Wall clock time and date at job start Tue Mar 31 2020 16:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00258 * 2 1 4 4 H 1.48493 * 109.47317 * 240.00361 * 3 2 1 5 5 H 1.48500 * 109.46701 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47027 * 119.99871 * 3 2 1 7 7 C 1.38811 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99864 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99909 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.89382 * 34.60792 * 10 9 7 12 12 C 1.53700 * 109.90128 * 273.54251 * 10 9 7 13 13 C 1.54065 * 106.68178 * 241.82282 * 12 10 9 14 14 C 1.54484 * 104.84051 * 336.66667 * 13 12 10 15 15 H 1.09004 * 113.38314 * 271.78618 * 14 13 12 16 16 C 1.54107 * 108.73308 * 144.68076 * 14 13 12 17 17 N 1.47068 * 107.53589 * 271.53947 * 16 14 13 18 18 C 1.34769 * 125.71235 * 182.01176 * 17 16 14 19 19 O 1.21573 * 120.00012 * 180.02562 * 18 17 16 20 20 C 1.47725 * 120.00034 * 0.02562 * 18 17 16 21 21 C 1.42160 * 126.00986 * 179.91829 * 20 18 17 22 22 C 1.36170 * 107.78874 * 180.27759 * 21 20 18 23 23 N 1.36295 * 107.24227 * 359.39972 * 22 21 20 24 24 N 1.31839 * 125.97142 * 359.97438 * 20 18 17 25 25 C 1.47429 * 107.80374 * 180.87067 * 23 22 21 26 26 C 1.54650 * 102.52831 * 15.41542 * 25 23 22 27 27 O 1.36123 * 140.88155 * 179.46769 * 22 21 20 28 28 C 1.47394 * 108.57520 * 2.27386 * 17 16 14 29 29 C 1.54960 * 104.90591 * 334.69328 * 28 17 16 30 30 H 1.09000 * 114.27483 * 274.89428 * 29 28 17 31 31 H 0.97001 * 119.99972 * 359.97438 * 1 2 3 32 32 H 0.96994 * 120.00298 * 359.97438 * 9 7 2 33 33 H 1.09000 * 110.01518 * 122.52101 * 12 10 9 34 34 H 1.08993 * 110.02003 * 1.12967 * 12 10 9 35 35 H 1.09001 * 110.36427 * 217.82783 * 13 12 10 36 36 H 1.08996 * 110.36512 * 95.51237 * 13 12 10 37 37 H 1.09004 * 109.83959 * 152.04091 * 16 14 13 38 38 H 1.08998 * 109.92479 * 31.08600 * 16 14 13 39 39 H 1.07998 * 126.18617 * 0.43200 * 21 20 18 40 40 H 1.09002 * 110.83127 * 257.10195 * 25 23 22 41 41 H 1.09000 * 110.82845 * 133.72905 * 25 23 22 42 42 H 1.09000 * 110.84832 * 93.22933 * 26 25 23 43 43 H 1.08994 * 110.85310 * 216.85832 * 26 25 23 44 44 H 1.08998 * 110.33007 * 93.68752 * 28 17 16 45 45 H 1.09005 * 110.32336 * 215.90630 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9740 -3.5562 0.5827 12 6 2.3969 -4.0652 -1.4419 13 6 1.6849 -5.4068 -1.7006 14 6 1.4735 -6.0194 -0.2982 15 1 2.3147 -6.6239 0.0411 16 6 0.1316 -6.7770 -0.2862 17 7 -0.9160 -5.8168 0.0928 18 6 -2.2236 -6.1015 0.2524 19 8 -3.0026 -5.2233 0.5684 20 6 -2.7102 -7.4805 0.0433 21 6 -4.0549 -7.9217 0.1778 22 6 -4.0839 -9.2559 -0.0928 23 7 -2.8107 -9.6340 -0.3986 24 7 -1.9729 -8.5182 -0.2999 25 6 -2.8316 -11.0739 -0.7147 26 6 -4.3382 -11.3482 -0.9300 27 8 -4.9524 -10.3023 -0.1549 28 6 -0.2974 -4.4898 0.2627 29 6 1.1840 -4.7822 0.6111 30 1 1.3674 -4.9662 1.6696 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3880 0.0005 33 1 3.4745 -4.1876 -1.5516 34 1 2.0340 -3.3098 -2.1387 35 1 2.3126 -6.0584 -2.3084 36 1 0.7255 -5.2388 -2.1898 37 1 0.1710 -7.5878 0.4412 38 1 -0.0766 -7.1794 -1.2776 39 1 -4.9033 -7.3090 0.4443 40 1 -2.4464 -11.6596 0.1200 41 1 -2.2664 -11.2794 -1.6237 42 1 -4.6025 -11.2567 -1.9835 43 1 -4.6129 -12.3297 -0.5438 44 1 -0.3658 -3.9188 -0.6632 45 1 -0.7783 -3.9495 1.0782 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026286044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:19 Heat of formation + Delta-G solvation = 38.889561 kcal Electronic energy + Delta-G solvation = -28729.821867 eV Core-core repulsion = 24750.084651 eV Total energy + Delta-G solvation = -3979.737216 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.30056 -41.66990 -40.07355 -39.09757 -36.67249 -34.97652 -34.25555 -32.72050 -31.54740 -30.30707 -29.88253 -29.75805 -27.12910 -25.86808 -25.14149 -24.28090 -23.03367 -22.49060 -20.91126 -20.39693 -20.29833 -19.19167 -18.69212 -18.15459 -17.46398 -17.31319 -16.91801 -16.72947 -16.34341 -16.15842 -15.99503 -15.63791 -15.13194 -15.06823 -14.46903 -14.37312 -14.32461 -13.97612 -13.91890 -13.77664 -13.57827 -13.24290 -13.11312 -12.98794 -12.57720 -12.39991 -12.27995 -12.18616 -12.16367 -11.81371 -11.64977 -11.54477 -11.44230 -11.39774 -11.13183 -10.88487 -10.28996 -9.78590 -9.66535 -8.96174 -7.90138 -5.18997 0.08247 0.77109 0.90316 1.47357 1.50786 1.56311 1.57066 2.10438 2.13428 2.58469 2.96576 3.26977 3.37058 3.42484 3.51612 3.76031 3.81802 3.86965 4.03626 4.22588 4.23309 4.25140 4.31253 4.39732 4.42758 4.43810 4.49145 4.63127 4.64775 4.66593 4.73459 4.77182 4.80554 4.92926 5.07631 5.08404 5.14737 5.26123 5.27636 5.34278 5.52230 5.54156 5.68371 5.77167 6.25409 6.31750 6.38401 6.89201 7.36987 8.15787 8.35996 9.33301 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024470 B = 0.002629 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.999548 B =10647.552825 C =11528.168638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.082 4.082 3 Si 0.972 3.028 4 H -0.277 1.277 5 H -0.301 1.301 6 H -0.277 1.277 7 C -0.235 4.235 8 H 0.080 0.920 9 N -0.741 5.741 10 C 0.173 3.827 11 H 0.055 0.945 12 C -0.137 4.137 13 C -0.107 4.107 14 C -0.083 4.083 15 H 0.142 0.858 16 C 0.116 3.884 17 N -0.599 5.599 18 C 0.603 3.397 19 O -0.568 6.568 20 C 0.043 3.957 21 C -0.241 4.241 22 C 0.242 3.758 23 N -0.411 5.411 24 N -0.210 5.210 25 C 0.088 3.912 26 C 0.039 3.961 27 O -0.289 6.289 28 C 0.124 3.876 29 C -0.099 4.099 30 H 0.105 0.895 31 H 0.248 0.752 32 H 0.373 0.627 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.094 0.906 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.158 0.842 40 H 0.127 0.873 41 H 0.138 0.862 42 H 0.110 0.890 43 H 0.171 0.829 44 H 0.058 0.942 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 -32.263 -3.636 32.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.228 1.228 6 H -0.203 1.203 7 C -0.367 4.367 8 H 0.098 0.902 9 N -0.383 5.383 10 C 0.064 3.936 11 H 0.074 0.926 12 C -0.177 4.177 13 C -0.144 4.144 14 C -0.101 4.101 15 H 0.159 0.841 16 C -0.005 4.005 17 N -0.331 5.331 18 C 0.389 3.611 19 O -0.446 6.446 20 C -0.122 4.122 21 C -0.271 4.271 22 C 0.074 3.926 23 N -0.210 5.210 24 N -0.041 5.041 25 C -0.030 4.030 26 C -0.036 4.036 27 O -0.196 6.196 28 C 0.002 3.998 29 C -0.119 4.119 30 H 0.123 0.877 31 H 0.057 0.943 32 H 0.208 0.792 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.113 0.887 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.176 0.824 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.128 0.872 43 H 0.188 0.812 44 H 0.076 0.924 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.448 -32.252 -3.700 32.496 hybrid contribution -1.192 1.957 0.178 2.298 sum -2.640 -30.295 -3.522 30.613 Atomic orbital electron populations 1.69843 1.06776 1.25931 1.59935 1.25586 0.96257 1.01219 1.04261 0.85220 0.77080 0.79308 0.78214 1.20310 1.22751 1.20298 1.19635 0.91524 0.85210 1.40325 0.90242 1.42953 1.05665 1.01057 1.88594 1.21187 0.93853 0.84227 0.94348 0.92646 1.22716 1.00414 0.96737 0.97816 1.22271 1.00020 0.95956 0.96182 1.23146 0.96963 0.94845 0.95187 0.84072 1.22250 0.85696 0.90990 1.01576 1.48480 1.06448 1.11828 1.66310 1.16795 0.81099 0.85566 0.77593 1.90822 1.55698 1.48078 1.49993 1.21761 0.92862 0.92906 1.04716 1.20348 0.97485 0.90491 1.18809 1.20672 0.82580 0.90526 0.98862 1.51295 1.05631 1.09540 1.54557 1.77651 1.13946 0.90038 1.22424 1.23829 0.99707 0.72732 1.06731 1.24976 0.87611 0.92281 0.98699 1.87166 1.38767 1.23200 1.70491 1.22112 0.93745 0.83589 1.00391 1.23530 0.91893 0.96047 1.00448 0.87717 0.94279 0.79240 0.90762 0.94345 0.88717 0.93735 0.89614 0.90120 0.82427 0.85478 0.84393 0.87210 0.81192 0.92404 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.56 13.06 21.65 0.28 -62.28 16 2 C -0.08 -4.82 5.50 84.86 0.47 -4.36 16 3 Si 0.97 47.52 29.55 68.60 2.03 49.55 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 5 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.24 -13.19 9.95 84.03 0.84 -12.36 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 9 N -0.74 -37.87 4.78 -318.54 -1.52 -39.39 16 10 C 0.17 6.58 3.19 45.92 0.15 6.73 16 11 H 0.06 2.08 8.09 -2.39 -0.02 2.06 16 12 C -0.14 -4.51 6.54 31.19 0.20 -4.31 16 13 C -0.11 -2.73 5.60 31.46 0.18 -2.55 16 14 C -0.08 -1.91 4.09 -8.79 -0.04 -1.94 16 15 H 0.14 2.25 8.14 -2.38 -0.02 2.23 16 16 C 0.12 2.87 4.81 86.65 0.42 3.29 16 17 N -0.60 -20.37 3.32 -815.62 -2.71 -23.08 16 18 C 0.60 22.68 7.86 86.75 0.68 23.36 16 19 O -0.57 -26.17 17.15 -3.95 -0.07 -26.24 16 20 C 0.04 1.34 6.99 42.63 0.30 1.64 16 21 C -0.24 -6.85 10.67 22.76 0.24 -6.61 16 22 C 0.24 5.28 8.33 83.52 0.70 5.98 16 23 N -0.41 -7.71 5.02 -452.65 -2.27 -9.99 16 24 N -0.21 -5.29 10.18 -47.72 -0.49 -5.78 16 25 C 0.09 0.45 8.09 86.76 0.70 1.15 16 26 C 0.04 0.11 8.08 72.54 0.59 0.70 16 27 O -0.29 -4.45 11.19 -94.95 -1.06 -5.51 16 28 C 0.12 4.86 4.44 86.88 0.39 5.25 16 29 C -0.10 -3.18 4.26 -8.30 -0.04 -3.22 16 30 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 32 H 0.37 20.95 5.31 -92.71 -0.49 20.46 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.04 1.54 7.91 -2.39 -0.02 1.53 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.04 1.32 7.40 -2.39 -0.02 1.30 16 37 H 0.09 1.89 7.58 -2.38 -0.02 1.87 16 38 H 0.08 1.89 7.48 -2.39 -0.02 1.87 16 39 H 0.16 4.51 8.06 -2.91 -0.02 4.49 16 40 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.17 -0.85 8.14 -2.39 -0.02 -0.87 16 44 H 0.06 2.60 6.29 -2.39 -0.02 2.58 16 45 H 0.05 2.22 7.99 -2.38 -0.02 2.20 16 Total: -1.00 -83.28 361.36 0.48 -82.80 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.53 Total: 27.17 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 5.77 Total: 12.75 kcal Atomic # 7 Polarization: -133.81 SS G_CDS: -6.71 Total: -140.52 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.13 Total: -31.75 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -83.28 0.48 -82.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026286044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.685 kcal (2) G-P(sol) polarization free energy of solvation -83.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds