Wall clock time and date at job start Tue Mar 31 2020 16:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99748 * 2 1 4 4 H 1.48494 * 109.47495 * 270.00180 * 3 2 1 5 5 H 1.48505 * 109.46864 * 30.00325 * 3 2 1 6 6 H 1.48504 * 109.47139 * 149.99797 * 3 2 1 7 7 C 1.38812 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99687 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00282 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99883 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.40529 * 32.53494 * 10 9 7 12 12 C 1.54827 * 110.45828 * 269.92781 * 10 9 7 13 13 C 1.56519 * 103.25422 * 203.49063 * 12 10 9 14 14 C 1.54144 * 103.54832 * 37.29216 * 13 12 10 15 15 H 1.08992 * 111.89505 * 100.36820 * 14 13 12 16 16 C 1.54469 * 108.79853 * 224.56204 * 14 13 12 17 17 N 1.48338 * 104.41906 * 139.44957 * 16 14 13 18 18 C 1.34780 * 128.19342 * 138.29343 * 17 16 14 19 19 O 1.21576 * 119.99978 * 180.02562 * 18 17 16 20 20 C 1.47721 * 120.00156 * 0.02860 * 18 17 16 21 21 C 1.40942 * 125.97103 * 180.02562 * 20 18 17 22 22 C 1.36179 * 107.94745 * 179.76664 * 21 20 18 23 23 N 1.35801 * 107.30933 * 0.53556 * 22 21 20 24 24 N 1.31838 * 125.97329 * 359.68706 * 20 18 17 25 25 C 1.47437 * 108.06537 * 179.17559 * 23 22 21 26 26 C 1.54645 * 102.34895 * 344.69091 * 25 23 22 27 27 O 1.36116 * 140.87613 * 180.69174 * 22 21 20 28 28 C 1.48446 * 103.55552 * 318.40576 * 17 16 14 29 29 C 1.54145 * 110.45282 * 155.00163 * 10 9 7 30 30 H 1.08995 * 112.66176 * 19.39596 * 29 10 9 31 31 H 0.96998 * 120.00211 * 359.97438 * 1 2 3 32 32 H 0.96994 * 119.99628 * 0.02562 * 9 7 2 33 33 H 1.08997 * 110.76222 * 321.36771 * 12 10 9 34 34 H 1.08996 * 110.76053 * 84.74804 * 12 10 9 35 35 H 1.09002 * 110.39452 * 279.04804 * 13 12 10 36 36 H 1.09003 * 111.29114 * 155.95954 * 13 12 10 37 37 H 1.09002 * 110.46557 * 258.22294 * 16 14 13 38 38 H 1.08997 * 110.46482 * 20.68147 * 16 14 13 39 39 H 1.07997 * 126.03221 * 359.72938 * 21 20 18 40 40 H 1.08999 * 110.82710 * 226.47287 * 25 23 22 41 41 H 1.08999 * 110.99406 * 102.98309 * 25 23 22 42 42 H 1.09005 * 110.85054 * 266.66168 * 26 25 23 43 43 H 1.08996 * 110.85085 * 143.02998 * 26 25 23 44 44 H 1.09001 * 110.34499 * 282.89446 * 28 17 16 45 45 H 1.09001 * 110.60840 * 160.42368 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6568 -0.0017 11 1 2.9946 -3.5554 0.5471 12 6 2.3262 -4.1257 -1.4527 13 6 2.5179 -5.6716 -1.3006 14 6 1.4937 -6.0575 -0.2152 15 1 0.5889 -6.4875 -0.6446 16 6 2.1695 -7.0186 0.7877 17 7 1.6743 -6.5763 2.1142 18 6 1.2754 -7.3389 3.1514 19 8 0.8930 -6.8147 4.1796 20 6 1.3030 -8.8116 3.0391 21 6 0.9160 -9.7255 4.0398 22 6 1.0839 -10.9837 3.5466 23 7 1.5712 -10.8615 2.2849 24 7 1.6881 -9.5006 1.9832 25 6 1.7784 -12.2163 1.7415 26 6 1.7139 -13.0956 3.0120 27 8 0.9222 -12.2876 3.9022 28 6 1.7198 -5.0951 2.0264 29 6 1.1945 -4.7781 0.6088 30 1 0.1321 -4.5345 0.6134 31 1 -0.4850 0.8400 0.0004 32 1 0.3557 -2.3881 -0.0005 33 1 1.4684 -3.9150 -2.0914 34 1 3.2281 -3.6595 -1.8491 35 1 3.5306 -5.8977 -0.9666 36 1 2.2985 -6.1913 -2.2333 37 1 1.8678 -8.0475 0.5919 38 1 3.2540 -6.9237 0.7348 39 1 0.5511 -9.4728 5.0243 40 1 2.7546 -12.2969 1.2634 41 1 0.9840 -12.4832 1.0446 42 1 2.7108 -13.2604 3.4208 43 1 1.2174 -14.0432 2.8032 44 1 2.7438 -4.7400 2.1417 45 1 1.0743 -4.6461 2.7813 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026286046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:27 Heat of formation + Delta-G solvation = 63.778470 kcal Electronic energy + Delta-G solvation = -28343.714172 eV Core-core repulsion = 24365.056220 eV Total energy + Delta-G solvation = -3978.657951 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.65223 -40.25203 -39.04226 -37.99149 -35.12024 -33.69891 -33.27433 -30.96734 -30.68699 -29.28661 -29.02789 -28.27324 -25.41916 -24.75045 -23.73465 -22.88525 -22.15952 -21.71827 -20.17820 -19.10888 -18.94607 -17.95068 -17.38576 -17.00261 -16.79247 -16.12153 -15.75664 -15.47707 -15.41792 -15.05736 -14.62682 -14.25621 -14.15015 -13.83640 -13.63665 -13.23312 -13.07874 -12.97834 -12.80939 -12.58335 -12.31062 -11.86270 -11.75759 -11.60214 -11.17191 -11.14036 -10.81625 -10.76207 -10.58999 -10.31179 -10.22600 -10.17586 -9.95010 -9.89067 -9.62890 -9.56440 -8.87065 -8.85756 -8.63721 -6.92326 -5.74114 -3.02819 1.03813 1.44912 1.80593 2.34431 2.99993 3.28997 3.43227 3.45712 3.51028 3.52719 4.00254 4.06218 4.32393 4.51753 4.60313 4.68801 4.72262 4.75820 4.90604 4.99463 5.02407 5.24175 5.42642 5.49891 5.50150 5.59228 5.65012 5.72720 5.81404 5.88564 5.96226 6.01524 6.11302 6.13802 6.24381 6.28448 6.38958 6.44167 6.50828 6.59351 6.72473 6.83315 7.07422 7.11984 7.57953 7.72885 8.10847 8.44386 9.55534 10.13322 10.47352 11.48414 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027872 B = 0.002374 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.364042 B =11790.311727 C =12479.228217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.185 3.815 11 H 0.058 0.942 12 C -0.140 4.140 13 C -0.117 4.117 14 C -0.101 4.101 15 H 0.082 0.918 16 C 0.098 3.902 17 N -0.609 5.609 18 C 0.617 3.383 19 O -0.524 6.524 20 C 0.066 3.934 21 C -0.213 4.213 22 C 0.233 3.767 23 N -0.416 5.416 24 N -0.216 5.216 25 C 0.097 3.903 26 C 0.042 3.958 27 O -0.279 6.279 28 C 0.116 3.884 29 C -0.107 4.107 30 H 0.090 0.910 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.166 0.834 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.131 0.869 44 H 0.079 0.921 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.147 -29.829 1.760 30.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.074 3.926 11 H 0.076 0.924 12 C -0.181 4.181 13 C -0.155 4.155 14 C -0.121 4.121 15 H 0.101 0.899 16 C -0.025 4.025 17 N -0.342 5.342 18 C 0.403 3.597 19 O -0.399 6.399 20 C -0.101 4.101 21 C -0.242 4.242 22 C 0.065 3.935 23 N -0.212 5.212 24 N -0.046 5.046 25 C -0.023 4.023 26 C -0.035 4.035 27 O -0.186 6.186 28 C -0.005 4.005 29 C -0.127 4.127 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.184 0.816 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.148 0.852 44 H 0.097 0.903 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.381 -29.547 1.335 30.063 hybrid contribution -0.081 0.592 0.464 0.756 sum 5.300 -28.955 1.800 29.491 Atomic orbital electron populations 1.69660 1.05092 1.25648 1.57625 1.24743 0.95496 0.97684 1.03015 0.86211 0.78684 0.83982 0.77436 1.21808 1.21823 1.20767 1.19235 0.90970 0.84111 1.42689 0.91178 1.42449 1.05737 0.99700 1.88137 1.21102 0.93784 0.85154 0.92587 0.92392 1.23511 1.01369 0.92513 1.00722 1.22680 0.97745 0.97720 0.97378 1.22726 0.98755 0.95265 0.95359 0.89947 1.23036 0.98495 1.00102 0.80875 1.49044 1.62606 1.08477 1.14032 1.16319 0.78054 0.82675 0.82702 1.90841 1.47842 1.72519 1.28658 1.21947 1.01551 0.94613 0.91983 1.20057 1.15995 0.85336 1.02854 1.20750 0.98857 0.86944 0.86905 1.50829 1.52818 1.05191 1.12394 1.77743 1.24049 0.82059 1.20717 1.23246 1.05729 0.75486 0.97887 1.24464 0.97755 0.95149 0.86093 1.87149 1.64904 1.11613 1.54925 1.22732 1.02027 0.77463 0.98309 1.23086 1.01351 0.95186 0.93074 0.89201 0.93520 0.78149 0.91676 0.92250 0.91792 0.92145 0.88483 0.90754 0.81633 0.86902 0.87637 0.88732 0.85161 0.90286 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.52 9.96 -15.06 -0.15 -6.67 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.62 5.20 -51.92 -0.27 -17.89 16 10 C 0.18 3.51 3.08 -66.37 -0.20 3.30 16 11 H 0.06 1.12 7.12 -51.93 -0.37 0.75 16 12 C -0.14 -2.36 6.60 -23.87 -0.16 -2.52 16 13 C -0.12 -1.51 6.51 -24.24 -0.16 -1.66 16 14 C -0.10 -1.36 3.90 -88.14 -0.34 -1.71 16 15 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 16 C 0.10 1.24 6.24 -2.26 -0.01 1.23 16 17 N -0.61 -9.22 3.32 -169.95 -0.56 -9.78 16 18 C 0.62 10.03 7.93 -12.38 -0.10 9.93 16 19 O -0.52 -10.02 17.19 5.30 0.09 -9.93 16 20 C 0.07 0.93 6.98 -82.97 -0.58 0.35 16 21 C -0.21 -2.70 10.60 -39.30 -0.42 -3.12 16 22 C 0.23 2.51 8.32 -16.54 -0.14 2.37 16 23 N -0.42 -4.15 5.01 -59.63 -0.30 -4.45 16 24 N -0.22 -2.73 9.75 33.31 0.32 -2.40 16 25 C 0.10 0.41 8.10 -2.66 -0.02 0.39 16 26 C 0.04 0.13 8.08 38.02 0.31 0.43 16 27 O -0.28 -2.31 11.19 -20.11 -0.23 -2.54 16 28 C 0.12 1.88 6.58 -2.20 -0.01 1.87 16 29 C -0.11 -1.75 3.63 -88.14 -0.32 -2.07 16 30 H 0.09 1.60 7.83 -51.93 -0.41 1.20 16 31 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.38 10.09 7.63 -40.82 -0.31 9.78 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.75 7.19 -51.93 -0.37 0.38 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.10 1.19 5.44 -51.93 -0.28 0.91 16 38 H 0.07 0.88 7.21 -51.93 -0.37 0.51 16 39 H 0.17 1.97 8.06 -52.49 -0.42 1.54 16 40 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.13 -0.03 8.14 -51.93 -0.42 -0.45 16 44 H 0.08 1.24 7.20 -51.93 -0.37 0.87 16 45 H 0.09 1.53 7.89 -51.93 -0.41 1.12 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -34.62 364.45 -8.40 -43.03 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.25 Total: 6.84 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -2.40 Total: 1.65 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -0.08 Total: -61.94 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.13 Total: -12.47 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.62 -8.40 -43.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026286046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.807 kcal (2) G-P(sol) polarization free energy of solvation -34.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds