Wall clock time and date at job start Tue Mar 31 2020 16:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00518 * 2 1 4 4 H 1.48493 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46902 * 300.00027 * 3 2 1 6 6 H 1.48500 * 109.46833 * 59.99924 * 3 2 1 7 7 C 1.38815 * 119.99451 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00020 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99969 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99629 * 180.02562 * 9 7 2 11 11 H 1.08995 * 110.47104 * 32.35492 * 10 9 7 12 12 C 1.56002 * 110.52491 * 269.56355 * 10 9 7 13 13 C 1.56330 * 105.77143 * 248.33855 * 12 10 9 14 14 C 1.51558 * 101.81368 * 25.43456 * 13 12 10 15 15 H 1.09006 * 111.53695 * 71.63479 * 14 13 12 16 16 C 1.51527 * 123.34894 * 207.97880 * 14 13 12 17 17 N 1.49618 * 102.49358 * 151.64475 * 16 14 13 18 18 C 1.34777 * 126.07312 * 154.33596 * 17 16 14 19 19 O 1.21572 * 120.00086 * 180.02562 * 18 17 16 20 20 C 1.47720 * 119.99880 * 0.02562 * 18 17 16 21 21 C 1.40947 * 125.97520 * 180.02562 * 20 18 17 22 22 C 1.36170 * 107.94972 * 179.76673 * 21 20 18 23 23 N 1.35805 * 107.31568 * 0.53579 * 22 21 20 24 24 N 1.31840 * 125.97329 * 359.68894 * 20 18 17 25 25 C 1.47430 * 108.06903 * 179.17902 * 23 22 21 26 26 C 1.54644 * 102.35003 * 344.68917 * 25 23 22 27 27 O 1.36124 * 140.87419 * 180.69612 * 22 21 20 28 28 C 1.48097 * 107.63616 * 335.16646 * 17 16 14 29 29 C 1.49704 * 110.52312 * 154.99949 * 10 9 7 30 30 H 1.08999 * 108.54763 * 196.59891 * 29 10 9 31 31 H 0.97000 * 119.99482 * 0.02562 * 1 2 3 32 32 H 0.96995 * 120.00557 * 0.02562 * 9 7 2 33 33 H 1.09005 * 110.18898 * 7.41645 * 12 10 9 34 34 H 1.08999 * 110.19010 * 129.25773 * 12 10 9 35 35 H 1.09001 * 110.95963 * 267.30399 * 13 12 10 36 36 H 1.09006 * 110.99216 * 143.57990 * 13 12 10 37 37 H 1.09004 * 110.80203 * 269.89213 * 16 14 13 38 38 H 1.08999 * 110.79918 * 33.19389 * 16 14 13 39 39 H 1.07994 * 126.02241 * 359.74685 * 21 20 18 40 40 H 1.08995 * 110.82660 * 226.47546 * 25 23 22 41 41 H 1.09004 * 110.82478 * 102.90623 * 25 23 22 42 42 H 1.08997 * 110.85394 * 266.66596 * 26 25 23 43 43 H 1.08997 * 111.02640 * 143.10932 * 26 25 23 44 44 H 1.08998 * 109.83882 * 233.47860 * 28 17 16 45 45 H 1.08995 * 110.37224 * 111.45902 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3253 -2.3881 -0.0016 10 6 2.0578 -3.6569 -0.0016 11 1 2.9950 -3.5560 0.5456 12 6 2.3228 -4.1355 -1.4626 13 6 1.4452 -5.4146 -1.6564 14 6 0.3401 -5.1891 -0.6441 15 1 -0.3364 -4.3950 -0.9604 16 6 -0.4175 -6.3166 0.0272 17 7 -0.8110 -5.7080 1.3361 18 6 -1.8670 -6.0669 2.0928 19 8 -2.0851 -5.4943 3.1428 20 6 -2.7593 -7.1561 1.6462 21 6 -3.8940 -7.6315 2.3341 22 6 -4.4448 -8.6327 1.5935 23 7 -3.6743 -8.7871 0.4860 24 7 -2.6373 -7.8494 0.5314 25 6 -4.2453 -9.8821 -0.3193 26 6 -5.1990 -10.5692 0.6857 27 8 -5.4922 -9.5021 1.6062 28 6 0.1570 -4.6286 1.6381 29 6 1.2193 -4.7470 0.5898 30 1 1.8693 -5.5830 0.8480 31 1 -0.4849 0.8401 -0.0004 32 1 0.3554 -2.3881 -0.0023 33 1 2.0240 -3.3632 -2.1714 34 1 3.3771 -4.3792 -1.5932 35 1 2.0118 -6.3156 -1.4208 36 1 1.0432 -5.4627 -2.6684 37 1 -1.2989 -6.5901 -0.5530 38 1 0.2287 -7.1814 0.1776 39 1 -4.2614 -7.2664 3.2817 40 1 -3.4656 -10.5701 -0.6461 41 1 -4.7987 -9.4884 -1.1718 42 1 -4.6987 -11.3934 1.1940 43 1 -6.1064 -10.9145 0.1903 44 1 0.5832 -4.7806 2.6297 45 1 -0.3293 -3.6550 1.5778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026286047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:30 Heat of formation + Delta-G solvation = 79.021455 kcal Electronic energy + Delta-G solvation = -28664.215944 eV Core-core repulsion = 24686.218978 eV Total energy + Delta-G solvation = -3977.996966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.56903 -40.50896 -39.15405 -38.01165 -35.21555 -33.62136 -33.27645 -30.83830 -30.65719 -29.22555 -28.97557 -28.38182 -25.62339 -24.71591 -23.49305 -23.18213 -21.95070 -21.62567 -19.95424 -19.14162 -18.74903 -17.85957 -17.43096 -17.11960 -16.66842 -16.20116 -15.65319 -15.35010 -15.25604 -14.69315 -14.54700 -14.28367 -14.26732 -13.94385 -13.55516 -13.44742 -13.13054 -12.83535 -12.74030 -12.45356 -12.42916 -11.86636 -11.68286 -11.39747 -11.27290 -11.02832 -10.82963 -10.81049 -10.63956 -10.43774 -10.22477 -10.03592 -9.94832 -9.57634 -9.51752 -9.46454 -8.88425 -8.78308 -8.44307 -6.93401 -5.73418 -3.02474 1.13856 1.54081 1.89749 2.42088 3.04816 3.40584 3.46006 3.49873 3.51593 3.53992 4.05914 4.11674 4.27741 4.45536 4.59715 4.62255 4.76050 4.92427 4.98211 5.07744 5.22611 5.33005 5.42425 5.54055 5.59559 5.61291 5.68948 5.78028 5.86823 5.91055 5.99402 6.06643 6.13617 6.24832 6.33597 6.35072 6.44471 6.51492 6.59047 6.59888 6.71614 6.86538 7.08918 7.20745 7.60705 7.74636 8.22041 8.44703 9.56134 10.12975 10.47599 11.48951 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020290 B = 0.002678 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.648467 B =10452.960795 C =11123.820446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.197 3.803 11 H 0.057 0.943 12 C -0.145 4.145 13 C -0.097 4.097 14 C -0.127 4.127 15 H 0.093 0.907 16 C 0.118 3.882 17 N -0.606 5.606 18 C 0.612 3.388 19 O -0.523 6.523 20 C 0.066 3.934 21 C -0.212 4.212 22 C 0.232 3.768 23 N -0.417 5.417 24 N -0.214 5.214 25 C 0.098 3.902 26 C 0.042 3.958 27 O -0.279 6.279 28 C 0.133 3.867 29 C -0.121 4.121 30 H 0.069 0.931 31 H 0.254 0.746 32 H 0.385 0.615 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.166 0.834 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.130 0.870 44 H 0.071 0.929 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.484 -25.565 -2.471 26.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.086 3.914 11 H 0.075 0.925 12 C -0.186 4.186 13 C -0.135 4.135 14 C -0.146 4.146 15 H 0.111 0.889 16 C -0.003 4.003 17 N -0.339 5.339 18 C 0.397 3.603 19 O -0.397 6.397 20 C -0.101 4.101 21 C -0.242 4.242 22 C 0.064 3.936 23 N -0.213 5.213 24 N -0.044 5.044 25 C -0.023 4.023 26 C -0.035 4.035 27 O -0.186 6.186 28 C 0.012 3.988 29 C -0.141 4.141 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.219 0.781 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.183 0.817 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.148 0.852 44 H 0.089 0.911 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.045 -25.365 -2.863 26.480 hybrid contribution -0.423 0.782 0.352 0.956 sum -7.468 -24.582 -2.510 25.814 Atomic orbital electron populations 1.69670 1.05075 1.25545 1.57590 1.24745 0.95475 0.97666 1.03003 0.86149 0.78772 0.84322 0.77124 1.20595 1.22010 1.21912 1.19288 0.91022 0.84077 1.42662 0.91071 1.42445 1.05743 0.99581 1.88144 1.20027 0.93963 0.85217 0.92221 0.92455 1.23861 0.97909 0.96152 1.00644 1.21799 0.95579 0.98507 0.97626 1.22672 0.97217 0.98265 0.96430 0.88871 1.21937 0.99890 0.95223 0.83288 1.49341 1.26646 1.35726 1.22203 1.16337 0.79252 0.81246 0.83485 1.90839 1.71915 1.54070 1.22889 1.21946 0.97053 0.97996 0.93095 1.20055 0.98379 1.01832 1.03940 1.20743 0.86623 0.95439 0.90787 1.50812 1.22907 1.29206 1.18414 1.77846 1.05162 1.02035 1.19315 1.23234 0.97258 0.86712 0.95060 1.24448 1.00607 0.89854 0.88560 1.87147 1.35011 1.33692 1.62773 1.20789 0.89117 0.90782 0.98137 1.22071 0.96409 1.00885 0.94705 0.91226 0.93557 0.78095 0.90594 0.92868 0.92022 0.92140 0.89209 0.91179 0.81661 0.86938 0.87671 0.88824 0.85207 0.91086 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.90 22.42 29.55 -169.99 -5.02 17.40 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 7 C -0.24 -6.49 9.96 -15.06 -0.15 -6.64 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -17.34 4.86 -53.45 -0.26 -17.60 16 10 C 0.20 3.73 3.47 -67.95 -0.24 3.49 16 11 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 12 C -0.14 -2.39 6.74 -23.34 -0.16 -2.54 16 13 C -0.10 -1.31 6.62 -25.67 -0.17 -1.48 16 14 C -0.13 -1.91 3.05 -89.45 -0.27 -2.18 16 15 H 0.09 1.66 7.88 -51.93 -0.41 1.25 16 16 C 0.12 1.65 5.95 -3.05 -0.02 1.64 16 17 N -0.61 -10.01 3.40 -173.74 -0.59 -10.60 16 18 C 0.61 10.76 7.88 -12.39 -0.10 10.66 16 19 O -0.52 -10.70 17.27 5.30 0.09 -10.61 16 20 C 0.07 1.00 6.95 -82.96 -0.58 0.43 16 21 C -0.21 -2.92 10.60 -39.30 -0.42 -3.33 16 22 C 0.23 2.71 8.32 -16.54 -0.14 2.57 16 23 N -0.42 -4.54 5.01 -59.63 -0.30 -4.84 16 24 N -0.21 -2.92 9.81 33.32 0.33 -2.60 16 25 C 0.10 0.50 8.10 -2.67 -0.02 0.47 16 26 C 0.04 0.16 8.08 38.02 0.31 0.46 16 27 O -0.28 -2.53 11.19 -20.14 -0.23 -2.76 16 28 C 0.13 2.36 6.55 -4.79 -0.03 2.32 16 29 C -0.12 -1.97 2.32 -91.23 -0.21 -2.18 16 30 H 0.07 1.01 7.99 -51.93 -0.42 0.60 16 31 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.38 10.01 6.67 -40.82 -0.27 9.74 16 33 H 0.08 1.44 7.98 -51.93 -0.41 1.03 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.25 6.21 -51.93 -0.32 0.92 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.13 0.06 8.14 -51.93 -0.42 -0.36 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.09 1.82 7.17 -51.93 -0.37 1.45 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -34.43 365.01 -8.44 -42.87 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.40 Total: 7.42 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -2.29 Total: 3.22 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -0.10 Total: -63.04 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.13 Total: -13.37 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.43 -8.44 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026286047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.892 kcal (2) G-P(sol) polarization free energy of solvation -34.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds