Wall clock time and date at job start Tue Mar 31 2020 16:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00071 * 2 1 4 4 H 1.48501 * 109.46997 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47040 * 299.99631 * 3 2 1 6 6 H 1.48497 * 109.47232 * 60.00132 * 3 2 1 7 7 C 1.38817 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99836 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00213 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99992 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.47108 * 32.35597 * 10 9 7 12 12 C 1.56005 * 110.52315 * 269.56543 * 10 9 7 13 13 C 1.57718 * 105.64526 * 234.91661 * 12 10 9 14 14 C 1.51551 * 101.18175 * 333.80972 * 13 12 10 15 15 H 1.09006 * 111.53913 * 289.09266 * 14 13 12 16 16 C 1.51521 * 123.35126 * 152.74515 * 14 13 12 17 17 N 1.49622 * 102.67080 * 208.26239 * 16 14 13 18 18 C 1.34781 * 126.07337 * 205.74045 * 17 16 14 19 19 O 1.21569 * 120.00144 * 180.02562 * 18 17 16 20 20 C 1.47722 * 119.99670 * 0.02562 * 18 17 16 21 21 C 1.40950 * 125.97179 * 180.02562 * 20 18 17 22 22 C 1.36168 * 107.94797 * 179.76886 * 21 20 18 23 23 N 1.35795 * 107.31477 * 0.53555 * 22 21 20 24 24 N 1.31833 * 125.97616 * 359.69189 * 20 18 17 25 25 C 1.47432 * 108.07212 * 179.17479 * 23 22 21 26 26 C 1.54645 * 102.34796 * 344.69377 * 25 23 22 27 27 O 1.36120 * 140.87367 * 180.69567 * 22 21 20 28 28 C 1.49788 * 107.59859 * 25.67694 * 17 16 14 29 29 C 1.49702 * 110.52674 * 154.99775 * 10 9 7 30 30 H 1.09002 * 108.55118 * 40.64420 * 29 10 9 31 31 H 0.96998 * 119.99752 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99961 * 359.97438 * 9 7 2 33 33 H 1.09000 * 110.19032 * 353.48829 * 12 10 9 34 34 H 1.08996 * 110.18849 * 115.26390 * 12 10 9 35 35 H 1.09000 * 110.63452 * 216.15592 * 13 12 10 36 36 H 1.08999 * 111.87927 * 91.99799 * 13 12 10 37 37 H 1.09002 * 110.80211 * 326.61120 * 16 14 13 38 38 H 1.09004 * 110.80449 * 89.91664 * 16 14 13 39 39 H 1.08002 * 126.02302 * 359.80456 * 21 20 18 40 40 H 1.08989 * 110.83360 * 226.47736 * 25 23 22 41 41 H 1.09000 * 110.82804 * 102.90296 * 25 23 22 42 42 H 1.09000 * 110.85314 * 266.66140 * 26 25 23 43 43 H 1.08998 * 111.03205 * 143.10924 * 26 25 23 44 44 H 1.08991 * 110.36297 * 247.56210 * 28 17 16 45 45 H 1.08998 * 110.46256 * 125.24600 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9957 -3.5557 0.5460 12 6 2.3219 -4.1360 -1.4615 13 6 1.7283 -5.5949 -1.5444 14 6 1.8221 -6.0330 -0.0966 15 1 2.8560 -6.2029 0.2039 16 6 0.8971 -7.0599 0.5245 17 7 0.8709 -6.6503 1.9633 18 6 0.6173 -7.4562 3.0134 19 8 0.6239 -7.0043 4.1420 20 6 0.3314 -8.8886 2.7929 21 6 0.0503 -9.8404 3.7939 22 6 -0.1608 -11.0399 3.1849 23 7 -0.0050 -10.8482 1.8496 24 7 0.2884 -9.4990 1.6252 25 6 -0.2106 -12.1427 1.1746 26 6 -0.1096 -13.1465 2.3467 27 8 -0.4716 -12.3324 3.4774 28 6 1.1785 -5.1855 2.0228 29 6 1.2201 -4.7467 0.5920 30 1 0.1967 -4.6301 0.2355 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3881 0.0002 33 1 1.8068 -3.4866 -2.1693 34 1 3.3922 -4.1426 -1.6678 35 1 2.3466 -6.2254 -2.1834 36 1 0.6930 -5.5934 -1.8851 37 1 -0.0991 -6.9989 0.0863 38 1 1.3053 -8.0648 0.4155 39 1 0.0090 -9.6514 4.8564 40 1 0.5729 -12.3252 0.4394 41 1 -1.1962 -12.1859 0.7112 42 1 0.9085 -13.5221 2.4492 43 1 -0.8136 -13.9687 2.2193 44 1 2.1448 -5.0200 2.4992 45 1 0.3943 -4.6530 2.5608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026286045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:23 Heat of formation + Delta-G solvation = 53.100773 kcal Electronic energy + Delta-G solvation = -28298.764464 eV Core-core repulsion = 24319.643493 eV Total energy + Delta-G solvation = -3979.120971 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.38356 -41.70370 -40.18724 -39.14414 -36.81384 -35.08114 -34.29561 -32.66282 -31.73816 -30.38947 -29.94406 -29.68723 -27.08704 -25.74966 -24.88966 -24.23131 -23.03397 -22.50905 -21.40370 -20.52699 -20.25397 -19.10255 -18.61657 -18.05741 -17.75559 -17.36156 -16.75752 -16.67108 -16.34848 -16.07402 -15.76892 -15.61710 -15.39324 -15.24911 -14.83348 -14.42293 -14.28657 -14.01873 -13.95759 -13.74187 -13.16726 -13.14916 -13.10313 -13.01334 -12.63255 -12.49018 -12.30093 -12.21381 -12.07652 -11.99193 -11.82846 -11.60330 -11.38747 -11.29912 -10.98126 -10.88687 -10.32452 -9.85095 -9.68162 -8.97125 -7.91800 -5.19564 0.09267 0.77704 0.91148 1.47496 1.49120 1.49178 1.58724 2.03813 2.14888 2.58024 2.90002 3.03038 3.32555 3.42495 3.63547 3.71168 3.86514 3.91547 4.02844 4.07008 4.24852 4.25213 4.30988 4.41231 4.45725 4.48640 4.51518 4.58214 4.64323 4.66847 4.72840 4.76428 4.78878 4.91599 4.93055 4.99152 5.11459 5.23052 5.26846 5.38254 5.50797 5.53345 5.65291 5.77090 6.22569 6.30617 6.34198 6.86528 7.36513 8.12958 8.35329 9.31919 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027559 B = 0.002347 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.772027 B =11927.468227 C =12598.539467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.298 1.298 7 C -0.232 4.232 8 H 0.077 0.923 9 N -0.733 5.733 10 C 0.189 3.811 11 H 0.051 0.949 12 C -0.136 4.136 13 C -0.085 4.085 14 C -0.105 4.105 15 H 0.095 0.905 16 C 0.126 3.874 17 N -0.609 5.609 18 C 0.610 3.390 19 O -0.565 6.565 20 C 0.045 3.955 21 C -0.240 4.240 22 C 0.242 3.758 23 N -0.408 5.408 24 N -0.220 5.220 25 C 0.087 3.913 26 C 0.039 3.961 27 O -0.291 6.291 28 C 0.137 3.863 29 C -0.121 4.121 30 H 0.065 0.935 31 H 0.249 0.751 32 H 0.372 0.628 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.160 0.840 40 H 0.139 0.861 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.169 0.831 44 H 0.071 0.929 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 -33.192 -1.710 33.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.225 1.225 7 C -0.364 4.364 8 H 0.095 0.905 9 N -0.373 5.373 10 C 0.080 3.920 11 H 0.069 0.931 12 C -0.176 4.176 13 C -0.123 4.123 14 C -0.125 4.125 15 H 0.114 0.886 16 C 0.006 3.994 17 N -0.342 5.342 18 C 0.396 3.604 19 O -0.443 6.443 20 C -0.120 4.120 21 C -0.270 4.270 22 C 0.073 3.927 23 N -0.206 5.206 24 N -0.051 5.051 25 C -0.031 4.031 26 C -0.035 4.035 27 O -0.197 6.197 28 C 0.016 3.984 29 C -0.142 4.142 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.204 0.796 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.178 0.822 40 H 0.157 0.843 41 H 0.143 0.857 42 H 0.129 0.871 43 H 0.187 0.813 44 H 0.089 0.911 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.691 -32.927 -2.227 33.045 hybrid contribution -0.394 1.430 1.056 1.821 sum 1.296 -31.497 -1.170 31.545 Atomic orbital electron populations 1.69825 1.06586 1.25760 1.60028 1.25529 0.96326 1.00999 1.04241 0.85124 0.78372 0.80181 0.76429 1.18912 1.22194 1.22521 1.19669 0.91442 0.85189 1.40138 0.90497 1.42710 1.05295 1.00919 1.88352 1.20223 0.93762 0.83617 0.94363 0.93077 1.23824 1.00629 0.95832 0.97317 1.22003 1.01752 0.94894 0.93630 1.22574 0.99806 0.92988 0.97083 0.88625 1.22001 1.00230 0.99328 0.77880 1.49830 1.67541 1.09319 1.07525 1.16707 0.76935 0.83300 0.83422 1.90795 1.54267 1.75641 1.23574 1.21499 1.04878 0.94035 0.91578 1.20083 1.17670 0.88218 1.01033 1.20649 0.98019 0.87811 0.86220 1.51222 1.54808 1.07530 1.07065 1.77664 1.22481 0.85343 1.19658 1.23845 1.07442 0.74024 0.97790 1.24959 1.06390 0.93585 0.78590 1.87166 1.78871 1.11845 1.41852 1.20994 1.01014 0.78966 0.97383 1.21898 1.01135 0.97211 0.93907 0.91664 0.94231 0.79629 0.93320 0.91122 0.88955 0.91099 0.90479 0.87576 0.82198 0.84287 0.85689 0.87058 0.81333 0.91063 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.16 13.06 21.65 0.28 -59.87 16 2 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 3 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 7 C -0.23 -12.82 9.96 84.04 0.84 -11.99 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.73 -36.58 5.10 -323.01 -1.65 -38.23 16 10 C 0.19 7.20 3.45 44.98 0.16 7.35 16 11 H 0.05 1.99 8.09 -2.39 -0.02 1.97 16 12 C -0.14 -4.28 6.79 33.31 0.23 -4.06 16 13 C -0.08 -1.97 6.69 31.79 0.21 -1.75 16 14 C -0.10 -2.56 3.12 -10.04 -0.03 -2.59 16 15 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 16 C 0.13 3.05 5.94 85.29 0.51 3.56 16 17 N -0.61 -18.68 3.44 -817.27 -2.81 -21.49 16 18 C 0.61 20.42 7.89 86.75 0.68 21.10 16 19 O -0.57 -22.71 17.28 -3.93 -0.07 -22.77 16 20 C 0.05 1.27 6.95 42.32 0.29 1.57 16 21 C -0.24 -6.18 10.60 22.45 0.24 -5.95 16 22 C 0.24 4.88 8.32 83.60 0.70 5.57 16 23 N -0.41 -7.16 5.01 -453.36 -2.27 -9.43 16 24 N -0.22 -5.24 9.81 -48.51 -0.48 -5.71 16 25 C 0.09 0.39 8.10 86.76 0.70 1.09 16 26 C 0.04 0.08 8.08 72.54 0.59 0.66 16 27 O -0.29 -4.08 11.19 -94.92 -1.06 -5.14 16 28 C 0.14 4.65 6.86 84.69 0.58 5.23 16 29 C -0.12 -3.97 2.18 -11.19 -0.02 -3.99 16 30 H 0.06 2.30 7.76 -2.39 -0.02 2.29 16 31 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.37 20.18 7.66 -92.71 -0.71 19.47 16 33 H 0.05 1.79 7.98 -2.39 -0.02 1.78 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.11 2.31 6.21 -2.39 -0.01 2.30 16 39 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 40 H 0.14 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.17 -0.95 8.14 -2.39 -0.02 -0.97 16 44 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -78.18 367.64 0.41 -77.77 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.31 Total: 24.42 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.13 Total: 11.71 kcal Atomic # 7 Polarization: -127.81 SS G_CDS: -6.93 Total: -134.74 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -1.13 Total: -27.91 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -78.18 0.41 -77.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026286045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.869 kcal (2) G-P(sol) polarization free energy of solvation -78.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds