Wall clock time and date at job start Tue Mar 31 2020 16:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00518 * 2 1 4 4 H 1.48493 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46902 * 300.00027 * 3 2 1 6 6 H 1.48500 * 109.46833 * 59.99924 * 3 2 1 7 7 C 1.38815 * 119.99451 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00020 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99969 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99629 * 180.02562 * 9 7 2 11 11 H 1.08995 * 110.47104 * 32.35492 * 10 9 7 12 12 C 1.56002 * 110.52491 * 269.56355 * 10 9 7 13 13 C 1.56330 * 105.77143 * 248.33855 * 12 10 9 14 14 C 1.51558 * 101.81368 * 25.43456 * 13 12 10 15 15 H 1.09006 * 111.53695 * 71.63479 * 14 13 12 16 16 C 1.51527 * 123.34894 * 207.97880 * 14 13 12 17 17 N 1.49618 * 102.49358 * 151.64475 * 16 14 13 18 18 C 1.34777 * 126.07312 * 154.33596 * 17 16 14 19 19 O 1.21572 * 120.00086 * 180.02562 * 18 17 16 20 20 C 1.47720 * 119.99880 * 0.02562 * 18 17 16 21 21 C 1.40947 * 125.97520 * 180.02562 * 20 18 17 22 22 C 1.36170 * 107.94972 * 179.76673 * 21 20 18 23 23 N 1.35805 * 107.31568 * 0.53579 * 22 21 20 24 24 N 1.31840 * 125.97329 * 359.68894 * 20 18 17 25 25 C 1.47430 * 108.06903 * 179.17902 * 23 22 21 26 26 C 1.54644 * 102.35003 * 344.68917 * 25 23 22 27 27 O 1.36124 * 140.87419 * 180.69612 * 22 21 20 28 28 C 1.48097 * 107.63616 * 335.16646 * 17 16 14 29 29 C 1.49704 * 110.52312 * 154.99949 * 10 9 7 30 30 H 1.08999 * 108.54763 * 196.59891 * 29 10 9 31 31 H 0.97000 * 119.99482 * 0.02562 * 1 2 3 32 32 H 0.96995 * 120.00557 * 0.02562 * 9 7 2 33 33 H 1.09005 * 110.18898 * 7.41645 * 12 10 9 34 34 H 1.08999 * 110.19010 * 129.25773 * 12 10 9 35 35 H 1.09001 * 110.95963 * 267.30399 * 13 12 10 36 36 H 1.09006 * 110.99216 * 143.57990 * 13 12 10 37 37 H 1.09004 * 110.80203 * 269.89213 * 16 14 13 38 38 H 1.08999 * 110.79918 * 33.19389 * 16 14 13 39 39 H 1.07994 * 126.02241 * 359.74685 * 21 20 18 40 40 H 1.08995 * 110.82660 * 226.47546 * 25 23 22 41 41 H 1.09004 * 110.82478 * 102.90623 * 25 23 22 42 42 H 1.08997 * 110.85394 * 266.66596 * 26 25 23 43 43 H 1.08997 * 111.02640 * 143.10932 * 26 25 23 44 44 H 1.08998 * 109.83882 * 233.47860 * 28 17 16 45 45 H 1.08995 * 110.37224 * 111.45902 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3253 -2.3881 -0.0016 10 6 2.0578 -3.6569 -0.0016 11 1 2.9950 -3.5560 0.5456 12 6 2.3228 -4.1355 -1.4626 13 6 1.4452 -5.4146 -1.6564 14 6 0.3401 -5.1891 -0.6441 15 1 -0.3364 -4.3950 -0.9604 16 6 -0.4175 -6.3166 0.0272 17 7 -0.8110 -5.7080 1.3361 18 6 -1.8670 -6.0669 2.0928 19 8 -2.0851 -5.4943 3.1428 20 6 -2.7593 -7.1561 1.6462 21 6 -3.8940 -7.6315 2.3341 22 6 -4.4448 -8.6327 1.5935 23 7 -3.6743 -8.7871 0.4860 24 7 -2.6373 -7.8494 0.5314 25 6 -4.2453 -9.8821 -0.3193 26 6 -5.1990 -10.5692 0.6857 27 8 -5.4922 -9.5021 1.6062 28 6 0.1570 -4.6286 1.6381 29 6 1.2193 -4.7470 0.5898 30 1 1.8693 -5.5830 0.8480 31 1 -0.4849 0.8401 -0.0004 32 1 0.3554 -2.3881 -0.0023 33 1 2.0240 -3.3632 -2.1714 34 1 3.3771 -4.3792 -1.5932 35 1 2.0118 -6.3156 -1.4208 36 1 1.0432 -5.4627 -2.6684 37 1 -1.2989 -6.5901 -0.5530 38 1 0.2287 -7.1814 0.1776 39 1 -4.2614 -7.2664 3.2817 40 1 -3.4656 -10.5701 -0.6461 41 1 -4.7987 -9.4884 -1.1718 42 1 -4.6987 -11.3934 1.1940 43 1 -6.1064 -10.9145 0.1903 44 1 0.5832 -4.7806 2.6297 45 1 -0.3293 -3.6550 1.5778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026286047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:30 Heat of formation + Delta-G solvation = 53.364845 kcal Electronic energy + Delta-G solvation = -28665.328498 eV Core-core repulsion = 24686.218978 eV Total energy + Delta-G solvation = -3979.109520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.38809 -41.81712 -40.21669 -39.15517 -36.76843 -35.07836 -34.30433 -32.58190 -31.72986 -30.35932 -29.96655 -29.75172 -27.09984 -25.74271 -25.15312 -24.23893 -23.02941 -22.50894 -21.18174 -20.34420 -20.18395 -19.36132 -18.62808 -18.05969 -17.74153 -17.27229 -16.75136 -16.64968 -16.29867 -16.17815 -15.80315 -15.65266 -15.36757 -15.15764 -14.86296 -14.62143 -14.33647 -13.99406 -13.82903 -13.73215 -13.31660 -13.12583 -13.08302 -12.89014 -12.64389 -12.43088 -12.23692 -12.17687 -12.10471 -11.97067 -11.89034 -11.51143 -11.37326 -11.31268 -10.93472 -10.84196 -10.32613 -9.81536 -9.68559 -8.95546 -7.90566 -5.18051 0.08801 0.78792 0.89473 1.47600 1.48592 1.51932 1.58255 2.04885 2.15208 2.58662 2.90738 3.03928 3.32723 3.43649 3.68058 3.75886 3.86330 3.92523 4.05161 4.09985 4.21625 4.24671 4.31111 4.41195 4.47557 4.48985 4.50512 4.63561 4.64906 4.69808 4.73388 4.78285 4.87424 4.94896 4.97138 5.07833 5.14490 5.24138 5.29084 5.39645 5.46367 5.56489 5.70552 5.76983 6.23368 6.31641 6.34723 6.87677 7.37384 8.15446 8.36870 9.33220 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020290 B = 0.002678 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.648467 B =10452.960795 C =11123.820446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.297 1.297 6 H -0.299 1.299 7 C -0.230 4.230 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.185 3.815 11 H 0.057 0.943 12 C -0.137 4.137 13 C -0.082 4.082 14 C -0.115 4.115 15 H 0.056 0.944 16 C 0.128 3.872 17 N -0.606 5.606 18 C 0.607 3.393 19 O -0.567 6.567 20 C 0.045 3.955 21 C -0.241 4.241 22 C 0.243 3.757 23 N -0.408 5.408 24 N -0.219 5.219 25 C 0.087 3.913 26 C 0.040 3.960 27 O -0.290 6.290 28 C 0.136 3.864 29 C -0.120 4.120 30 H 0.104 0.896 31 H 0.247 0.753 32 H 0.371 0.629 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.159 0.841 40 H 0.141 0.859 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.169 0.831 44 H 0.069 0.931 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.663 -29.462 -4.321 30.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.227 1.227 7 C -0.362 4.362 8 H 0.098 0.902 9 N -0.371 5.371 10 C 0.076 3.924 11 H 0.075 0.925 12 C -0.177 4.177 13 C -0.119 4.119 14 C -0.135 4.135 15 H 0.075 0.925 16 C 0.008 3.992 17 N -0.338 5.338 18 C 0.393 3.607 19 O -0.445 6.445 20 C -0.120 4.120 21 C -0.271 4.271 22 C 0.074 3.926 23 N -0.206 5.206 24 N -0.050 5.050 25 C -0.031 4.031 26 C -0.035 4.035 27 O -0.197 6.197 28 C 0.015 3.985 29 C -0.139 4.139 30 H 0.122 0.878 31 H 0.056 0.944 32 H 0.203 0.797 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.177 0.823 40 H 0.159 0.841 41 H 0.142 0.858 42 H 0.131 0.869 43 H 0.187 0.813 44 H 0.087 0.913 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.174 -29.343 -4.759 30.360 hybrid contribution -0.751 1.796 0.881 2.137 sum -6.925 -27.546 -3.878 28.667 Atomic orbital electron populations 1.69844 1.06697 1.25626 1.60242 1.25534 0.96246 1.01048 1.04451 0.85122 0.78451 0.80241 0.76285 1.18685 1.22413 1.22707 1.19705 0.91515 0.85174 1.39770 0.90231 1.42641 1.05303 1.00888 1.88243 1.20369 0.93825 0.83846 0.94367 0.92495 1.23651 1.00043 0.96779 0.97266 1.21766 0.94278 0.98144 0.97754 1.22587 0.96887 0.97638 0.96341 0.92538 1.22034 1.00338 0.95229 0.81637 1.49410 1.26169 1.35219 1.23047 1.16753 0.79389 0.81498 0.83012 1.90793 1.73028 1.55813 1.24817 1.21478 0.97598 0.98436 0.94455 1.20077 0.99050 1.03385 1.04609 1.20618 0.86773 0.94859 0.90373 1.51237 1.21564 1.28955 1.18865 1.77672 1.06403 1.02563 1.18370 1.23855 0.98272 0.85631 0.95360 1.24965 1.02413 0.88551 0.87566 1.87166 1.33973 1.34492 1.64080 1.20597 0.89617 0.89419 0.98915 1.21947 0.96439 1.00803 0.94748 0.87829 0.94398 0.79724 0.93685 0.90405 0.88384 0.90819 0.88831 0.88269 0.82290 0.84141 0.85813 0.86917 0.81333 0.91277 0.93913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.52 13.06 21.65 0.28 -61.24 16 2 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 3 Si 0.97 47.25 29.55 68.60 2.03 49.27 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 7 C -0.23 -12.69 9.96 84.03 0.84 -11.86 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.73 -36.49 4.86 -323.01 -1.57 -38.05 16 10 C 0.19 6.93 3.47 44.97 0.16 7.08 16 11 H 0.06 2.12 8.09 -2.39 -0.02 2.11 16 12 C -0.14 -4.25 6.74 32.79 0.22 -4.03 16 13 C -0.08 -1.93 6.62 31.28 0.21 -1.73 16 14 C -0.12 -3.34 3.05 -10.04 -0.03 -3.37 16 15 H 0.06 2.07 7.88 -2.38 -0.02 2.05 16 16 C 0.13 3.37 5.95 85.29 0.51 3.88 16 17 N -0.61 -20.50 3.40 -821.87 -2.80 -23.30 16 18 C 0.61 22.42 7.88 86.75 0.68 23.10 16 19 O -0.57 -24.97 17.27 -3.94 -0.07 -25.04 16 20 C 0.05 1.41 6.95 42.31 0.29 1.70 16 21 C -0.24 -6.82 10.60 22.45 0.24 -6.59 16 22 C 0.24 5.38 8.32 83.60 0.70 6.08 16 23 N -0.41 -7.94 5.01 -453.34 -2.27 -10.21 16 24 N -0.22 -5.71 9.81 -48.51 -0.48 -6.18 16 25 C 0.09 0.52 8.10 86.76 0.70 1.22 16 26 C 0.04 0.13 8.08 72.54 0.59 0.71 16 27 O -0.29 -4.55 11.19 -94.97 -1.06 -5.61 16 28 C 0.14 5.06 6.55 85.02 0.56 5.62 16 29 C -0.12 -3.82 2.32 -11.19 -0.03 -3.84 16 30 H 0.10 2.68 7.99 -2.39 -0.02 2.66 16 31 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 32 H 0.37 20.47 6.67 -92.71 -0.62 19.85 16 33 H 0.04 1.68 7.98 -2.38 -0.02 1.67 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.09 2.45 6.21 -2.38 -0.01 2.43 16 38 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.16 4.46 8.06 -2.91 -0.02 4.44 16 40 H 0.14 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.12 0.35 8.14 -2.38 -0.02 0.33 16 42 H 0.11 -0.01 8.14 -2.39 -0.02 -0.02 16 43 H 0.17 -0.74 8.14 -2.39 -0.02 -0.76 16 44 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.04 1.95 7.17 -2.39 -0.02 1.94 16 Total: -1.00 -80.90 365.01 0.56 -80.34 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.40 Total: 26.31 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 6.10 Total: 13.70 kcal Atomic # 7 Polarization: -132.15 SS G_CDS: -6.83 Total: -138.98 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -1.13 Total: -30.64 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.27 kcal Total: -80.90 0.56 -80.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026286047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.706 kcal (2) G-P(sol) polarization free energy of solvation -80.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds