Wall clock time and date at job start Tue Mar 31 2020 16:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00453 * 2 1 4 4 H 1.48507 * 109.47006 * 269.99839 * 3 2 1 5 5 H 1.48508 * 109.47272 * 29.99508 * 3 2 1 6 6 H 1.48503 * 109.47448 * 149.99622 * 3 2 1 7 7 C 1.38818 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99630 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00265 * 0.02562 * 7 2 1 10 10 C 1.47434 * 126.05858 * 359.97112 * 9 7 2 11 11 C 1.54504 * 107.14743 * 181.63620 * 10 9 7 12 12 C 1.56035 * 102.60691 * 22.85850 * 11 10 9 13 13 H 1.09008 * 112.86016 * 202.91662 * 12 11 10 14 14 C 1.53091 * 107.06663 * 78.60399 * 12 11 10 15 15 C 1.52842 * 110.57542 * 195.09722 * 14 12 11 16 16 N 1.47222 * 107.31885 * 58.48267 * 15 14 12 17 17 C 1.34777 * 121.79177 * 122.31734 * 16 15 14 18 18 O 1.21572 * 120.00311 * 172.95271 * 17 16 15 19 19 C 1.47722 * 119.99797 * 352.95947 * 17 16 15 20 20 C 1.40940 * 125.97381 * 185.05462 * 19 17 16 21 21 C 1.36171 * 107.95285 * 180.08140 * 20 19 17 22 22 N 1.35808 * 107.31105 * 359.64516 * 21 20 19 23 23 N 1.31843 * 125.97369 * 4.74197 * 19 17 16 24 24 C 1.47430 * 108.06695 * 180.65697 * 22 21 20 25 25 C 1.54646 * 102.35493 * 15.25656 * 24 22 21 26 26 O 1.36124 * 140.88117 * 179.12664 * 21 20 19 27 27 C 1.46762 * 116.98035 * 301.00177 * 16 15 14 28 28 C 1.46467 * 126.06166 * 179.97438 * 9 7 2 29 29 H 1.09000 * 107.85967 * 269.61148 * 28 9 7 30 30 H 0.96998 * 119.99477 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.90337 * 62.26233 * 10 9 7 32 32 H 1.08998 * 109.90915 * 301.02136 * 10 9 7 33 33 H 1.08994 * 110.78336 * 264.57635 * 11 10 9 34 34 H 1.09001 * 110.94174 * 141.20926 * 11 10 9 35 35 H 1.08997 * 109.25400 * 315.37665 * 14 12 11 36 36 H 1.08997 * 109.26062 * 74.81153 * 14 12 11 37 37 H 1.08992 * 109.76174 * 176.96238 * 15 14 12 38 38 H 1.09001 * 109.75562 * 297.66953 * 15 14 12 39 39 H 1.08002 * 126.02684 * 0.10129 * 20 19 17 40 40 H 1.09002 * 110.82703 * 133.47653 * 24 22 21 41 41 H 1.08996 * 110.82694 * 257.03974 * 24 22 21 42 42 H 1.09005 * 110.84764 * 93.34664 * 25 24 22 43 43 H 1.08995 * 110.85256 * 216.77485 * 25 24 22 44 44 H 1.09002 * 109.22428 * 293.52402 * 27 16 15 45 45 H 1.09000 * 109.22846 * 174.12074 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1407 -2.5437 0.0006 11 6 -0.4379 -4.0593 0.0427 12 6 0.8717 -4.6463 0.6550 13 1 1.0212 -5.6972 0.4069 14 6 0.8093 -4.4044 2.1654 15 6 2.1866 -4.6011 2.7983 16 7 3.1083 -3.6577 2.1442 17 6 3.8003 -2.7388 2.8464 18 8 4.6463 -2.0624 2.2944 19 6 3.5308 -2.5536 4.2870 20 6 4.1035 -1.5685 5.1165 21 6 3.6014 -1.7328 6.3715 22 7 2.7377 -2.7799 6.3273 23 7 2.7083 -3.2774 5.0204 24 6 2.1714 -2.9627 7.6762 25 6 2.5399 -1.6322 8.3729 26 8 3.6912 -1.2038 7.6225 27 6 3.2652 -3.7802 0.6901 28 6 1.9197 -3.7268 0.0005 29 1 2.0489 -4.0352 -1.0369 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5600 -2.1084 -0.9065 32 1 -0.5654 -2.0576 0.8789 33 1 -0.6038 -4.4489 -0.9616 34 1 -1.2934 -4.2708 0.6842 35 1 0.4700 -3.3856 2.3525 36 1 0.1046 -5.1051 2.6130 37 1 2.1388 -4.3736 3.8631 38 1 2.5137 -5.6311 2.6560 39 1 4.8149 -0.8156 4.8105 40 1 1.0897 -3.0888 7.6286 41 1 2.6392 -3.8075 8.1817 42 1 1.7283 -0.9101 8.2842 43 1 2.7953 -1.7999 9.4192 44 1 3.7489 -4.7295 0.4600 45 1 3.8877 -2.9627 0.3261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042096350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:00 Heat of formation + Delta-G solvation = 89.746869 kcal Electronic energy + Delta-G solvation = -30283.941979 eV Core-core repulsion = 26306.410102 eV Total energy + Delta-G solvation = -3977.531877 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.33764 -39.96494 -38.66924 -37.63341 -34.94948 -33.39365 -32.75213 -31.18938 -30.25883 -29.00257 -28.74522 -28.26093 -25.12359 -24.46317 -23.57373 -22.47536 -22.08120 -21.42593 -19.91499 -19.49417 -18.27013 -17.65563 -17.06306 -16.52621 -16.47927 -15.70365 -15.36005 -15.10184 -14.82287 -14.68722 -14.19372 -14.12137 -13.86090 -13.65983 -13.45566 -12.98438 -12.88275 -12.75370 -12.57375 -12.51371 -11.91891 -11.63802 -11.46497 -11.36302 -11.25411 -10.82628 -10.75153 -10.68893 -10.34122 -10.01280 -9.79138 -9.77121 -9.60305 -9.47677 -9.27275 -9.20151 -8.53589 -8.45991 -8.05594 -6.69159 -5.57486 -2.89054 1.38780 1.75408 2.19642 2.66573 3.43465 3.52491 3.57623 3.65607 3.71452 3.79493 4.26857 4.37764 4.63461 4.65331 4.79706 4.94995 5.11488 5.19433 5.26838 5.34263 5.45999 5.57869 5.61114 5.69083 5.79318 5.81553 5.88075 6.02343 6.08294 6.16345 6.24291 6.34758 6.37187 6.51109 6.55575 6.64089 6.70649 6.78395 6.83189 7.05466 7.20089 7.50286 7.69767 7.71299 7.92567 7.97405 8.37401 8.61908 9.36101 9.97276 10.62069 11.54929 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011282 B = 0.004938 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.318884 B = 5669.435024 C = 6759.673041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.901 3.099 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.213 4.213 8 H 0.082 0.918 9 N -0.589 5.589 10 C 0.180 3.820 11 C -0.143 4.143 12 C -0.102 4.102 13 H 0.074 0.926 14 C -0.117 4.117 15 C 0.083 3.917 16 N -0.578 5.578 17 C 0.606 3.394 18 O -0.520 6.520 19 C 0.077 3.923 20 C -0.210 4.210 21 C 0.232 3.768 22 N -0.420 5.420 23 N -0.222 5.222 24 C 0.097 3.903 25 C 0.041 3.959 26 O -0.281 6.281 27 C 0.113 3.887 28 C 0.154 3.846 29 H 0.029 0.971 30 H 0.248 0.752 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.124 0.876 38 H 0.063 0.937 39 H 0.165 0.835 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.128 0.872 44 H 0.058 0.942 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.816 -10.968 16.185 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.732 3.268 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.341 4.341 8 H 0.099 0.901 9 N -0.315 5.315 10 C 0.055 3.945 11 C -0.182 4.182 12 C -0.122 4.122 13 H 0.092 0.908 14 C -0.155 4.155 15 C -0.040 4.040 16 N -0.310 5.310 17 C 0.391 3.609 18 O -0.393 6.393 19 C -0.090 4.090 20 C -0.240 4.240 21 C 0.064 3.936 22 N -0.215 5.215 23 N -0.051 5.051 24 C -0.024 4.024 25 C -0.036 4.036 26 O -0.188 6.188 27 C -0.010 4.010 28 C 0.045 3.955 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.140 0.860 38 H 0.081 0.919 39 H 0.182 0.818 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.146 0.854 44 H 0.076 0.924 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.500 -11.230 16.077 19.668 hybrid contribution 0.487 1.501 0.188 1.590 sum 1.987 -9.729 16.265 19.056 Atomic orbital electron populations 1.69965 1.04817 1.24652 1.58018 1.24697 0.95571 0.97436 1.02658 0.86232 0.79216 0.83807 0.77525 1.21772 1.21997 1.20111 1.19047 0.90592 0.82066 1.42423 0.90064 1.44303 1.01419 0.99275 1.86482 1.21193 0.84343 0.88254 1.00706 1.23149 0.96127 0.99752 0.99140 1.22389 0.97052 0.97673 0.95068 0.90780 1.21761 0.95821 1.03061 0.94889 1.22504 0.89330 0.91998 1.00207 1.47598 1.42401 1.33000 1.07957 1.16673 0.81484 0.80129 0.82652 1.90794 1.33166 1.46241 1.69139 1.22126 0.96262 0.95458 0.95112 1.20062 1.11059 1.06426 0.86462 1.20732 0.95601 0.89492 0.87742 1.51015 1.36409 1.26232 1.07865 1.77417 1.22090 1.21296 0.84281 1.23201 1.02108 0.99639 0.77405 1.24430 0.88036 0.93756 0.97342 1.87120 1.42549 1.70601 1.18505 1.21495 0.99134 1.01745 0.78587 1.20738 0.91062 0.87921 0.95772 0.95380 0.94136 0.94154 0.93827 0.92775 0.92413 0.90357 0.92350 0.85963 0.91883 0.81777 0.87059 0.87905 0.88827 0.85382 0.92402 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.02 10.38 55.49 0.58 -27.44 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.90 23.72 29.55 -169.99 -5.02 18.69 16 4 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 5 H -0.29 -7.75 7.11 56.52 0.40 -7.34 16 6 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.21 -6.07 9.70 -15.06 -0.15 -6.22 16 8 H 0.08 2.36 6.51 -52.48 -0.34 2.02 16 9 N -0.59 -14.94 3.21 -164.39 -0.53 -15.46 16 10 C 0.18 4.38 4.63 -2.74 -0.01 4.37 16 11 C -0.14 -2.67 6.34 -24.32 -0.15 -2.82 16 12 C -0.10 -1.76 3.63 -88.42 -0.32 -2.08 16 13 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 14 C -0.12 -1.97 5.06 -26.77 -0.14 -2.10 16 15 C 0.08 1.33 6.39 -3.73 -0.02 1.31 16 16 N -0.58 -11.05 2.94 -175.18 -0.52 -11.56 16 17 C 0.61 12.67 7.72 -12.38 -0.10 12.57 16 18 O -0.52 -12.33 16.39 5.30 0.09 -12.25 16 19 C 0.08 1.43 6.89 -82.96 -0.57 0.85 16 20 C -0.21 -3.62 10.60 -39.30 -0.42 -4.04 16 21 C 0.23 3.39 8.32 -16.54 -0.14 3.25 16 22 N -0.42 -5.67 5.01 -59.63 -0.30 -5.97 16 23 N -0.22 -3.64 9.09 33.32 0.30 -3.34 16 24 C 0.10 0.71 8.10 -2.67 -0.02 0.69 16 25 C 0.04 0.25 8.08 38.02 0.31 0.56 16 26 O -0.28 -3.27 11.19 -20.13 -0.23 -3.49 16 27 C 0.11 2.19 5.64 -4.76 -0.03 2.17 16 28 C 0.15 3.14 2.97 -68.28 -0.20 2.94 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.04 1.10 7.57 -51.93 -0.39 0.70 16 32 H 0.04 1.19 7.09 -51.93 -0.37 0.82 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.98 7.99 -51.93 -0.42 0.57 16 35 H 0.08 1.64 6.96 -51.93 -0.36 1.28 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.12 1.96 3.80 -101.90 -0.39 1.57 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.16 2.73 8.06 -52.49 -0.42 2.31 16 40 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.13 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.10 2.14 5.57 -51.93 -0.29 1.85 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -35.98 351.93 -8.72 -44.70 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.34 Total: -0.29 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -2.06 Total: 11.11 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: -0.46 Total: -63.77 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.14 Total: -15.74 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -5.02 Total: 18.69 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.98 -8.72 -44.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042096350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.443 kcal (2) G-P(sol) polarization free energy of solvation -35.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds