Wall clock time and date at job start Tue Mar 31 2020 16:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00246 * 2 1 4 4 H 1.48490 * 109.47359 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46620 * 300.00008 * 3 2 1 6 6 H 1.48497 * 109.47032 * 59.99162 * 3 2 1 7 7 C 1.38817 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99910 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00144 * 0.02562 * 7 2 1 10 10 C 1.47444 * 126.05955 * 359.97438 * 9 7 2 11 11 C 1.54493 * 107.14849 * 178.38043 * 10 9 7 12 12 C 1.56027 * 102.61672 * 337.15569 * 11 10 9 13 13 H 1.09000 * 113.51624 * 157.36573 * 12 11 10 14 14 C 1.53091 * 106.39185 * 281.62471 * 12 11 10 15 15 C 1.52834 * 110.58343 * 164.56068 * 14 12 11 16 16 N 1.47157 * 107.97661 * 302.65411 * 15 14 12 17 17 C 1.34779 * 121.21963 * 237.28760 * 16 15 14 18 18 O 1.21567 * 120.00191 * 185.41461 * 17 16 15 19 19 C 1.47725 * 119.99681 * 5.14654 * 17 16 15 20 20 C 1.40937 * 125.97286 * 174.54726 * 19 17 16 21 21 C 1.36176 * 107.95131 * 179.97438 * 20 19 17 22 22 N 1.35799 * 107.31183 * 0.04995 * 21 20 19 23 23 N 1.31838 * 125.97538 * 354.85593 * 19 17 16 24 24 C 1.47428 * 108.06832 * 180.45100 * 22 21 20 25 25 C 1.54651 * 102.35228 * 15.27996 * 24 22 21 26 26 O 1.36122 * 140.87009 * 179.28077 * 21 20 19 27 27 C 1.46760 * 117.56570 * 57.56376 * 16 15 14 28 28 C 1.46464 * 126.06245 * 179.97438 * 9 7 2 29 29 H 1.08998 * 108.42475 * 90.10368 * 28 9 7 30 30 H 0.96996 * 120.00108 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.90111 * 297.76301 * 10 9 7 32 32 H 1.09001 * 109.89932 * 58.82174 * 10 9 7 33 33 H 1.08997 * 110.78584 * 218.87135 * 11 10 9 34 34 H 1.09007 * 110.78315 * 95.43206 * 11 10 9 35 35 H 1.09000 * 109.25516 * 44.27364 * 14 12 11 36 36 H 1.09002 * 109.22408 * 284.81972 * 14 12 11 37 37 H 1.08998 * 109.76425 * 183.03710 * 15 14 12 38 38 H 1.09002 * 109.80350 * 62.29786 * 15 14 12 39 39 H 1.08003 * 126.02466 * 0.11196 * 20 19 17 40 40 H 1.08999 * 110.83327 * 133.49321 * 24 22 21 41 41 H 1.09001 * 110.83035 * 256.86940 * 24 22 21 42 42 H 1.09007 * 110.85420 * 93.34360 * 25 24 22 43 43 H 1.08993 * 110.85585 * 216.97653 * 25 24 22 44 44 H 1.08999 * 109.22780 * 67.51273 * 27 16 15 45 45 H 1.09001 * 109.23058 * 186.87645 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1406 -2.5438 0.0005 11 6 -0.4377 -4.0593 -0.0412 12 6 0.8719 -4.6467 -0.6530 13 1 1.0294 -5.6987 -0.4150 14 6 0.7964 -4.3922 -2.1607 15 6 2.1697 -4.5756 -2.8059 16 7 3.1095 -3.6581 -2.1423 17 6 3.8018 -2.7391 -2.8443 18 8 4.6439 -2.0591 -2.2907 19 6 3.5414 -2.5621 -4.2876 20 6 4.1089 -1.5732 -5.1161 21 6 3.6175 -1.7472 -6.3741 22 7 2.7706 -2.8079 -6.3341 23 7 2.7332 -3.2981 -5.0246 24 6 2.2366 -3.0181 -7.6921 25 6 3.2036 -2.1807 -8.5612 26 8 3.6923 -1.2063 -7.6210 27 6 3.2701 -3.7844 -0.6890 28 6 1.9199 -3.7267 0.0005 29 1 2.0580 -4.0424 1.0346 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5600 -2.1082 0.9075 32 1 -0.5655 -2.0553 -0.8763 33 1 -1.2926 -4.2683 -0.6843 34 1 -0.6038 -4.4487 0.9633 35 1 0.4498 -3.3738 -2.3364 36 1 0.0925 -5.0937 -2.6083 37 1 2.1122 -4.3392 -3.8684 38 1 2.5048 -5.6045 -2.6750 39 1 4.8114 -0.8130 -4.8080 40 1 2.2817 -4.0718 -7.9676 41 1 1.2164 -2.6422 -7.7700 42 1 4.0188 -2.7978 -8.9393 43 1 2.6701 -1.6970 -9.3793 44 1 3.7522 -4.7354 -0.4625 45 1 3.8960 -2.9697 -0.3248 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042096349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:56 Heat of formation + Delta-G solvation = 62.704424 kcal Electronic energy + Delta-G solvation = -30262.297805 eV Core-core repulsion = 26283.593279 eV Total energy + Delta-G solvation = -3978.704526 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.38918 -41.41741 -39.95588 -39.07273 -36.60170 -34.67954 -34.30626 -32.86527 -31.58297 -30.42435 -30.01434 -29.84128 -26.60168 -26.29488 -24.64039 -23.94976 -23.29002 -22.53418 -21.72606 -20.96334 -19.75530 -18.66919 -18.44741 -18.16127 -17.58443 -17.12401 -16.69271 -16.59605 -16.35097 -15.94198 -15.87053 -15.59223 -15.18232 -15.13090 -14.58260 -14.38138 -14.26000 -14.16248 -13.95690 -13.74455 -13.22359 -13.14797 -13.12307 -12.97232 -12.67377 -12.66793 -12.37228 -12.22100 -12.04623 -11.84362 -11.66667 -11.40388 -11.33783 -11.19998 -10.71256 -10.64435 -10.27348 -9.70456 -9.53653 -8.79826 -7.83780 -5.13498 0.13487 0.78962 0.93209 1.35369 1.37798 1.49645 1.67178 2.13902 2.35891 2.48203 3.00140 3.34444 3.35577 3.55003 3.76195 3.85966 3.90361 3.97390 4.07042 4.14703 4.24283 4.32690 4.37732 4.47614 4.49933 4.52623 4.61644 4.64519 4.66935 4.73512 4.76776 4.89677 4.94452 5.01717 5.13637 5.17428 5.28112 5.34066 5.54037 5.65029 5.70710 5.73579 5.81116 5.82949 6.23962 6.30885 6.49752 7.09406 7.15673 7.83933 8.47085 9.27240 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.004862 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.565925 B = 5758.139445 C = 6877.709245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.286 1.286 7 C -0.204 4.204 8 H 0.069 0.931 9 N -0.606 5.606 10 C 0.187 3.813 11 C -0.128 4.128 12 C -0.085 4.085 13 H 0.127 0.873 14 C -0.112 4.112 15 C 0.081 3.919 16 N -0.578 5.578 17 C 0.592 3.408 18 O -0.568 6.568 19 C 0.051 3.949 20 C -0.248 4.248 21 C 0.246 3.754 22 N -0.410 5.410 23 N -0.222 5.222 24 C 0.085 3.915 25 C 0.040 3.960 26 O -0.292 6.292 27 C 0.115 3.885 28 C 0.141 3.859 29 H 0.035 0.965 30 H 0.242 0.758 31 H 0.000 1.000 32 H 0.003 0.997 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.027 0.973 36 H 0.098 0.902 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.168 0.832 44 H 0.102 0.898 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.276 -15.389 -19.081 24.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.257 4.257 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.225 1.225 6 H -0.213 1.213 7 C -0.333 4.333 8 H 0.087 0.913 9 N -0.331 5.331 10 C 0.062 3.938 11 C -0.166 4.166 12 C -0.104 4.104 13 H 0.144 0.856 14 C -0.151 4.151 15 C -0.042 4.042 16 N -0.309 5.309 17 C 0.378 3.622 18 O -0.446 6.446 19 C -0.114 4.114 20 C -0.279 4.279 21 C 0.076 3.924 22 N -0.207 5.207 23 N -0.052 5.052 24 C -0.033 4.033 25 C -0.035 4.035 26 O -0.199 6.199 27 C -0.008 4.008 28 C 0.035 3.965 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.018 0.982 32 H 0.022 0.978 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.116 0.884 37 H 0.145 0.855 38 H 0.119 0.881 39 H 0.170 0.830 40 H 0.162 0.838 41 H 0.138 0.862 42 H 0.134 0.866 43 H 0.186 0.814 44 H 0.120 0.880 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.875 -15.658 -18.964 24.665 hybrid contribution 0.690 2.518 0.406 2.643 sum 2.565 -13.140 -18.558 22.883 Atomic orbital electron populations 1.70155 1.05628 1.24403 1.59872 1.25317 0.96364 0.99984 1.04059 0.85354 0.78200 0.81408 0.76753 1.20312 1.22480 1.21272 1.19168 0.90267 0.83738 1.40157 0.91346 1.44494 1.02213 1.00421 1.86012 1.20960 0.83571 0.92406 0.96892 1.23009 0.97852 0.94717 1.01025 1.22463 0.94008 0.99248 0.94697 0.85560 1.21730 0.97083 1.01107 0.95140 1.22800 0.87937 0.93465 0.99971 1.47809 1.41395 1.33651 1.08042 1.17174 0.81333 0.79762 0.83912 1.90739 1.35751 1.47600 1.70487 1.21771 0.98256 0.97054 0.94307 1.20069 1.11687 1.07112 0.88993 1.20563 0.93661 0.89420 0.88788 1.51461 1.35142 1.25695 1.08413 1.77201 1.21410 1.21063 0.85567 1.23864 1.00526 1.06243 0.72688 1.24986 0.97736 0.89154 0.91616 1.87156 1.82658 1.38652 1.11431 1.21565 0.98100 1.02395 0.78751 1.21127 0.92530 0.86120 0.96765 0.94725 0.94888 0.98195 0.97842 0.90183 0.90983 0.95418 0.88371 0.85543 0.88149 0.82994 0.83766 0.86186 0.86572 0.81425 0.87966 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.73 10.38 21.65 0.22 -60.51 16 2 C -0.06 -4.02 5.49 84.86 0.47 -3.55 16 3 Si 0.95 51.59 29.55 68.60 2.03 53.61 16 4 H -0.28 -14.98 7.11 99.48 0.71 -14.28 16 5 H -0.30 -16.16 7.11 99.48 0.71 -15.46 16 6 H -0.29 -14.99 7.11 99.48 0.71 -14.29 16 7 C -0.20 -12.23 9.71 84.03 0.82 -11.41 16 8 H 0.07 4.24 6.53 -2.91 -0.02 4.22 16 9 N -0.61 -31.74 3.20 -673.29 -2.15 -33.90 16 10 C 0.19 9.41 4.61 86.71 0.40 9.81 16 11 C -0.13 -4.48 6.33 32.15 0.20 -4.28 16 12 C -0.08 -2.61 3.68 -9.38 -0.03 -2.65 16 13 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 14 C -0.11 -3.47 5.04 30.57 0.15 -3.32 16 15 C 0.08 2.37 6.33 86.20 0.55 2.91 16 16 N -0.58 -22.00 2.96 -825.78 -2.45 -24.44 16 17 C 0.59 25.84 7.71 86.75 0.67 26.51 16 18 O -0.57 -28.87 16.38 -3.93 -0.06 -28.93 16 19 C 0.05 1.94 6.88 42.31 0.29 2.23 16 20 C -0.25 -8.97 10.60 22.45 0.24 -8.73 16 21 C 0.25 7.01 8.32 83.60 0.70 7.70 16 22 N -0.41 -10.26 5.01 -453.34 -2.27 -12.53 16 23 N -0.22 -7.08 9.04 -48.51 -0.44 -7.51 16 24 C 0.08 0.88 8.10 86.76 0.70 1.59 16 25 C 0.04 0.30 8.08 72.54 0.59 0.88 16 26 O -0.29 -6.19 11.19 -94.94 -1.06 -7.25 16 27 C 0.11 4.39 5.70 85.91 0.49 4.88 16 28 C 0.14 5.64 2.97 44.92 0.13 5.78 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.00 -0.01 7.57 -2.39 -0.02 -0.03 16 32 H 0.00 0.19 7.04 -2.39 -0.02 0.18 16 33 H 0.08 2.48 7.97 -2.39 -0.02 2.46 16 34 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.03 1.14 6.86 -2.39 -0.02 1.13 16 36 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.13 3.80 3.74 -81.51 -0.30 3.50 16 38 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.15 5.59 8.06 -2.91 -0.02 5.56 16 40 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 43 H 0.17 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 45 H 0.06 2.66 5.60 -2.39 -0.01 2.65 16 Total: -1.00 -88.33 351.69 0.90 -87.43 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 0.72 Total: 5.66 kcal Atomic # 6 Polarization: 22.00 SS G_CDS: 6.36 Total: 28.36 kcal Atomic # 7 Polarization: -131.80 SS G_CDS: -7.08 Total: -138.89 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -1.13 Total: -36.19 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 2.03 Total: 53.61 kcal Total: -88.33 0.90 -87.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042096349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.139 kcal (2) G-P(sol) polarization free energy of solvation -88.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds