Wall clock time and date at job start Tue Mar 31 2020 16:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99451 * 2 1 4 4 H 1.48495 * 109.46836 * 269.99594 * 3 2 1 5 5 H 1.48496 * 109.47361 * 29.99982 * 3 2 1 6 6 H 1.48502 * 109.46836 * 149.99733 * 3 2 1 7 7 C 1.38800 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99903 * 191.01795 * 7 2 1 9 9 N 1.36935 * 120.00300 * 11.01401 * 7 2 1 10 10 C 1.44785 * 120.18372 * 202.54538 * 9 7 2 11 11 C 1.52365 * 111.74575 * 265.14473 * 10 9 7 12 12 C 1.51311 * 112.40923 * 284.33611 * 11 10 9 13 13 H 1.08999 * 111.31334 * 186.29167 * 12 11 10 14 14 C 1.54712 * 107.22724 * 308.33581 * 12 11 10 15 15 C 1.54233 * 104.37341 * 89.47310 * 14 12 11 16 16 C 1.51124 * 105.27817 * 11.32799 * 15 14 12 17 17 H 1.09001 * 106.48260 * 122.82137 * 16 15 14 18 18 C 1.49813 * 120.18092 * 22.57401 * 9 7 2 19 19 N 1.48057 * 109.76579 * 8.25813 * 16 15 14 20 20 C 1.34783 * 127.84097 * 155.04007 * 19 16 15 21 21 O 1.21565 * 119.99829 * 179.68201 * 20 19 16 22 22 C 1.47720 * 119.99993 * 359.67622 * 20 19 16 23 23 C 1.40942 * 125.97369 * 180.02562 * 22 20 19 24 24 C 1.36170 * 107.95036 * 180.33888 * 23 22 20 25 25 N 1.36289 * 107.24468 * 359.23613 * 24 23 22 26 26 N 1.31844 * 125.97393 * 0.03087 * 22 20 19 27 27 C 1.47421 * 107.80603 * 180.90175 * 25 24 23 28 28 C 1.54652 * 102.53024 * 15.40670 * 27 25 24 29 29 O 1.36126 * 140.88108 * 179.32824 * 24 23 22 30 30 H 0.97001 * 120.00241 * 0.02562 * 1 2 3 31 31 H 1.09003 * 108.93307 * 25.28568 * 10 9 7 32 32 H 1.09000 * 108.93174 * 143.96089 * 10 9 7 33 33 H 1.09003 * 108.31319 * 164.17957 * 11 10 9 34 34 H 1.08996 * 109.99252 * 45.64400 * 11 10 9 35 35 H 1.09007 * 110.45354 * 208.19146 * 14 12 11 36 36 H 1.09000 * 110.45478 * 330.74739 * 14 12 11 37 37 H 1.09005 * 110.28294 * 130.51474 * 15 14 12 38 38 H 1.09005 * 110.28406 * 252.51599 * 15 14 12 39 39 H 1.08997 * 109.54747 * 30.80161 * 18 9 7 40 40 H 1.09000 * 109.54526 * 270.53393 * 18 9 7 41 41 H 1.08001 * 126.02348 * 0.32067 * 23 22 20 42 42 H 1.08994 * 110.83344 * 257.08899 * 27 25 24 43 43 H 1.09003 * 110.83280 * 133.71457 * 27 25 24 44 44 H 1.08993 * 110.85269 * 93.23110 * 28 27 25 45 45 H 1.09004 * 110.85035 * 216.66299 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0754 -1.2105 0.1793 9 7 1.3446 -2.3772 -0.2255 10 6 1.9032 -3.6306 0.2361 11 6 2.7061 -4.3269 -0.8557 12 6 1.8213 -4.9793 -1.8954 13 1 2.4078 -5.5635 -2.6045 14 6 0.8036 -5.8661 -1.1396 15 6 -0.3882 -4.9280 -0.8599 16 6 -0.1269 -3.6934 -1.6914 17 1 -0.9936 -3.5685 -2.3405 18 6 0.0346 -2.3729 -0.9523 19 7 1.0293 -3.9278 -2.5861 20 6 1.3043 -3.3213 -3.7579 21 8 2.3055 -3.6228 -4.3781 22 6 0.3891 -2.2904 -4.2887 23 6 0.5527 -1.5799 -5.4949 24 6 -0.4955 -0.7198 -5.6208 25 7 -1.2988 -0.9001 -4.5347 26 7 -0.7235 -1.8739 -3.7169 27 6 -2.4502 0.0106 -4.6694 28 6 -2.3786 0.4240 -6.1579 29 8 -0.9842 0.2337 -6.4603 30 1 -0.4850 0.8400 -0.0004 31 1 2.5609 -3.4342 1.0828 32 1 1.0914 -4.2806 0.5627 33 1 3.3236 -5.0949 -0.3898 34 1 3.3596 -3.6098 -1.3525 35 1 0.4909 -6.7035 -1.7635 36 1 1.2326 -6.2261 -0.2045 37 1 -1.3216 -5.4019 -1.1638 38 1 -0.4242 -4.6678 0.1980 39 1 0.0168 -1.5503 -1.6671 40 1 -0.7790 -2.2536 -0.2369 41 1 1.3661 -1.6968 -6.1956 42 1 -2.3360 0.8785 -4.0201 43 1 -3.3836 -0.5105 -4.4564 44 1 -3.0011 -0.2268 -6.7717 45 1 -2.6676 1.4673 -6.2851 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039385984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:44 Heat of formation + Delta-G solvation = 67.457863 kcal Electronic energy + Delta-G solvation = -30894.286776 eV Core-core repulsion = 26915.788375 eV Total energy + Delta-G solvation = -3978.498401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.32233 -41.70466 -39.85198 -38.92275 -36.37016 -34.51490 -34.01827 -32.90821 -32.61352 -30.82645 -29.92050 -28.74438 -27.27130 -25.81861 -25.53698 -23.89591 -22.65762 -22.30623 -22.23259 -20.84444 -19.74591 -18.93360 -18.32038 -18.06394 -17.42547 -17.07383 -16.92350 -16.73174 -16.24383 -16.13190 -15.77246 -15.52349 -15.06683 -14.76465 -14.53441 -14.46631 -14.31464 -13.96937 -13.95821 -13.61397 -13.31078 -13.15180 -13.05916 -12.87354 -12.76111 -12.39259 -12.35632 -12.25950 -12.06822 -11.87789 -11.79173 -11.56401 -11.46461 -11.30226 -10.74983 -10.56359 -10.25629 -9.63909 -9.57002 -8.66939 -7.82572 -5.22595 0.22174 0.86549 0.93966 1.35264 1.38432 1.44814 1.63240 2.10177 2.32240 2.47549 3.01779 3.27860 3.35131 3.58627 3.66843 3.81465 3.81711 3.91769 4.07900 4.13915 4.19204 4.24119 4.35690 4.41790 4.46837 4.52732 4.63430 4.67143 4.71482 4.73966 4.87390 4.95569 5.04485 5.11991 5.14172 5.19198 5.23749 5.31756 5.46396 5.57650 5.59375 5.74372 5.82618 5.88265 6.36399 6.40193 6.53319 7.03657 7.17973 7.94224 8.40233 9.22050 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009511 B = 0.006490 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.396881 B = 4313.512159 C = 6011.256105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.046 4.046 3 Si 0.948 3.052 4 H -0.301 1.301 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.250 4.250 8 H 0.054 0.946 9 N -0.610 5.610 10 C 0.141 3.859 11 C -0.146 4.146 12 C 0.130 3.870 13 H 0.090 0.910 14 C -0.110 4.110 15 C -0.115 4.115 16 C 0.112 3.888 17 H 0.065 0.935 18 C 0.195 3.805 19 N -0.582 5.582 20 C 0.617 3.383 21 O -0.572 6.572 22 C 0.033 3.967 23 C -0.240 4.240 24 C 0.233 3.767 25 N -0.412 5.412 26 N -0.208 5.208 27 C 0.084 3.916 28 C 0.047 3.953 29 O -0.289 6.289 30 H 0.244 0.756 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.020 0.980 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.018 0.982 41 H 0.163 0.837 42 H 0.105 0.895 43 H 0.139 0.861 44 H 0.121 0.879 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.646 -6.837 -8.588 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.241 4.241 3 Si 0.778 3.222 4 H -0.229 1.229 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.381 4.381 8 H 0.072 0.928 9 N -0.334 5.334 10 C 0.014 3.986 11 C -0.187 4.187 12 C 0.029 3.971 13 H 0.108 0.892 14 C -0.148 4.148 15 C -0.153 4.153 16 C 0.007 3.993 17 H 0.084 0.916 18 C 0.070 3.930 19 N -0.312 5.312 20 C 0.404 3.596 21 O -0.451 6.451 22 C -0.133 4.133 23 C -0.270 4.270 24 C 0.065 3.935 25 N -0.210 5.210 26 N -0.039 5.039 27 C -0.034 4.034 28 C -0.028 4.028 29 O -0.196 6.196 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.039 0.961 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.181 0.819 42 H 0.123 0.877 43 H 0.157 0.843 44 H 0.139 0.861 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.024 -6.765 -8.078 14.543 hybrid contribution 1.159 1.869 -0.603 2.281 sum -8.865 -4.896 -8.681 13.339 Atomic orbital electron populations 1.70141 1.05567 1.24722 1.56893 1.25469 0.96227 1.00127 1.02312 0.85538 0.78549 0.81327 0.76751 1.22946 1.21308 1.19689 1.19377 0.90986 0.86086 1.41664 0.92826 1.44480 1.22319 1.01976 1.64621 1.20687 0.96583 0.87511 0.93777 1.22155 0.98681 0.99891 0.97944 1.22031 0.93902 0.88050 0.93162 0.89170 1.22620 0.93791 0.96774 1.01619 1.21944 0.99979 0.93060 1.00288 1.21860 0.87524 0.97174 0.92696 0.91649 1.21212 0.85968 0.92940 0.92834 1.48855 1.26230 1.38096 1.18051 1.16400 0.83622 0.79599 0.79979 1.90700 1.28245 1.65692 1.60491 1.21800 0.95839 1.00246 0.95415 1.20056 1.03195 1.02029 1.01743 1.20795 0.94585 0.92118 0.86031 1.51217 1.21708 1.31698 1.16418 1.77741 1.09871 1.03464 1.12795 1.23757 0.87819 0.92382 0.99465 1.24921 0.78632 1.07883 0.91365 1.87110 1.27202 1.50899 1.54395 0.94654 0.94562 0.90831 0.88583 0.96140 0.88895 0.87285 0.88435 0.89797 0.92903 0.96435 0.81933 0.87695 0.84306 0.86139 0.81474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.93 10.63 21.65 0.23 -54.70 16 2 C -0.05 -2.69 5.14 84.86 0.44 -2.25 16 3 Si 0.95 47.84 29.57 68.60 2.03 49.87 16 4 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 7 C -0.25 -14.47 9.64 84.03 0.81 -13.66 16 8 H 0.05 3.13 7.85 -2.91 -0.02 3.11 16 9 N -0.61 -31.08 2.90 -700.31 -2.03 -33.11 16 10 C 0.14 5.68 5.35 86.49 0.46 6.14 16 11 C -0.15 -5.24 5.13 29.83 0.15 -5.09 16 12 C 0.13 4.30 3.77 44.61 0.17 4.46 16 13 H 0.09 2.89 8.02 -2.39 -0.02 2.87 16 14 C -0.11 -2.58 6.02 31.60 0.19 -2.39 16 15 C -0.11 -3.18 5.80 30.40 0.18 -3.00 16 16 C 0.11 4.25 1.97 43.81 0.09 4.34 16 17 H 0.07 2.52 6.37 -2.39 -0.02 2.51 16 18 C 0.19 9.50 4.25 85.46 0.36 9.86 16 19 N -0.58 -23.34 2.62 -773.32 -2.02 -25.36 16 20 C 0.62 27.84 7.89 86.75 0.68 28.53 16 21 O -0.57 -27.74 17.26 -3.92 -0.07 -27.81 16 22 C 0.03 1.41 6.80 42.31 0.29 1.70 16 23 C -0.24 -9.36 10.60 22.45 0.24 -9.12 16 24 C 0.23 7.86 8.33 83.52 0.70 8.56 16 25 N -0.41 -13.91 5.03 -452.68 -2.28 -16.19 16 26 N -0.21 -8.61 8.10 -48.51 -0.39 -9.01 16 27 C 0.08 1.68 8.08 86.77 0.70 2.39 16 28 C 0.05 0.62 8.08 72.54 0.59 1.21 16 29 O -0.29 -7.44 11.19 -94.98 -1.06 -8.51 16 30 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 31 H 0.04 1.49 7.96 -2.39 -0.02 1.48 16 32 H 0.07 2.56 3.93 -2.39 -0.01 2.55 16 33 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.11 2.05 7.39 -2.39 -0.02 2.03 16 37 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 38 H 0.08 2.40 6.17 -2.38 -0.01 2.38 16 39 H 0.05 2.93 4.96 -2.39 -0.01 2.92 16 40 H 0.02 0.94 7.66 -2.39 -0.02 0.92 16 41 H 0.16 5.95 8.06 -2.91 -0.02 5.93 16 42 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.17 0.91 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -82.08 347.31 1.46 -80.62 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.02 Total: 12.52 kcal Atomic # 6 Polarization: 25.63 SS G_CDS: 6.04 Total: 31.67 kcal Atomic # 7 Polarization: -131.88 SS G_CDS: -6.50 Total: -138.37 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.13 Total: -36.32 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.87 kcal Total: -82.08 1.46 -80.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039385984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.078 kcal (2) G-P(sol) polarization free energy of solvation -82.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds