -4.80 16 24 N -0.21 -2.81 10.18 33.56 0.34 -2.47 16 25 C 0.10 0.48 8.09 -2.67 -0.02 0.46 16 26 C 0.04 0.15 8.08 38.03 0.31 0.46 16 27 O -0.28 -2.50 11.19 -20.13 -0.23 -2.72 16 28 C 0.12 2.14 4.44 -2.52 -0.01 2.13 16 29 C -0.11 -1.72 4.26 -86.77 -0.37 -2.09 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.39 10.13 5.31 -40.82 -0.22 9.91 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.48 7.91 -51.93 -0.41 1.07 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.97 7.40 -51.93 -0.38 0.58 16 37 H 0.07 0.87 7.58 -51.93 -0.39 0.47 16 38 H 0.07 0.92 7.48 -51.93 -0.39 0.53 16 39 H 0.17 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.13 0.04 8.14 -51.93 -0.42 -0.38 16 44 H 0.09 1.79 6.29 -51.93 -0.33 1.46 16 45 H 0.08 1.75 7.99 -51.93 -0.42 1.33 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -35.01 361.36 -8.53 -43.55 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.31 Total: 7.82 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -2.46 Total: 2.71 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: -0.05 Total: -63.52 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.13 Total: -13.51 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.01 -8.53 -43.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026286044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.845 kcal (2) G-P(sol) polarization free energy of solvation -35.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds