Wall clock time and date at job start Tue Mar 31 2020 16:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00071 * 2 1 4 4 H 1.48501 * 109.46997 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47040 * 299.99631 * 3 2 1 6 6 H 1.48497 * 109.47232 * 60.00132 * 3 2 1 7 7 C 1.38817 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99836 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00213 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99992 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.47108 * 32.35597 * 10 9 7 12 12 C 1.56005 * 110.52315 * 269.56543 * 10 9 7 13 13 C 1.57718 * 105.64526 * 234.91661 * 12 10 9 14 14 C 1.51551 * 101.18175 * 333.80972 * 13 12 10 15 15 H 1.09006 * 111.53913 * 289.09266 * 14 13 12 16 16 C 1.51521 * 123.35126 * 152.74515 * 14 13 12 17 17 N 1.49622 * 102.67080 * 208.26239 * 16 14 13 18 18 C 1.34781 * 126.07337 * 205.74045 * 17 16 14 19 19 O 1.21569 * 120.00144 * 180.02562 * 18 17 16 20 20 C 1.47722 * 119.99670 * 0.02562 * 18 17 16 21 21 C 1.40950 * 125.97179 * 180.02562 * 20 18 17 22 22 C 1.36168 * 107.94797 * 179.76886 * 21 20 18 23 23 N 1.35795 * 107.31477 * 0.53555 * 22 21 20 24 24 N 1.31833 * 125.97616 * 359.69189 * 20 18 17 25 25 C 1.47432 * 108.07212 * 179.17479 * 23 22 21 26 26 C 1.54645 * 102.34796 * 344.69377 * 25 23 22 27 27 O 1.36120 * 140.87367 * 180.69567 * 22 21 20 28 28 C 1.49788 * 107.59859 * 25.67694 * 17 16 14 29 29 C 1.49702 * 110.52674 * 154.99775 * 10 9 7 30 30 H 1.09002 * 108.55118 * 40.64420 * 29 10 9 31 31 H 0.96998 * 119.99752 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99961 * 359.97438 * 9 7 2 33 33 H 1.09000 * 110.19032 * 353.48829 * 12 10 9 34 34 H 1.08996 * 110.18849 * 115.26390 * 12 10 9 35 35 H 1.09000 * 110.63452 * 216.15592 * 13 12 10 36 36 H 1.08999 * 111.87927 * 91.99799 * 13 12 10 37 37 H 1.09002 * 110.80211 * 326.61120 * 16 14 13 38 38 H 1.09004 * 110.80449 * 89.91664 * 16 14 13 39 39 H 1.08002 * 126.02302 * 359.80456 * 21 20 18 40 40 H 1.08989 * 110.83360 * 226.47736 * 25 23 22 41 41 H 1.09000 * 110.82804 * 102.90296 * 25 23 22 42 42 H 1.09000 * 110.85314 * 266.66140 * 26 25 23 43 43 H 1.08998 * 111.03205 * 143.10924 * 26 25 23 44 44 H 1.08991 * 110.36297 * 247.56210 * 28 17 16 45 45 H 1.08998 * 110.46256 * 125.24600 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9957 -3.5557 0.5460 12 6 2.3219 -4.1360 -1.4615 13 6 1.7283 -5.5949 -1.5444 14 6 1.8221 -6.0330 -0.0966 15 1 2.8560 -6.2029 0.2039 16 6 0.8971 -7.0599 0.5245 17 7 0.8709 -6.6503 1.9633 18 6 0.6173 -7.4562 3.0134 19 8 0.6239 -7.0043 4.1420 20 6 0.3314 -8.8886 2.7929 21 6 0.0503 -9.8404 3.7939 22 6 -0.1608 -11.0399 3.1849 23 7 -0.0050 -10.8482 1.8496 24 7 0.2884 -9.4990 1.6252 25 6 -0.2106 -12.1427 1.1746 26 6 -0.1096 -13.1465 2.3467 27 8 -0.4716 -12.3324 3.4774 28 6 1.1785 -5.1855 2.0228 29 6 1.2201 -4.7467 0.5920 30 1 0.1967 -4.6301 0.2355 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3881 0.0002 33 1 1.8068 -3.4866 -2.1693 34 1 3.3922 -4.1426 -1.6678 35 1 2.3466 -6.2254 -2.1834 36 1 0.6930 -5.5934 -1.8851 37 1 -0.0991 -6.9989 0.0863 38 1 1.3053 -8.0648 0.4155 39 1 0.0090 -9.6514 4.8564 40 1 0.5729 -12.3252 0.4394 41 1 -1.1962 -12.1859 0.7112 42 1 0.9085 -13.5221 2.4492 43 1 -0.8136 -13.9687 2.2193 44 1 2.1448 -5.0200 2.4992 45 1 0.3943 -4.6530 2.5608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026286045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:24 Heat of formation + Delta-G solvation = 78.331258 kcal Electronic energy + Delta-G solvation = -28297.670388 eV Core-core repulsion = 24319.643493 eV Total energy + Delta-G solvation = -3978.026895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.64209 -40.47157 -39.19462 -38.08049 -35.27597 -33.69293 -33.33577 -30.89732 -30.75845 -29.31215 -29.06509 -28.35891 -25.58522 -24.77509 -23.52276 -23.01931 -22.01312 -21.70546 -20.13929 -19.26761 -19.04614 -17.94341 -17.30755 -16.94988 -16.74899 -16.45729 -15.82996 -15.36933 -15.23417 -14.85357 -14.61980 -14.51481 -14.03041 -13.90429 -13.71172 -13.42389 -13.20539 -12.87041 -12.80286 -12.60176 -12.33743 -11.87595 -11.73504 -11.53027 -11.40484 -11.17125 -10.90465 -10.80446 -10.75841 -10.44775 -10.11879 -10.09134 -10.01323 -9.74528 -9.55901 -9.52511 -8.89930 -8.86040 -8.58559 -6.95407 -5.75663 -3.04619 1.05801 1.46168 1.82005 2.34287 2.92429 3.30280 3.43617 3.44822 3.50650 3.52732 3.99761 4.05063 4.21133 4.38678 4.53883 4.59880 4.70311 4.84247 4.91491 4.99550 5.13623 5.25453 5.34778 5.45421 5.52438 5.56995 5.63868 5.67835 5.83678 5.91218 5.94746 5.99467 6.06559 6.13793 6.18192 6.25612 6.36763 6.42572 6.49778 6.54002 6.68111 6.81595 7.07930 7.12615 7.49699 7.72778 8.10218 8.42582 9.54041 10.10789 10.45302 11.46856 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027559 B = 0.002347 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.772027 B =11927.468227 C =12598.539467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.720 5.720 10 C 0.198 3.802 11 H 0.057 0.943 12 C -0.142 4.142 13 C -0.099 4.099 14 C -0.127 4.127 15 H 0.086 0.914 16 C 0.119 3.881 17 N -0.610 5.610 18 C 0.613 3.387 19 O -0.525 6.525 20 C 0.064 3.936 21 C -0.213 4.213 22 C 0.232 3.768 23 N -0.416 5.416 24 N -0.214 5.214 25 C 0.098 3.902 26 C 0.041 3.959 27 O -0.279 6.279 28 C 0.136 3.864 29 C -0.121 4.121 30 H 0.077 0.923 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.166 0.834 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.131 0.869 44 H 0.073 0.927 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.439 -29.630 0.039 29.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.087 3.913 11 H 0.075 0.925 12 C -0.183 4.183 13 C -0.137 4.137 14 C -0.147 4.147 15 H 0.104 0.896 16 C -0.003 4.003 17 N -0.344 5.344 18 C 0.398 3.602 19 O -0.399 6.399 20 C -0.103 4.103 21 C -0.243 4.243 22 C 0.065 3.935 23 N -0.213 5.213 24 N -0.044 5.044 25 C -0.023 4.023 26 C -0.035 4.035 27 O -0.186 6.186 28 C 0.015 3.985 29 C -0.141 4.141 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.183 0.817 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.148 0.852 44 H 0.092 0.908 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.557 -29.286 -0.435 29.294 hybrid contribution -0.059 0.564 0.529 0.776 sum 0.498 -28.721 0.094 28.726 Atomic orbital electron populations 1.69670 1.05100 1.25547 1.57702 1.24749 0.95502 0.97708 1.02997 0.86136 0.78807 0.84221 0.77142 1.20554 1.21958 1.21888 1.19293 0.91038 0.84073 1.42577 0.91072 1.42514 1.05700 0.99672 1.88147 1.19957 0.94169 0.84900 0.92275 0.92527 1.24031 0.99765 0.93994 1.00539 1.22077 1.01075 0.97149 0.93446 1.22600 0.99454 0.95225 0.97388 0.89567 1.21932 0.99939 0.98831 0.79583 1.49809 1.67979 1.10091 1.06516 1.16356 0.77732 0.82244 0.83914 1.90834 1.52474 1.74568 1.22060 1.21936 1.02710 0.95131 0.90476 1.20053 1.15994 0.87153 1.01060 1.20749 0.99518 0.87225 0.86032 1.50810 1.56708 1.07323 1.06434 1.77841 1.22321 0.83766 1.20430 1.23244 1.05304 0.76797 0.96933 1.24458 1.04049 0.93874 0.81103 1.87149 1.79074 1.12831 1.39561 1.21150 1.01931 0.77925 0.97458 1.22125 1.02048 0.96290 0.93678 0.90488 0.93568 0.78155 0.90847 0.92562 0.92285 0.91418 0.90956 0.89155 0.81665 0.86883 0.87638 0.88774 0.85162 0.90832 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.50 9.96 -15.06 -0.15 -6.65 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -17.50 5.10 -53.45 -0.27 -17.78 16 10 C 0.20 3.76 3.45 -67.95 -0.23 3.52 16 11 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 12 C -0.14 -2.35 6.79 -22.54 -0.15 -2.50 16 13 C -0.10 -1.30 6.69 -24.88 -0.17 -1.47 16 14 C -0.13 -1.68 3.12 -89.45 -0.28 -1.96 16 15 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 16 C 0.12 1.54 5.94 -3.05 -0.02 1.52 16 17 N -0.61 -9.27 3.44 -172.29 -0.59 -9.87 16 18 C 0.61 9.94 7.89 -12.38 -0.10 9.84 16 19 O -0.53 -9.97 17.28 5.30 0.09 -9.88 16 20 C 0.06 0.91 6.95 -82.97 -0.58 0.33 16 21 C -0.21 -2.71 10.60 -39.30 -0.42 -3.13 16 22 C 0.23 2.51 8.32 -16.54 -0.14 2.38 16 23 N -0.42 -4.18 5.01 -59.64 -0.30 -4.48 16 24 N -0.21 -2.72 9.81 33.32 0.33 -2.39 16 25 C 0.10 0.42 8.10 -2.67 -0.02 0.40 16 26 C 0.04 0.13 8.08 38.02 0.31 0.44 16 27 O -0.28 -2.33 11.19 -20.12 -0.23 -2.55 16 28 C 0.14 2.21 6.86 -3.83 -0.03 2.19 16 29 C -0.12 -1.97 2.18 -91.23 -0.20 -2.17 16 30 H 0.08 1.33 7.76 -51.93 -0.40 0.93 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.38 10.01 7.66 -40.82 -0.31 9.70 16 33 H 0.07 1.38 7.98 -51.93 -0.41 0.96 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.11 6.21 -51.93 -0.32 0.78 16 39 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 40 H 0.11 0.26 8.14 -51.94 -0.42 -0.16 16 41 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 43 H 0.13 -0.02 8.14 -51.93 -0.42 -0.44 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -34.34 367.64 -8.49 -42.82 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.49 Total: 6.27 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.26 Total: 2.26 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.11 Total: -61.79 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.13 Total: -12.43 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.34 -8.49 -42.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026286045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.152 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds