Wall clock time and date at job start Tue Mar 31 2020 16:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99451 * 2 1 4 4 H 1.48495 * 109.46836 * 269.99594 * 3 2 1 5 5 H 1.48496 * 109.47361 * 29.99982 * 3 2 1 6 6 H 1.48502 * 109.46836 * 149.99733 * 3 2 1 7 7 C 1.38800 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99903 * 191.01795 * 7 2 1 9 9 N 1.36935 * 120.00300 * 11.01401 * 7 2 1 10 10 C 1.44785 * 120.18372 * 202.54538 * 9 7 2 11 11 C 1.52365 * 111.74575 * 265.14473 * 10 9 7 12 12 C 1.51311 * 112.40923 * 284.33611 * 11 10 9 13 13 H 1.08999 * 111.31334 * 186.29167 * 12 11 10 14 14 C 1.54712 * 107.22724 * 308.33581 * 12 11 10 15 15 C 1.54233 * 104.37341 * 89.47310 * 14 12 11 16 16 C 1.51124 * 105.27817 * 11.32799 * 15 14 12 17 17 H 1.09001 * 106.48260 * 122.82137 * 16 15 14 18 18 C 1.49813 * 120.18092 * 22.57401 * 9 7 2 19 19 N 1.48057 * 109.76579 * 8.25813 * 16 15 14 20 20 C 1.34783 * 127.84097 * 155.04007 * 19 16 15 21 21 O 1.21565 * 119.99829 * 179.68201 * 20 19 16 22 22 C 1.47720 * 119.99993 * 359.67622 * 20 19 16 23 23 C 1.40942 * 125.97369 * 180.02562 * 22 20 19 24 24 C 1.36170 * 107.95036 * 180.33888 * 23 22 20 25 25 N 1.36289 * 107.24468 * 359.23613 * 24 23 22 26 26 N 1.31844 * 125.97393 * 0.03087 * 22 20 19 27 27 C 1.47421 * 107.80603 * 180.90175 * 25 24 23 28 28 C 1.54652 * 102.53024 * 15.40670 * 27 25 24 29 29 O 1.36126 * 140.88108 * 179.32824 * 24 23 22 30 30 H 0.97001 * 120.00241 * 0.02562 * 1 2 3 31 31 H 1.09003 * 108.93307 * 25.28568 * 10 9 7 32 32 H 1.09000 * 108.93174 * 143.96089 * 10 9 7 33 33 H 1.09003 * 108.31319 * 164.17957 * 11 10 9 34 34 H 1.08996 * 109.99252 * 45.64400 * 11 10 9 35 35 H 1.09007 * 110.45354 * 208.19146 * 14 12 11 36 36 H 1.09000 * 110.45478 * 330.74739 * 14 12 11 37 37 H 1.09005 * 110.28294 * 130.51474 * 15 14 12 38 38 H 1.09005 * 110.28406 * 252.51599 * 15 14 12 39 39 H 1.08997 * 109.54747 * 30.80161 * 18 9 7 40 40 H 1.09000 * 109.54526 * 270.53393 * 18 9 7 41 41 H 1.08001 * 126.02348 * 0.32067 * 23 22 20 42 42 H 1.08994 * 110.83344 * 257.08899 * 27 25 24 43 43 H 1.09003 * 110.83280 * 133.71457 * 27 25 24 44 44 H 1.08993 * 110.85269 * 93.23110 * 28 27 25 45 45 H 1.09004 * 110.85035 * 216.66299 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0754 -1.2105 0.1793 9 7 1.3446 -2.3772 -0.2255 10 6 1.9032 -3.6306 0.2361 11 6 2.7061 -4.3269 -0.8557 12 6 1.8213 -4.9793 -1.8954 13 1 2.4078 -5.5635 -2.6045 14 6 0.8036 -5.8661 -1.1396 15 6 -0.3882 -4.9280 -0.8599 16 6 -0.1269 -3.6934 -1.6914 17 1 -0.9936 -3.5685 -2.3405 18 6 0.0346 -2.3729 -0.9523 19 7 1.0293 -3.9278 -2.5861 20 6 1.3043 -3.3213 -3.7579 21 8 2.3055 -3.6228 -4.3781 22 6 0.3891 -2.2904 -4.2887 23 6 0.5527 -1.5799 -5.4949 24 6 -0.4955 -0.7198 -5.6208 25 7 -1.2988 -0.9001 -4.5347 26 7 -0.7235 -1.8739 -3.7169 27 6 -2.4502 0.0106 -4.6694 28 6 -2.3786 0.4240 -6.1579 29 8 -0.9842 0.2337 -6.4603 30 1 -0.4850 0.8400 -0.0004 31 1 2.5609 -3.4342 1.0828 32 1 1.0914 -4.2806 0.5627 33 1 3.3236 -5.0949 -0.3898 34 1 3.3596 -3.6098 -1.3525 35 1 0.4909 -6.7035 -1.7635 36 1 1.2326 -6.2261 -0.2045 37 1 -1.3216 -5.4019 -1.1638 38 1 -0.4242 -4.6678 0.1980 39 1 0.0168 -1.5503 -1.6671 40 1 -0.7790 -2.2536 -0.2369 41 1 1.3661 -1.6968 -6.1956 42 1 -2.3360 0.8785 -4.0201 43 1 -3.3836 -0.5105 -4.4564 44 1 -3.0011 -0.2268 -6.7717 45 1 -2.6676 1.4673 -6.2851 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039385984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:45 Heat of formation + Delta-G solvation = 92.981814 kcal Electronic energy + Delta-G solvation = -30893.179974 eV Core-core repulsion = 26915.788375 eV Total energy + Delta-G solvation = -3977.391599 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.08348 -40.22194 -38.55770 -37.37722 -34.48999 -33.24198 -32.57148 -31.19991 -30.95029 -29.56813 -28.68876 -26.95976 -25.72223 -24.41091 -23.81904 -22.70013 -21.34676 -20.87769 -20.74594 -19.21263 -18.30818 -17.48422 -17.07716 -16.34492 -16.15014 -15.54629 -15.48877 -15.15704 -14.97129 -14.46639 -14.41557 -13.94641 -13.66316 -13.26766 -13.07806 -12.94621 -12.88658 -12.68495 -12.35381 -12.31483 -12.05374 -11.60436 -11.48039 -11.28994 -11.14020 -10.88031 -10.79164 -10.65877 -10.44691 -10.28304 -10.04287 -9.98459 -9.67365 -9.64615 -9.22598 -8.94931 -8.46751 -8.26472 -7.98759 -6.63682 -5.68006 -3.07209 1.66742 2.03112 2.33417 2.82977 3.41622 3.44284 3.47310 3.49554 3.87523 3.93229 4.46915 4.55128 4.58893 4.75982 4.92698 5.01800 5.10216 5.23339 5.25206 5.42303 5.46616 5.49751 5.56254 5.69991 5.77661 5.79926 5.85944 6.02869 6.06675 6.11931 6.16526 6.32478 6.49814 6.54069 6.58669 6.65004 6.67552 6.86717 6.87269 7.02628 7.14224 7.55958 7.68336 7.78510 7.91257 8.12600 8.48945 8.63734 9.28618 9.96147 10.47310 11.40034 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009511 B = 0.006490 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.396881 B = 4313.512159 C = 6011.256105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.001 3.999 3 Si 0.897 3.103 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.240 4.240 8 H 0.064 0.936 9 N -0.594 5.594 10 C 0.146 3.854 11 C -0.157 4.157 12 C 0.142 3.858 13 H 0.084 0.916 14 C -0.126 4.126 15 C -0.119 4.119 16 C 0.104 3.896 17 H 0.067 0.933 18 C 0.182 3.818 19 N -0.580 5.580 20 C 0.629 3.371 21 O -0.543 6.543 22 C 0.058 3.942 23 C -0.212 4.212 24 C 0.220 3.780 25 N -0.411 5.411 26 N -0.184 5.184 27 C 0.100 3.900 28 C 0.043 3.957 29 O -0.281 6.281 30 H 0.248 0.752 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.161 0.839 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.091 0.909 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.132 -5.723 -8.403 13.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.196 4.196 3 Si 0.728 3.272 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.370 4.370 8 H 0.082 0.918 9 N -0.317 5.317 10 C 0.019 3.981 11 C -0.198 4.198 12 C 0.039 3.961 13 H 0.102 0.898 14 C -0.164 4.164 15 C -0.157 4.157 16 C 0.000 4.000 17 H 0.085 0.915 18 C 0.057 3.943 19 N -0.311 5.311 20 C 0.415 3.585 21 O -0.420 6.420 22 C -0.109 4.109 23 C -0.242 4.242 24 C 0.054 3.946 25 N -0.207 5.207 26 N -0.014 5.014 27 C -0.021 4.021 28 C -0.034 4.034 29 O -0.189 6.189 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.178 0.822 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.109 0.891 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.494 -5.630 -7.917 12.904 hybrid contribution 0.765 1.417 -0.632 1.730 sum -7.729 -4.213 -8.550 12.271 Atomic orbital electron populations 1.69997 1.04852 1.24692 1.56036 1.24887 0.95394 0.97756 1.01608 0.86350 0.79120 0.84193 0.77548 1.21800 1.21870 1.20522 1.19184 0.91125 0.84393 1.42286 0.91778 1.44242 1.22057 1.01355 1.64090 1.20450 0.95716 0.88587 0.93395 1.22300 0.99021 1.00024 0.98433 1.21721 0.92937 0.88118 0.93290 0.89755 1.22611 0.95969 0.97344 1.00483 1.21924 0.97690 0.94693 1.01398 1.21982 0.87820 0.97329 0.92844 0.91471 1.21574 0.87386 0.91133 0.94159 1.48707 1.25795 1.38069 1.18576 1.16064 0.83661 0.79351 0.79427 1.90750 1.27116 1.64605 1.59481 1.21804 0.95205 0.99482 0.94429 1.19942 1.01907 1.00652 1.01682 1.20825 0.95414 0.92719 0.85666 1.50782 1.20499 1.32275 1.17190 1.77895 1.09630 1.02055 1.11782 1.23174 0.88401 0.93108 0.97449 1.24403 0.81161 1.04642 0.93149 1.87099 1.24231 1.52366 1.55172 0.94147 0.93799 0.93724 0.92501 0.91777 0.91730 0.89933 0.91498 0.89520 0.89632 0.93679 0.82155 0.87623 0.87153 0.89130 0.85515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.25 10.63 55.49 0.59 -25.66 16 2 C 0.00 0.02 5.14 -17.43 -0.09 -0.07 16 3 Si 0.90 22.72 29.57 -169.99 -5.03 17.70 16 4 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.74 9.64 -15.06 -0.15 -6.88 16 8 H 0.06 1.81 7.85 -52.48 -0.41 1.40 16 9 N -0.59 -14.83 2.90 -172.70 -0.50 -15.33 16 10 C 0.15 3.00 5.35 -5.28 -0.03 2.98 16 11 C -0.16 -2.89 5.13 -27.91 -0.14 -3.03 16 12 C 0.14 2.45 3.77 -66.69 -0.25 2.20 16 13 H 0.08 1.42 8.02 -51.93 -0.42 1.00 16 14 C -0.13 -1.73 6.02 -25.19 -0.15 -1.88 16 15 C -0.12 -1.82 5.80 -27.03 -0.16 -1.98 16 16 C 0.10 2.01 1.97 -68.44 -0.14 1.87 16 17 H 0.07 1.29 6.37 -51.93 -0.33 0.96 16 18 C 0.18 4.32 4.25 -2.61 -0.01 4.31 16 19 N -0.58 -11.57 2.62 -158.40 -0.41 -11.99 16 20 C 0.63 13.65 7.89 -12.38 -0.10 13.56 16 21 O -0.54 -12.62 17.26 5.31 0.09 -12.52 16 22 C 0.06 1.20 6.80 -82.97 -0.56 0.63 16 23 C -0.21 -3.96 10.60 -39.30 -0.42 -4.37 16 24 C 0.22 3.71 8.33 -16.31 -0.14 3.57 16 25 N -0.41 -6.93 5.03 -59.51 -0.30 -7.23 16 26 N -0.18 -3.70 8.10 33.32 0.27 -3.43 16 27 C 0.10 1.08 8.08 -2.67 -0.02 1.06 16 28 C 0.04 0.35 8.08 38.03 0.31 0.66 16 29 O -0.28 -3.85 11.19 -20.14 -0.23 -4.07 16 30 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.04 0.92 7.96 -51.93 -0.41 0.50 16 32 H 0.04 0.83 3.93 -51.93 -0.20 0.62 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.00 7.39 -51.93 -0.38 0.62 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.37 6.17 -51.93 -0.32 1.05 16 39 H 0.09 2.28 4.96 -51.93 -0.26 2.02 16 40 H 0.05 1.17 7.66 -51.93 -0.40 0.77 16 41 H 0.16 2.75 8.06 -52.49 -0.42 2.33 16 42 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -35.20 347.31 -8.40 -43.60 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.08 Total: 1.07 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: -2.04 Total: 12.63 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -0.35 Total: -63.64 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.13 Total: -16.60 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.20 -8.40 -43.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039385984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.584 kcal (2) G-P(sol) polarization free energy of solvation -35.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds