Wall clock time and date at job start Tue Mar 31 2020 16:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00246 * 2 1 4 4 H 1.48490 * 109.47359 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46620 * 300.00008 * 3 2 1 6 6 H 1.48497 * 109.47032 * 59.99162 * 3 2 1 7 7 C 1.38817 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99910 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00144 * 0.02562 * 7 2 1 10 10 C 1.47444 * 126.05955 * 359.97438 * 9 7 2 11 11 C 1.54493 * 107.14849 * 178.38043 * 10 9 7 12 12 C 1.56027 * 102.61672 * 337.15569 * 11 10 9 13 13 H 1.09000 * 113.51624 * 157.36573 * 12 11 10 14 14 C 1.53091 * 106.39185 * 281.62471 * 12 11 10 15 15 C 1.52834 * 110.58343 * 164.56068 * 14 12 11 16 16 N 1.47157 * 107.97661 * 302.65411 * 15 14 12 17 17 C 1.34779 * 121.21963 * 237.28760 * 16 15 14 18 18 O 1.21567 * 120.00191 * 185.41461 * 17 16 15 19 19 C 1.47725 * 119.99681 * 5.14654 * 17 16 15 20 20 C 1.40937 * 125.97286 * 174.54726 * 19 17 16 21 21 C 1.36176 * 107.95131 * 179.97438 * 20 19 17 22 22 N 1.35799 * 107.31183 * 0.04995 * 21 20 19 23 23 N 1.31838 * 125.97538 * 354.85593 * 19 17 16 24 24 C 1.47428 * 108.06832 * 180.45100 * 22 21 20 25 25 C 1.54651 * 102.35228 * 15.27996 * 24 22 21 26 26 O 1.36122 * 140.87009 * 179.28077 * 21 20 19 27 27 C 1.46760 * 117.56570 * 57.56376 * 16 15 14 28 28 C 1.46464 * 126.06245 * 179.97438 * 9 7 2 29 29 H 1.08998 * 108.42475 * 90.10368 * 28 9 7 30 30 H 0.96996 * 120.00108 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.90111 * 297.76301 * 10 9 7 32 32 H 1.09001 * 109.89932 * 58.82174 * 10 9 7 33 33 H 1.08997 * 110.78584 * 218.87135 * 11 10 9 34 34 H 1.09007 * 110.78315 * 95.43206 * 11 10 9 35 35 H 1.09000 * 109.25516 * 44.27364 * 14 12 11 36 36 H 1.09002 * 109.22408 * 284.81972 * 14 12 11 37 37 H 1.08998 * 109.76425 * 183.03710 * 15 14 12 38 38 H 1.09002 * 109.80350 * 62.29786 * 15 14 12 39 39 H 1.08003 * 126.02466 * 0.11196 * 20 19 17 40 40 H 1.08999 * 110.83327 * 133.49321 * 24 22 21 41 41 H 1.09001 * 110.83035 * 256.86940 * 24 22 21 42 42 H 1.09007 * 110.85420 * 93.34360 * 25 24 22 43 43 H 1.08993 * 110.85585 * 216.97653 * 25 24 22 44 44 H 1.08999 * 109.22780 * 67.51273 * 27 16 15 45 45 H 1.09001 * 109.23058 * 186.87645 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1406 -2.5438 0.0005 11 6 -0.4377 -4.0593 -0.0412 12 6 0.8719 -4.6467 -0.6530 13 1 1.0294 -5.6987 -0.4150 14 6 0.7964 -4.3922 -2.1607 15 6 2.1697 -4.5756 -2.8059 16 7 3.1095 -3.6581 -2.1423 17 6 3.8018 -2.7391 -2.8443 18 8 4.6439 -2.0591 -2.2907 19 6 3.5414 -2.5621 -4.2876 20 6 4.1089 -1.5732 -5.1161 21 6 3.6175 -1.7472 -6.3741 22 7 2.7706 -2.8079 -6.3341 23 7 2.7332 -3.2981 -5.0246 24 6 2.2366 -3.0181 -7.6921 25 6 3.2036 -2.1807 -8.5612 26 8 3.6923 -1.2063 -7.6210 27 6 3.2701 -3.7844 -0.6890 28 6 1.9199 -3.7267 0.0005 29 1 2.0580 -4.0424 1.0346 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5600 -2.1082 0.9075 32 1 -0.5655 -2.0553 -0.8763 33 1 -1.2926 -4.2683 -0.6843 34 1 -0.6038 -4.4487 0.9633 35 1 0.4498 -3.3738 -2.3364 36 1 0.0925 -5.0937 -2.6083 37 1 2.1122 -4.3392 -3.8684 38 1 2.5048 -5.6045 -2.6750 39 1 4.8114 -0.8130 -4.8080 40 1 2.2817 -4.0718 -7.9676 41 1 1.2164 -2.6422 -7.7700 42 1 4.0188 -2.7978 -8.9393 43 1 2.6701 -1.6970 -9.3793 44 1 3.7522 -4.7354 -0.4625 45 1 3.8960 -2.9697 -0.3248 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042096349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:57 Heat of formation + Delta-G solvation = 90.111161 kcal Electronic energy + Delta-G solvation = -30261.109359 eV Core-core repulsion = 26283.593279 eV Total energy + Delta-G solvation = -3977.516080 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.34659 -39.96586 -38.67139 -37.63736 -34.94337 -33.40061 -32.75806 -31.18998 -30.25975 -29.00265 -28.74302 -28.26041 -25.12012 -24.46533 -23.58166 -22.48709 -22.07677 -21.43278 -19.91513 -19.49590 -18.28699 -17.62449 -17.07185 -16.55686 -16.48585 -15.68443 -15.35725 -15.17837 -14.79727 -14.60785 -14.28385 -14.06532 -13.86358 -13.70394 -13.42457 -13.00486 -12.87551 -12.76286 -12.57064 -12.52667 -11.92211 -11.60749 -11.49966 -11.38040 -11.25378 -10.82165 -10.75876 -10.68035 -10.34190 -9.97985 -9.78656 -9.78149 -9.59559 -9.47275 -9.25894 -9.20433 -8.54048 -8.46297 -8.05267 -6.69161 -5.57418 -2.89077 1.39301 1.74631 2.18399 2.66127 3.42233 3.52625 3.59239 3.65672 3.70067 3.81330 4.24642 4.37030 4.62112 4.65238 4.77801 4.94840 5.10731 5.18507 5.26525 5.34923 5.46438 5.57452 5.61041 5.69278 5.78879 5.81604 5.88049 6.02087 6.08673 6.16329 6.24320 6.34221 6.36941 6.50887 6.57042 6.64663 6.70463 6.77866 6.82574 7.05759 7.20329 7.50223 7.69700 7.71830 7.92161 7.98091 8.37490 8.62124 9.36238 9.97374 10.61946 11.55053 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.004862 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.565925 B = 5758.139445 C = 6877.709245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.213 4.213 8 H 0.082 0.918 9 N -0.589 5.589 10 C 0.179 3.821 11 C -0.143 4.143 12 C -0.102 4.102 13 H 0.075 0.925 14 C -0.118 4.118 15 C 0.082 3.918 16 N -0.578 5.578 17 C 0.605 3.395 18 O -0.521 6.521 19 C 0.077 3.923 20 C -0.210 4.210 21 C 0.232 3.768 22 N -0.420 5.420 23 N -0.222 5.222 24 C 0.097 3.903 25 C 0.042 3.958 26 O -0.280 6.280 27 C 0.114 3.886 28 C 0.154 3.846 29 H 0.028 0.972 30 H 0.248 0.752 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.127 0.873 38 H 0.060 0.940 39 H 0.165 0.835 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.128 0.872 44 H 0.059 0.941 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.907 -11.874 -16.470 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.204 4.204 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.341 4.341 8 H 0.100 0.900 9 N -0.314 5.314 10 C 0.054 3.946 11 C -0.181 4.181 12 C -0.122 4.122 13 H 0.093 0.907 14 C -0.156 4.156 15 C -0.042 4.042 16 N -0.309 5.309 17 C 0.389 3.611 18 O -0.394 6.394 19 C -0.089 4.089 20 C -0.240 4.240 21 C 0.065 3.935 22 N -0.215 5.215 23 N -0.051 5.051 24 C -0.024 4.024 25 C -0.035 4.035 26 O -0.187 6.187 27 C -0.010 4.010 28 C 0.046 3.954 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.143 0.857 38 H 0.079 0.921 39 H 0.182 0.818 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.146 0.854 44 H 0.077 0.923 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.521 -12.080 -16.324 20.464 hybrid contribution 0.508 1.481 -0.222 1.581 sum 3.028 -10.599 -16.546 19.882 Atomic orbital electron populations 1.69971 1.04819 1.24567 1.58058 1.24702 0.95576 0.97453 1.02637 0.86134 0.79423 0.84125 0.76927 1.20052 1.22004 1.22043 1.19102 0.90635 0.82041 1.42328 0.89985 1.44296 1.01429 0.99264 1.86413 1.21208 0.84321 0.88277 1.00775 1.23147 0.96118 0.99706 0.99149 1.22398 0.97044 0.97667 0.95107 0.90671 1.21781 0.95850 1.03094 0.94909 1.22557 0.89129 0.92357 1.00138 1.47625 1.41418 1.33748 1.08127 1.16717 0.81626 0.80072 0.82703 1.90791 1.33610 1.45844 1.69168 1.22133 0.96304 0.95398 0.95089 1.20063 1.10216 1.06434 0.87302 1.20735 0.94597 0.89790 0.88423 1.51033 1.36063 1.26712 1.07717 1.77393 1.22219 1.21265 0.84259 1.23208 0.99561 1.03577 0.76073 1.24425 0.96926 0.89759 0.92346 1.87140 1.82567 1.36902 1.12103 1.21610 0.99179 1.01712 0.78453 1.20789 0.90986 0.87895 0.95767 0.95483 0.94165 0.94148 0.93750 0.92382 0.92769 0.90322 0.92289 0.85675 0.92132 0.81770 0.87159 0.87793 0.88940 0.85396 0.92322 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.10 10.38 55.49 0.58 -27.53 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.90 23.87 29.55 -169.99 -5.02 18.84 16 4 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 6 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 7 C -0.21 -6.09 9.71 -15.06 -0.15 -6.23 16 8 H 0.08 2.39 6.53 -52.49 -0.34 2.05 16 9 N -0.59 -14.96 3.20 -164.16 -0.53 -15.48 16 10 C 0.18 4.37 4.61 -2.74 -0.01 4.36 16 11 C -0.14 -2.67 6.33 -24.33 -0.15 -2.82 16 12 C -0.10 -1.77 3.68 -88.43 -0.33 -2.09 16 13 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 14 C -0.12 -2.00 5.04 -26.77 -0.13 -2.13 16 15 C 0.08 1.32 6.33 -3.77 -0.02 1.29 16 16 N -0.58 -11.05 2.96 -174.98 -0.52 -11.57 16 17 C 0.60 12.62 7.71 -12.38 -0.10 12.52 16 18 O -0.52 -12.32 16.38 5.31 0.09 -12.23 16 19 C 0.08 1.43 6.88 -82.97 -0.57 0.86 16 20 C -0.21 -3.61 10.60 -39.30 -0.42 -4.03 16 21 C 0.23 3.38 8.32 -16.54 -0.14 3.25 16 22 N -0.42 -5.65 5.01 -59.63 -0.30 -5.95 16 23 N -0.22 -3.64 9.04 33.31 0.30 -3.34 16 24 C 0.10 0.70 8.10 -2.67 -0.02 0.68 16 25 C 0.04 0.24 8.08 38.03 0.31 0.55 16 26 O -0.28 -3.26 11.19 -20.13 -0.23 -3.48 16 27 C 0.11 2.20 5.70 -4.55 -0.03 2.17 16 28 C 0.15 3.16 2.97 -68.08 -0.20 2.96 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.04 1.10 7.57 -51.93 -0.39 0.71 16 32 H 0.04 1.22 7.04 -51.93 -0.37 0.85 16 33 H 0.06 0.99 7.97 -51.93 -0.41 0.57 16 34 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.08 1.66 6.86 -51.93 -0.36 1.30 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.13 2.02 3.74 -112.43 -0.42 1.60 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.16 2.72 8.06 -52.48 -0.42 2.30 16 40 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.13 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.10 2.14 5.60 -51.93 -0.29 1.85 16 LS Contribution 351.69 15.07 5.30 5.30 Total: -1.00 -36.14 351.69 -8.75 -44.89 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.37 Total: -0.45 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -2.06 Total: 10.99 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: -0.47 Total: -63.87 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.14 Total: -15.72 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.02 Total: 18.84 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.14 -8.75 -44.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042096349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.004 kcal (2) G-P(sol) polarization free energy of solvation -36.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds