Wall clock time and date at job start Tue Mar 31 2020 16:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00227 * 2 1 4 4 H 1.48503 * 109.47028 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47188 * 299.99495 * 3 2 1 6 6 H 1.48493 * 109.46999 * 60.00051 * 3 2 1 7 7 C 1.38815 * 119.99371 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99572 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00573 * 359.97438 * 7 2 1 10 10 C 1.48160 * 126.40309 * 359.97438 * 9 7 2 11 11 C 1.55284 * 107.04430 * 175.09607 * 10 9 7 12 12 C 1.53736 * 101.84176 * 337.51478 * 11 10 9 13 13 H 1.09001 * 111.30332 * 281.05107 * 12 11 10 14 14 C 1.51811 * 114.82618 * 152.90475 * 12 11 10 15 15 N 1.47715 * 106.58383 * 190.52586 * 14 12 11 16 16 C 1.34779 * 119.68297 * 232.03066 * 15 14 12 17 17 O 1.21579 * 119.99840 * 182.92841 * 16 15 14 18 18 C 1.47722 * 120.00356 * 2.93124 * 16 15 14 19 19 C 1.40934 * 125.97577 * 173.01957 * 18 16 15 20 20 C 1.36170 * 107.95185 * 179.82742 * 19 18 16 21 21 N 1.35805 * 107.31282 * 359.87589 * 20 19 18 22 22 N 1.31837 * 125.96785 * 353.19580 * 18 16 15 23 23 C 1.47431 * 108.07153 * 180.77531 * 21 20 19 24 24 C 1.54642 * 102.35745 * 15.18867 * 23 21 20 25 25 O 1.36129 * 140.88289 * 179.39307 * 20 19 18 26 26 C 1.46599 * 120.63068 * 51.74744 * 15 14 12 27 27 C 1.53955 * 110.58356 * 312.43856 * 26 15 14 28 28 C 1.45470 * 126.40930 * 179.97438 * 9 7 2 29 29 H 1.09001 * 108.78496 * 93.98948 * 28 9 7 30 30 H 0.97005 * 120.00073 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.92284 * 55.74595 * 10 9 7 32 32 H 1.09002 * 110.08348 * 294.53823 * 10 9 7 33 33 H 1.09002 * 110.95681 * 219.37508 * 11 10 9 34 34 H 1.09000 * 110.95677 * 95.65463 * 11 10 9 35 35 H 1.08999 * 110.00607 * 71.21398 * 14 12 11 36 36 H 1.09008 * 109.91740 * 309.77723 * 14 12 11 37 37 H 1.08008 * 126.02917 * 0.08688 * 19 18 16 38 38 H 1.08996 * 110.82941 * 133.40900 * 23 21 20 39 39 H 1.09002 * 110.82094 * 256.97340 * 23 21 20 40 40 H 1.08996 * 110.85365 * 93.37260 * 24 23 21 41 41 H 1.09003 * 110.85005 * 216.79881 * 24 23 21 42 42 H 1.09000 * 109.25404 * 72.71983 * 26 15 14 43 43 H 1.09002 * 109.25734 * 192.19452 * 26 15 14 44 44 H 1.09000 * 109.88065 * 170.50734 * 27 26 15 45 45 H 1.08996 * 109.88008 * 291.58763 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0016 10 6 -0.1470 -2.5533 0.0028 11 6 -0.4344 -4.0741 -0.1232 12 6 0.8674 -4.5897 -0.7579 13 1 0.8901 -4.3936 -1.8299 14 6 1.1992 -6.0377 -0.4451 15 7 2.5812 -6.2646 -0.9148 16 6 2.8465 -7.3038 -1.7310 17 8 3.9900 -7.5274 -2.0783 18 6 1.7481 -8.1710 -2.2038 19 6 1.8585 -9.1990 -3.1616 20 6 0.6282 -9.7615 -3.3172 21 7 -0.2227 -9.1097 -2.4833 22 7 0.4924 -8.1163 -1.8059 23 6 -1.5578 -9.7187 -2.6248 24 6 -1.2412 -11.0444 -3.3552 25 8 -0.0058 -10.7354 -4.0263 26 6 3.6657 -5.3667 -0.5066 27 6 3.2468 -3.8960 -0.6849 28 6 1.9076 -3.7213 0.0017 29 1 1.9830 -4.0712 1.0313 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5810 -2.0219 -0.8441 32 1 -0.5656 -2.1722 0.9342 33 1 -1.2865 -4.2569 -0.7780 34 1 -0.5947 -4.5231 0.8570 35 1 0.5117 -6.6999 -0.9713 36 1 1.1366 -6.2092 0.6296 37 1 2.7608 -9.4921 -3.6777 38 1 -2.0017 -9.9107 -1.6480 39 1 -2.2090 -9.0884 -3.2305 40 1 -1.1025 -11.8568 -2.6419 41 1 -2.0250 -11.2893 -4.0720 42 1 3.9067 -5.5472 0.5410 43 1 4.5462 -5.5655 -1.1175 44 1 3.9873 -3.2413 -0.2254 45 1 3.1524 -3.6635 -1.7456 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036738068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:06 Heat of formation + Delta-G solvation = 64.853474 kcal Electronic energy + Delta-G solvation = -29195.800449 eV Core-core repulsion = 25217.189113 eV Total energy + Delta-G solvation = -3978.611336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.38779 -41.54711 -39.98731 -39.20155 -36.81535 -34.43017 -34.36987 -33.40996 -31.51170 -30.89236 -29.91059 -29.55069 -26.93403 -25.87271 -24.77600 -23.81393 -22.96788 -22.50155 -21.79423 -21.23315 -20.19578 -18.74815 -18.47736 -18.02142 -17.59595 -17.14049 -16.85649 -16.63813 -16.37781 -16.02746 -15.88509 -15.65305 -15.21158 -15.01717 -14.76095 -14.46659 -14.33582 -14.12275 -13.92776 -13.76656 -13.48410 -13.19262 -13.09816 -13.09545 -12.72377 -12.61845 -12.23842 -12.09478 -11.99223 -11.82522 -11.78021 -11.56127 -11.47446 -11.37042 -10.72784 -10.62688 -10.28748 -9.78300 -9.66085 -8.86019 -7.83094 -5.16916 0.10140 0.77930 0.94091 1.45810 1.46281 1.56361 1.62513 2.08188 2.19518 2.50711 2.98320 3.30423 3.35585 3.47033 3.67109 3.84259 3.88312 3.95450 4.03922 4.09907 4.20359 4.27192 4.27515 4.37935 4.45717 4.49044 4.51314 4.65749 4.67074 4.68677 4.76728 4.84393 4.89330 4.93829 5.02810 5.10463 5.18236 5.27815 5.49471 5.53706 5.60366 5.67669 5.78310 5.80358 6.16276 6.21913 6.42394 6.92405 7.10945 7.80487 8.48817 9.28814 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.002957 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.273793 B = 9465.870081 C =10406.685008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.293 1.293 7 C -0.228 4.228 8 H 0.084 0.916 9 N -0.616 5.616 10 C 0.182 3.818 11 C -0.116 4.116 12 C -0.107 4.107 13 H 0.059 0.941 14 C 0.102 3.898 15 N -0.591 5.591 16 C 0.595 3.405 17 O -0.558 6.558 18 C 0.046 3.954 19 C -0.236 4.236 20 C 0.245 3.755 21 N -0.410 5.410 22 N -0.229 5.229 23 C 0.083 3.917 24 C 0.041 3.959 25 O -0.290 6.290 26 C 0.124 3.876 27 C -0.120 4.120 28 C 0.155 3.845 29 H 0.025 0.975 30 H 0.245 0.755 31 H 0.016 0.984 32 H 0.005 0.995 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.145 0.855 36 H 0.085 0.915 37 H 0.164 0.836 38 H 0.138 0.862 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.168 0.832 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.519 -25.806 -4.676 26.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.223 1.223 6 H -0.220 1.220 7 C -0.358 4.358 8 H 0.102 0.898 9 N -0.341 5.341 10 C 0.057 3.943 11 C -0.155 4.155 12 C -0.127 4.127 13 H 0.078 0.922 14 C -0.021 4.021 15 N -0.322 5.322 16 C 0.382 3.618 17 O -0.435 6.435 18 C -0.118 4.118 19 C -0.266 4.266 20 C 0.075 3.925 21 N -0.207 5.207 22 N -0.059 5.059 23 C -0.035 4.035 24 C -0.034 4.034 25 O -0.197 6.197 26 C 0.002 3.998 27 C -0.159 4.159 28 C 0.048 3.952 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.024 0.976 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.161 0.839 36 H 0.103 0.897 37 H 0.182 0.818 38 H 0.156 0.844 39 H 0.141 0.859 40 H 0.131 0.869 41 H 0.185 0.815 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.849 -25.235 -4.235 26.248 hybrid contribution 0.681 1.308 -0.431 1.536 sum -5.168 -23.927 -4.666 24.919 Atomic orbital electron populations 1.70164 1.06218 1.24962 1.58881 1.25595 0.96571 1.00836 1.03219 0.85074 0.78309 0.79870 0.76533 1.18972 1.22271 1.22034 1.19431 0.90968 0.83508 1.41848 0.89807 1.44518 1.02402 1.00749 1.86414 1.21310 0.83503 0.91858 0.97637 1.22545 0.96636 0.95220 1.01051 1.22356 0.96549 0.94802 0.99010 0.92223 1.22669 0.81551 0.96408 1.01483 1.48223 1.10816 1.26573 1.46575 1.17205 0.86384 0.80161 0.78091 1.90761 1.21581 1.72195 1.59008 1.21704 0.92037 0.98543 0.99561 1.20077 0.96056 1.02806 1.07668 1.20727 0.91609 0.89867 0.90322 1.51458 1.10505 1.25859 1.32876 1.77218 1.02944 1.07224 1.18532 1.23857 0.79830 0.93829 1.06018 1.24931 0.84184 0.95858 0.98417 1.87158 1.35452 1.51478 1.45611 1.21636 0.89297 0.87393 1.01464 1.21780 0.98091 0.95543 1.00484 1.20909 0.93031 0.85337 0.95881 0.95773 0.94599 0.96558 0.97629 0.90156 0.90100 0.83910 0.89692 0.81800 0.84391 0.85945 0.86939 0.81463 0.89659 0.89002 0.90652 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.02 10.44 21.65 0.23 -57.79 16 2 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 3 Si 0.97 46.57 29.55 68.60 2.03 48.59 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 7 C -0.23 -12.81 9.88 84.03 0.83 -11.98 16 8 H 0.08 4.49 7.21 -2.91 -0.02 4.47 16 9 N -0.62 -31.70 3.35 -669.96 -2.24 -33.94 16 10 C 0.18 9.01 5.45 86.84 0.47 9.49 16 11 C -0.12 -4.16 6.54 31.63 0.21 -3.95 16 12 C -0.11 -3.76 2.84 -10.13 -0.03 -3.78 16 13 H 0.06 2.34 8.12 -2.39 -0.02 2.32 16 14 C 0.10 2.93 5.76 85.76 0.49 3.42 16 15 N -0.59 -18.16 3.01 -822.35 -2.47 -20.64 16 16 C 0.60 19.16 7.67 86.75 0.67 19.82 16 17 O -0.56 -20.42 16.25 -3.96 -0.06 -20.48 16 18 C 0.05 1.30 6.85 42.31 0.29 1.59 16 19 C -0.24 -6.04 10.61 22.45 0.24 -5.81 16 20 C 0.24 5.09 8.32 83.60 0.70 5.79 16 21 N -0.41 -7.85 5.01 -453.33 -2.27 -10.12 16 22 N -0.23 -5.80 8.94 -48.52 -0.43 -6.23 16 23 C 0.08 0.55 8.10 86.76 0.70 1.25 16 24 C 0.04 0.14 8.08 72.54 0.59 0.72 16 25 O -0.29 -4.32 11.19 -95.02 -1.06 -5.38 16 26 C 0.12 3.79 6.32 86.68 0.55 4.34 16 27 C -0.12 -4.35 5.48 30.43 0.17 -4.18 16 28 C 0.16 6.31 2.55 45.50 0.12 6.43 16 29 H 0.02 1.00 7.95 -2.39 -0.02 0.98 16 30 H 0.24 14.52 8.31 -92.70 -0.77 13.75 16 31 H 0.02 0.91 7.21 -2.39 -0.02 0.89 16 32 H 0.01 0.30 7.77 -2.39 -0.02 0.28 16 33 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.08 2.56 8.12 -2.39 -0.02 2.55 16 35 H 0.14 3.94 3.68 -104.87 -0.39 3.55 16 36 H 0.08 2.24 8.08 -2.38 -0.02 2.22 16 37 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 38 H 0.14 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.17 -0.67 8.14 -2.39 -0.02 -0.69 16 42 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16 43 H 0.09 2.81 6.97 -2.39 -0.02 2.79 16 44 H 0.07 2.74 7.62 -2.39 -0.02 2.73 16 45 H 0.05 1.99 8.12 -2.39 -0.02 1.97 16 Total: -1.00 -77.90 355.08 0.79 -77.11 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.64 Total: 9.29 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 6.45 Total: 19.59 kcal Atomic # 7 Polarization: -121.53 SS G_CDS: -7.20 Total: -128.72 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -1.13 Total: -25.86 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -77.90 0.79 -77.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036738068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.964 kcal (2) G-P(sol) polarization free energy of solvation -77.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds