Wall clock time and date at job start Tue Mar 31 2020 16:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 119.99984 * 2 1 4 4 H 1.48497 * 109.47312 * 270.00113 * 3 2 1 5 5 H 1.48500 * 109.47344 * 30.00195 * 3 2 1 6 6 H 1.48500 * 109.47258 * 149.99936 * 3 2 1 7 7 C 1.38815 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00237 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99491 * 0.02562 * 7 2 1 10 10 C 1.48157 * 126.40029 * 0.02562 * 9 7 2 11 11 C 1.55304 * 107.21088 * 184.88039 * 10 9 7 12 12 C 1.54209 * 101.57992 * 22.50778 * 11 10 9 13 13 H 1.09002 * 111.73050 * 78.82635 * 12 11 10 14 14 C 1.51982 * 114.95580 * 206.50610 * 12 11 10 15 15 C 1.53889 * 107.28326 * 175.44809 * 14 12 11 16 16 N 1.46592 * 110.71668 * 308.19258 * 15 14 12 17 17 C 1.34777 * 119.75370 * 227.72092 * 16 15 14 18 18 O 1.21567 * 119.99646 * 356.71934 * 17 16 15 19 19 C 1.47714 * 119.99987 * 176.72722 * 17 16 15 20 20 C 1.40945 * 125.97606 * 186.91603 * 19 17 16 21 21 C 1.36168 * 107.95516 * 180.11466 * 20 19 17 22 22 N 1.35805 * 107.31051 * 359.61708 * 21 20 19 23 23 N 1.31835 * 125.97490 * 6.60687 * 19 17 16 24 24 C 1.47429 * 108.07005 * 180.77187 * 22 21 20 25 25 C 1.54649 * 102.35693 * 15.19170 * 24 22 21 26 26 O 1.36117 * 140.88520 * 179.12789 * 21 20 19 27 27 C 1.47791 * 120.49520 * 47.73677 * 16 15 14 28 28 C 1.45504 * 126.39242 * 180.02562 * 9 7 2 29 29 H 1.09004 * 109.57262 * 265.88506 * 28 9 7 30 30 H 0.97003 * 120.00191 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.91491 * 304.32742 * 10 9 7 32 32 H 1.09003 * 109.91731 * 65.43145 * 10 9 7 33 33 H 1.08999 * 110.95812 * 140.68191 * 11 10 9 34 34 H 1.09001 * 110.95330 * 264.41759 * 11 10 9 35 35 H 1.08998 * 109.89156 * 56.00657 * 14 12 11 36 36 H 1.08998 * 109.95795 * 294.92880 * 14 12 11 37 37 H 1.09006 * 109.22742 * 187.87463 * 15 14 12 38 38 H 1.09000 * 109.19678 * 68.49293 * 15 14 12 39 39 H 1.08008 * 126.02058 * 0.09584 * 20 19 17 40 40 H 1.09005 * 110.82692 * 133.40642 * 24 22 21 41 41 H 1.09000 * 110.82869 * 256.97233 * 24 22 21 42 42 H 1.08998 * 110.85455 * 93.36911 * 25 24 22 43 43 H 1.09004 * 110.85044 * 216.79457 * 25 24 22 44 44 H 1.09001 * 110.06836 * 189.52835 * 27 16 15 45 45 H 1.09002 * 110.15891 * 68.01424 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1468 -2.5531 -0.0005 11 6 -0.4389 -4.0732 0.1261 12 6 0.8676 -4.5873 0.7639 13 1 0.8984 -4.3903 1.8355 14 6 1.1972 -6.0411 0.4673 15 6 2.5765 -6.3322 1.0843 16 7 3.5598 -5.3355 0.6499 17 6 4.7635 -5.7371 0.1958 18 8 5.0529 -6.9178 0.2034 19 6 5.7311 -4.7427 -0.3109 20 6 6.9608 -5.0286 -0.9375 21 6 7.5564 -3.8453 -1.2528 22 7 6.7238 -2.8527 -0.8455 23 7 5.5929 -3.4325 -0.2612 24 6 7.3448 -1.5624 -1.1961 25 6 8.4429 -1.9853 -2.1996 26 8 8.6900 -3.3524 -1.8226 27 6 3.2411 -3.8935 0.7065 28 6 1.9081 -3.7213 0.0016 29 1 1.9876 -4.0859 -1.0226 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5808 -2.0198 0.8452 32 1 -0.5626 -2.1715 -0.9331 33 1 -1.2922 -4.2531 0.7800 34 1 -0.5991 -4.5223 -0.8540 35 1 1.2316 -6.2011 -0.6103 36 1 0.4458 -6.6916 0.9149 37 1 2.9076 -7.3228 0.7722 38 1 2.4957 -6.3068 2.1710 39 1 7.3605 -6.0128 -1.1328 40 1 6.6206 -0.9000 -1.6705 41 1 7.7839 -1.0918 -0.3165 42 1 8.0761 -1.9256 -3.2242 43 1 9.3385 -1.3769 -2.0738 44 1 4.0127 -3.3195 0.1933 45 1 3.1604 -3.5670 1.7434 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042096347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:47 Heat of formation + Delta-G solvation = 89.251143 kcal Electronic energy + Delta-G solvation = -29820.950355 eV Core-core repulsion = 25843.396982 eV Total energy + Delta-G solvation = -3977.553373 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.37980 -40.19080 -38.68652 -37.92185 -35.19463 -33.48101 -32.98292 -31.48928 -30.04647 -29.25518 -28.87718 -28.35478 -25.32078 -24.27600 -23.71303 -22.57332 -21.74138 -21.31520 -20.07801 -19.68966 -18.88454 -17.66642 -17.16916 -16.73164 -16.45046 -15.82515 -15.38148 -15.24792 -15.07420 -14.73768 -14.38800 -14.21705 -13.88271 -13.67495 -13.52042 -13.25021 -13.14132 -12.90932 -12.55239 -12.46160 -12.06311 -11.89678 -11.61181 -11.46470 -11.28880 -10.93940 -10.90472 -10.76174 -10.61035 -10.18320 -10.08615 -9.87876 -9.75101 -9.61624 -9.27754 -9.14160 -8.63972 -8.59043 -8.38886 -6.85099 -5.72662 -3.05558 1.31642 1.75400 2.05923 2.60982 3.22221 3.34302 3.38393 3.42081 3.46901 3.75523 4.30955 4.35259 4.47743 4.62673 4.85659 4.97637 5.05752 5.07687 5.22218 5.24585 5.27903 5.43794 5.51057 5.63367 5.67406 5.74051 5.84202 5.87202 5.96058 6.07884 6.16675 6.18935 6.21154 6.27934 6.48616 6.59893 6.67475 6.67659 6.75301 6.98861 7.09071 7.40261 7.56375 7.61852 7.65594 7.81371 8.22296 8.27083 9.18584 9.81542 10.49719 11.39926 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008996 B = 0.005601 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.584059 B = 4997.600531 C = 7864.045775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.907 3.093 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.221 4.221 8 H 0.080 0.920 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.137 4.137 12 C -0.115 4.115 13 H 0.077 0.923 14 C -0.119 4.119 15 C 0.114 3.886 16 N -0.589 5.589 17 C 0.599 3.401 18 O -0.537 6.537 19 C 0.055 3.945 20 C -0.214 4.214 21 C 0.232 3.768 22 N -0.411 5.411 23 N -0.200 5.200 24 C 0.093 3.907 25 C 0.042 3.958 26 O -0.282 6.282 27 C 0.080 3.920 28 C 0.158 3.842 29 H 0.022 0.978 30 H 0.252 0.748 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.164 0.836 40 H 0.117 0.883 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.129 0.871 44 H 0.138 0.862 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.950 -6.564 -1.977 13.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.350 4.350 8 H 0.097 0.903 9 N -0.316 5.316 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.135 4.135 13 H 0.095 0.905 14 C -0.158 4.158 15 C -0.009 4.009 16 N -0.321 5.321 17 C 0.384 3.616 18 O -0.413 6.413 19 C -0.111 4.111 20 C -0.244 4.244 21 C 0.064 3.936 22 N -0.206 5.206 23 N -0.029 5.029 24 C -0.028 4.028 25 C -0.034 4.034 26 O -0.189 6.189 27 C -0.044 4.044 28 C 0.049 3.951 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.181 0.819 40 H 0.135 0.865 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.147 0.853 44 H 0.154 0.846 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.505 -5.923 -1.629 13.042 hybrid contribution 0.803 0.781 -0.299 1.159 sum 12.308 -5.143 -1.928 13.477 Atomic orbital electron populations 1.69938 1.04825 1.24923 1.57221 1.24771 0.95647 0.97485 1.02555 0.86187 0.78671 0.83922 0.77404 1.21803 1.21694 1.20778 1.19034 0.90385 0.82227 1.43322 0.90266 1.44157 1.01635 0.99185 1.86598 1.21537 0.83665 0.88594 1.00948 1.22803 0.95981 0.99542 0.99244 1.22402 0.97316 0.93587 1.00162 0.90474 1.21814 0.95347 0.97289 1.01302 1.21637 0.88190 0.92200 0.98836 1.48162 1.13334 1.08794 1.61772 1.16952 0.80851 0.86204 0.77544 1.90759 1.77221 1.16364 1.56965 1.21963 0.95959 0.91320 1.01837 1.19933 0.95357 0.95919 1.13217 1.20798 0.84364 0.91588 0.96883 1.51144 1.15751 1.06625 1.47070 1.77754 1.00010 1.06800 1.18310 1.23311 0.95294 0.84016 1.00200 1.24453 0.99505 0.80318 0.99154 1.87109 1.28637 1.27425 1.75693 1.22886 1.01035 0.78038 1.02406 1.20952 0.91039 0.87534 0.95547 0.96036 0.93807 0.92660 0.94494 0.92202 0.92546 0.91448 0.90747 0.89232 0.91621 0.81889 0.86505 0.87567 0.88757 0.85276 0.84624 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.58 10.43 55.49 0.58 -26.00 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.49 29.55 -169.99 -5.02 16.46 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.22 -5.96 9.88 -15.06 -0.15 -6.11 16 8 H 0.08 2.08 7.41 -52.49 -0.39 1.69 16 9 N -0.59 -14.69 3.35 -162.92 -0.55 -15.24 16 10 C 0.18 4.23 5.44 -1.91 -0.01 4.22 16 11 C -0.14 -2.54 6.58 -24.88 -0.16 -2.70 16 12 C -0.11 -2.02 2.63 -89.25 -0.23 -2.25 16 13 H 0.08 1.39 8.13 -51.93 -0.42 0.97 16 14 C -0.12 -1.70 5.73 -26.79 -0.15 -1.86 16 15 C 0.11 1.66 6.32 -3.53 -0.02 1.64 16 16 N -0.59 -10.07 3.01 -173.91 -0.52 -10.59 16 17 C 0.60 10.63 7.68 -12.39 -0.10 10.54 16 18 O -0.54 -10.15 16.26 5.31 0.09 -10.06 16 19 C 0.06 0.94 6.85 -82.97 -0.57 0.37 16 20 C -0.21 -3.24 10.61 -39.30 -0.42 -3.66 16 21 C 0.23 3.22 8.32 -16.54 -0.14 3.08 16 22 N -0.41 -5.95 5.01 -59.63 -0.30 -6.25 16 23 N -0.20 -3.49 8.94 33.31 0.30 -3.20 16 24 C 0.09 0.86 8.10 -2.67 -0.02 0.84 16 25 C 0.04 0.29 8.08 38.02 0.31 0.59 16 26 O -0.28 -3.15 11.19 -20.11 -0.23 -3.38 16 27 C 0.08 1.52 5.51 -3.96 -0.02 1.50 16 28 C 0.16 3.28 2.77 -67.84 -0.19 3.09 16 29 H 0.02 0.49 7.90 -51.93 -0.41 0.08 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.06 1.46 7.21 -51.93 -0.37 1.08 16 32 H 0.04 0.97 7.76 -51.93 -0.40 0.57 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 35 H 0.07 1.00 7.97 -51.93 -0.41 0.59 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.28 6.98 -51.93 -0.36 0.92 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.16 2.21 8.06 -52.48 -0.42 1.79 16 40 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.14 2.73 3.45 -128.04 -0.44 2.29 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 355.47 15.07 5.36 5.36 Total: -1.00 -33.34 355.47 -8.85 -42.19 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.58 Total: 1.75 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -1.97 Total: 8.96 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.49 Total: -61.27 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.14 Total: -13.44 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.34 -8.85 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042096347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.440 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds