Wall clock time and date at job start Tue Mar 31 2020 16:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 119.99984 * 2 1 4 4 H 1.48497 * 109.47312 * 270.00113 * 3 2 1 5 5 H 1.48500 * 109.47344 * 30.00195 * 3 2 1 6 6 H 1.48500 * 109.47258 * 149.99936 * 3 2 1 7 7 C 1.38815 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00237 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99491 * 0.02562 * 7 2 1 10 10 C 1.48157 * 126.40029 * 0.02562 * 9 7 2 11 11 C 1.55304 * 107.21088 * 184.88039 * 10 9 7 12 12 C 1.54209 * 101.57992 * 22.50778 * 11 10 9 13 13 H 1.09002 * 111.73050 * 78.82635 * 12 11 10 14 14 C 1.51982 * 114.95580 * 206.50610 * 12 11 10 15 15 C 1.53889 * 107.28326 * 175.44809 * 14 12 11 16 16 N 1.46592 * 110.71668 * 308.19258 * 15 14 12 17 17 C 1.34777 * 119.75370 * 227.72092 * 16 15 14 18 18 O 1.21567 * 119.99646 * 356.71934 * 17 16 15 19 19 C 1.47714 * 119.99987 * 176.72722 * 17 16 15 20 20 C 1.40945 * 125.97606 * 186.91603 * 19 17 16 21 21 C 1.36168 * 107.95516 * 180.11466 * 20 19 17 22 22 N 1.35805 * 107.31051 * 359.61708 * 21 20 19 23 23 N 1.31835 * 125.97490 * 6.60687 * 19 17 16 24 24 C 1.47429 * 108.07005 * 180.77187 * 22 21 20 25 25 C 1.54649 * 102.35693 * 15.19170 * 24 22 21 26 26 O 1.36117 * 140.88520 * 179.12789 * 21 20 19 27 27 C 1.47791 * 120.49520 * 47.73677 * 16 15 14 28 28 C 1.45504 * 126.39242 * 180.02562 * 9 7 2 29 29 H 1.09004 * 109.57262 * 265.88506 * 28 9 7 30 30 H 0.97003 * 120.00191 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.91491 * 304.32742 * 10 9 7 32 32 H 1.09003 * 109.91731 * 65.43145 * 10 9 7 33 33 H 1.08999 * 110.95812 * 140.68191 * 11 10 9 34 34 H 1.09001 * 110.95330 * 264.41759 * 11 10 9 35 35 H 1.08998 * 109.89156 * 56.00657 * 14 12 11 36 36 H 1.08998 * 109.95795 * 294.92880 * 14 12 11 37 37 H 1.09006 * 109.22742 * 187.87463 * 15 14 12 38 38 H 1.09000 * 109.19678 * 68.49293 * 15 14 12 39 39 H 1.08008 * 126.02058 * 0.09584 * 20 19 17 40 40 H 1.09005 * 110.82692 * 133.40642 * 24 22 21 41 41 H 1.09000 * 110.82869 * 256.97233 * 24 22 21 42 42 H 1.08998 * 110.85455 * 93.36911 * 25 24 22 43 43 H 1.09004 * 110.85044 * 216.79457 * 25 24 22 44 44 H 1.09001 * 110.06836 * 189.52835 * 27 16 15 45 45 H 1.09002 * 110.15891 * 68.01424 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1468 -2.5531 -0.0005 11 6 -0.4389 -4.0732 0.1261 12 6 0.8676 -4.5873 0.7639 13 1 0.8984 -4.3903 1.8355 14 6 1.1972 -6.0411 0.4673 15 6 2.5765 -6.3322 1.0843 16 7 3.5598 -5.3355 0.6499 17 6 4.7635 -5.7371 0.1958 18 8 5.0529 -6.9178 0.2034 19 6 5.7311 -4.7427 -0.3109 20 6 6.9608 -5.0286 -0.9375 21 6 7.5564 -3.8453 -1.2528 22 7 6.7238 -2.8527 -0.8455 23 7 5.5929 -3.4325 -0.2612 24 6 7.3448 -1.5624 -1.1961 25 6 8.4429 -1.9853 -2.1996 26 8 8.6900 -3.3524 -1.8226 27 6 3.2411 -3.8935 0.7065 28 6 1.9081 -3.7213 0.0016 29 1 1.9876 -4.0859 -1.0226 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5808 -2.0198 0.8452 32 1 -0.5626 -2.1715 -0.9331 33 1 -1.2922 -4.2531 0.7800 34 1 -0.5991 -4.5223 -0.8540 35 1 1.2316 -6.2011 -0.6103 36 1 0.4458 -6.6916 0.9149 37 1 2.9076 -7.3228 0.7722 38 1 2.4957 -6.3068 2.1710 39 1 7.3605 -6.0128 -1.1328 40 1 6.6206 -0.9000 -1.6705 41 1 7.7839 -1.0918 -0.3165 42 1 8.0761 -1.9256 -3.2242 43 1 9.3385 -1.3769 -2.0738 44 1 4.0127 -3.3195 0.1933 45 1 3.1604 -3.5670 1.7434 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042096347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:46 Heat of formation + Delta-G solvation = 65.805208 kcal Electronic energy + Delta-G solvation = -29821.967047 eV Core-core repulsion = 25843.396982 eV Total energy + Delta-G solvation = -3978.570065 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.41203 -41.52987 -39.96788 -39.21764 -36.76245 -34.81588 -34.28905 -33.10536 -31.29079 -30.75893 -30.05324 -29.86175 -26.78069 -25.93154 -24.91979 -23.75635 -22.94886 -22.46738 -21.75795 -21.25551 -20.18468 -18.67035 -18.61155 -18.19551 -17.51667 -17.09716 -16.84338 -16.54742 -16.40356 -16.06419 -15.83857 -15.62353 -15.24576 -14.96044 -14.81643 -14.63929 -14.41189 -13.96744 -13.88458 -13.75807 -13.48365 -13.16286 -13.13470 -13.09151 -12.73176 -12.50309 -12.34105 -12.20416 -12.06287 -11.92924 -11.67454 -11.52152 -11.41602 -11.28605 -10.71878 -10.57680 -10.32357 -9.77482 -9.68153 -8.88096 -7.81873 -5.16822 0.10123 0.76202 0.94210 1.43175 1.46149 1.54571 1.59834 2.07598 2.15821 2.51186 2.96479 3.25016 3.36475 3.53039 3.65828 3.80679 3.86239 3.95611 4.02425 4.04519 4.23552 4.28172 4.31590 4.35605 4.42659 4.45104 4.54211 4.61842 4.62736 4.68453 4.79719 4.88679 4.92835 4.94281 5.10699 5.14163 5.18031 5.29425 5.47765 5.54988 5.62806 5.67883 5.78741 5.80569 6.11080 6.21435 6.41209 6.91783 7.10713 7.79626 8.47976 9.29672 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008996 B = 0.005601 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.584059 B = 4997.600531 C = 7864.045775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.971 3.029 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.226 4.226 8 H 0.082 0.918 9 N -0.609 5.609 10 C 0.181 3.819 11 C -0.122 4.122 12 C -0.102 4.102 13 H 0.076 0.924 14 C -0.107 4.107 15 C 0.108 3.892 16 N -0.588 5.588 17 C 0.598 3.402 18 O -0.552 6.552 19 C 0.038 3.962 20 C -0.230 4.230 21 C 0.243 3.757 22 N -0.415 5.415 23 N -0.235 5.235 24 C 0.078 3.922 25 C 0.046 3.954 26 O -0.285 6.285 27 C 0.091 3.909 28 C 0.152 3.848 29 H 0.006 0.994 30 H 0.245 0.755 31 H 0.023 0.977 32 H 0.000 1.000 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.172 0.828 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.109 0.891 43 H 0.174 0.826 44 H 0.131 0.869 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.686 -7.065 -2.059 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.800 3.200 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.355 4.355 8 H 0.099 0.901 9 N -0.334 5.334 10 C 0.057 3.943 11 C -0.160 4.160 12 C -0.121 4.121 13 H 0.094 0.906 14 C -0.145 4.145 15 C -0.013 4.013 16 N -0.319 5.319 17 C 0.384 3.616 18 O -0.430 6.430 19 C -0.127 4.127 20 C -0.260 4.260 21 C 0.073 3.927 22 N -0.211 5.211 23 N -0.065 5.065 24 C -0.041 4.041 25 C -0.029 4.029 26 O -0.192 6.192 27 C -0.034 4.034 28 C 0.044 3.956 29 H 0.023 0.977 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.018 0.982 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.190 0.810 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.127 0.873 43 H 0.191 0.809 44 H 0.147 0.853 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.267 -6.449 -1.716 14.851 hybrid contribution 0.367 1.011 -0.351 1.131 sum 13.634 -5.438 -2.067 14.823 Atomic orbital electron populations 1.70164 1.06262 1.25058 1.58704 1.25594 0.96528 1.00798 1.03094 0.85172 0.77924 0.79504 0.77394 1.21370 1.22386 1.19054 1.19344 0.90742 0.83338 1.42086 0.90060 1.44416 1.02320 1.00313 1.86374 1.21340 0.83183 0.92156 0.97656 1.22684 0.97428 0.95164 1.00722 1.22332 0.95193 0.95186 0.99422 0.90580 1.21771 0.96054 0.95215 1.01457 1.21866 0.87683 0.91820 0.99919 1.48179 1.13789 1.08276 1.61666 1.17082 0.81061 0.86207 0.77243 1.90735 1.77583 1.16901 1.57752 1.21951 0.96653 0.91300 1.02777 1.20078 0.95207 0.97010 1.13742 1.20818 0.84748 0.91166 0.95941 1.51447 1.14974 1.08563 1.46090 1.77526 1.01963 1.07163 1.19893 1.23837 0.95900 0.82541 1.01844 1.24889 1.00581 0.78370 0.99050 1.87130 1.27257 1.29553 1.75239 1.22600 0.99963 0.79400 1.01397 1.21048 0.93094 0.86125 0.95342 0.97651 0.94584 0.95882 0.98171 0.89666 0.91317 0.91792 0.87037 0.88447 0.89934 0.81024 0.86006 0.85689 0.87311 0.80879 0.85251 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.03 10.43 21.65 0.23 -56.80 16 2 C -0.07 -3.80 5.49 84.86 0.47 -3.34 16 3 Si 0.97 44.77 29.55 68.60 2.03 46.80 16 4 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.23 -12.46 9.88 84.03 0.83 -11.63 16 8 H 0.08 4.33 7.41 -2.91 -0.02 4.31 16 9 N -0.61 -31.14 3.35 -669.35 -2.24 -33.38 16 10 C 0.18 8.96 5.44 86.85 0.47 9.43 16 11 C -0.12 -4.39 6.58 31.80 0.21 -4.18 16 12 C -0.10 -3.43 2.63 -9.91 -0.03 -3.46 16 13 H 0.08 2.62 8.13 -2.39 -0.02 2.60 16 14 C -0.11 -2.77 5.73 30.56 0.17 -2.59 16 15 C 0.11 2.94 6.32 86.66 0.55 3.49 16 16 N -0.59 -19.78 3.01 -822.40 -2.48 -22.26 16 17 C 0.60 21.17 7.68 86.75 0.67 21.84 16 18 O -0.55 -20.63 16.26 -3.93 -0.06 -20.70 16 19 C 0.04 1.30 6.85 42.31 0.29 1.59 16 20 C -0.23 -6.91 10.61 22.45 0.24 -6.68 16 21 C 0.24 6.47 8.32 83.60 0.70 7.16 16 22 N -0.41 -11.61 5.01 -453.33 -2.27 -13.88 16 23 N -0.24 -8.27 8.94 -48.52 -0.43 -8.71 16 24 C 0.08 1.27 8.10 86.76 0.70 1.97 16 25 C 0.05 0.47 8.08 72.54 0.59 1.06 16 26 O -0.28 -5.67 11.19 -94.88 -1.06 -6.73 16 27 C 0.09 3.48 5.51 85.73 0.47 3.95 16 28 C 0.15 6.34 2.77 45.59 0.13 6.47 16 29 H 0.01 0.27 7.90 -2.38 -0.02 0.25 16 30 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 31 H 0.02 1.27 7.21 -2.39 -0.02 1.25 16 32 H 0.00 0.00 7.76 -2.39 -0.02 -0.02 16 33 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.07 2.31 8.13 -2.39 -0.02 2.29 16 35 H 0.06 1.74 7.97 -2.39 -0.02 1.72 16 36 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.10 2.56 6.98 -2.38 -0.02 2.55 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.17 4.62 8.06 -2.91 -0.02 4.60 16 40 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.17 0.28 8.14 -2.38 -0.02 0.26 16 44 H 0.13 5.32 3.45 -101.93 -0.35 4.97 16 45 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -75.76 355.47 0.83 -74.93 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.67 Total: 15.65 kcal Atomic # 6 Polarization: 18.62 SS G_CDS: 6.45 Total: 25.08 kcal Atomic # 7 Polarization: -127.84 SS G_CDS: -7.20 Total: -135.03 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -1.13 Total: -27.43 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -75.76 0.83 -74.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042096347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.735 kcal (2) G-P(sol) polarization free energy of solvation -75.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds