Wall clock time and date at job start Tue Mar 31 2020 16:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00453 * 2 1 4 4 H 1.48507 * 109.47006 * 269.99839 * 3 2 1 5 5 H 1.48508 * 109.47272 * 29.99508 * 3 2 1 6 6 H 1.48503 * 109.47448 * 149.99622 * 3 2 1 7 7 C 1.38818 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99630 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00265 * 0.02562 * 7 2 1 10 10 C 1.47434 * 126.05858 * 359.97112 * 9 7 2 11 11 C 1.54504 * 107.14743 * 181.63620 * 10 9 7 12 12 C 1.56035 * 102.60691 * 22.85850 * 11 10 9 13 13 H 1.09008 * 112.86016 * 202.91662 * 12 11 10 14 14 C 1.53091 * 107.06663 * 78.60399 * 12 11 10 15 15 C 1.52842 * 110.57542 * 195.09722 * 14 12 11 16 16 N 1.47222 * 107.31885 * 58.48267 * 15 14 12 17 17 C 1.34777 * 121.79177 * 122.31734 * 16 15 14 18 18 O 1.21572 * 120.00311 * 172.95271 * 17 16 15 19 19 C 1.47722 * 119.99797 * 352.95947 * 17 16 15 20 20 C 1.40940 * 125.97381 * 185.05462 * 19 17 16 21 21 C 1.36171 * 107.95285 * 180.08140 * 20 19 17 22 22 N 1.35808 * 107.31105 * 359.64516 * 21 20 19 23 23 N 1.31843 * 125.97369 * 4.74197 * 19 17 16 24 24 C 1.47430 * 108.06695 * 180.65697 * 22 21 20 25 25 C 1.54646 * 102.35493 * 15.25656 * 24 22 21 26 26 O 1.36124 * 140.88117 * 179.12664 * 21 20 19 27 27 C 1.46762 * 116.98035 * 301.00177 * 16 15 14 28 28 C 1.46467 * 126.06166 * 179.97438 * 9 7 2 29 29 H 1.09000 * 107.85967 * 269.61148 * 28 9 7 30 30 H 0.96998 * 119.99477 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.90337 * 62.26233 * 10 9 7 32 32 H 1.08998 * 109.90915 * 301.02136 * 10 9 7 33 33 H 1.08994 * 110.78336 * 264.57635 * 11 10 9 34 34 H 1.09001 * 110.94174 * 141.20926 * 11 10 9 35 35 H 1.08997 * 109.25400 * 315.37665 * 14 12 11 36 36 H 1.08997 * 109.26062 * 74.81153 * 14 12 11 37 37 H 1.08992 * 109.76174 * 176.96238 * 15 14 12 38 38 H 1.09001 * 109.75562 * 297.66953 * 15 14 12 39 39 H 1.08002 * 126.02684 * 0.10129 * 20 19 17 40 40 H 1.09002 * 110.82703 * 133.47653 * 24 22 21 41 41 H 1.08996 * 110.82694 * 257.03974 * 24 22 21 42 42 H 1.09005 * 110.84764 * 93.34664 * 25 24 22 43 43 H 1.08995 * 110.85256 * 216.77485 * 25 24 22 44 44 H 1.09002 * 109.22428 * 293.52402 * 27 16 15 45 45 H 1.09000 * 109.22846 * 174.12074 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1407 -2.5437 0.0006 11 6 -0.4379 -4.0593 0.0427 12 6 0.8717 -4.6463 0.6550 13 1 1.0212 -5.6972 0.4069 14 6 0.8093 -4.4044 2.1654 15 6 2.1866 -4.6011 2.7983 16 7 3.1083 -3.6577 2.1442 17 6 3.8003 -2.7388 2.8464 18 8 4.6463 -2.0624 2.2944 19 6 3.5308 -2.5536 4.2870 20 6 4.1035 -1.5685 5.1165 21 6 3.6014 -1.7328 6.3715 22 7 2.7377 -2.7799 6.3273 23 7 2.7083 -3.2774 5.0204 24 6 2.1714 -2.9627 7.6762 25 6 2.5399 -1.6322 8.3729 26 8 3.6912 -1.2038 7.6225 27 6 3.2652 -3.7802 0.6901 28 6 1.9197 -3.7268 0.0005 29 1 2.0489 -4.0352 -1.0369 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5600 -2.1084 -0.9065 32 1 -0.5654 -2.0576 0.8789 33 1 -0.6038 -4.4489 -0.9616 34 1 -1.2934 -4.2708 0.6842 35 1 0.4700 -3.3856 2.3525 36 1 0.1046 -5.1051 2.6130 37 1 2.1388 -4.3736 3.8631 38 1 2.5137 -5.6311 2.6560 39 1 4.8149 -0.8156 4.8105 40 1 1.0897 -3.0888 7.6286 41 1 2.6392 -3.8075 8.1817 42 1 1.7283 -0.9101 8.2842 43 1 2.7953 -1.7999 9.4192 44 1 3.7489 -4.7295 0.4600 45 1 3.8877 -2.9627 0.3261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042096350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:59 Heat of formation + Delta-G solvation = 62.541769 kcal Electronic energy + Delta-G solvation = -30285.121681 eV Core-core repulsion = 26306.410102 eV Total energy + Delta-G solvation = -3978.711579 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.38902 -41.42038 -39.95636 -39.07274 -36.60737 -34.66802 -34.30672 -32.86450 -31.58475 -30.42883 -30.01357 -29.84800 -26.60792 -26.29061 -24.64344 -23.93649 -23.29528 -22.53458 -21.72174 -20.96346 -19.75045 -18.67723 -18.46429 -18.15724 -17.55888 -17.12278 -16.70852 -16.62291 -16.21031 -16.07578 -15.88291 -15.62247 -15.17245 -15.06557 -14.55912 -14.40430 -14.30467 -14.13537 -13.95979 -13.72643 -13.22427 -13.14225 -13.13285 -12.95993 -12.67068 -12.64752 -12.37313 -12.22817 -12.07311 -11.85563 -11.65863 -11.40171 -11.32905 -11.19970 -10.71972 -10.64866 -10.27527 -9.70815 -9.53827 -8.79273 -7.83092 -5.12760 0.12931 0.76309 0.96183 1.36384 1.37831 1.49884 1.65056 2.17360 2.32720 2.48867 2.98968 3.34301 3.35800 3.55500 3.76209 3.85537 3.89827 3.98028 4.06969 4.14519 4.24009 4.33196 4.37642 4.47035 4.49844 4.52770 4.61644 4.63671 4.67133 4.73981 4.76973 4.89761 4.94233 5.01843 5.13414 5.17943 5.28083 5.34016 5.54054 5.65289 5.70276 5.74015 5.80733 5.83011 6.24340 6.30855 6.49637 7.08999 7.16206 7.84523 8.47826 9.27746 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011282 B = 0.004938 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.318884 B = 5669.435024 C = 6759.673041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.952 3.048 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.285 1.285 7 C -0.205 4.205 8 H 0.068 0.932 9 N -0.607 5.607 10 C 0.187 3.813 11 C -0.128 4.128 12 C -0.085 4.085 13 H 0.125 0.875 14 C -0.111 4.111 15 C 0.082 3.918 16 N -0.579 5.579 17 C 0.594 3.406 18 O -0.568 6.568 19 C 0.050 3.950 20 C -0.248 4.248 21 C 0.245 3.755 22 N -0.410 5.410 23 N -0.221 5.221 24 C 0.087 3.913 25 C 0.037 3.963 26 O -0.290 6.290 27 C 0.115 3.885 28 C 0.142 3.858 29 H 0.036 0.964 30 H 0.242 0.758 31 H 0.000 1.000 32 H 0.003 0.997 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.027 0.973 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.103 0.897 39 H 0.152 0.848 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.103 0.897 43 H 0.176 0.824 44 H 0.101 0.899 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 -14.338 18.739 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.257 4.257 3 Si 0.782 3.218 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.334 4.334 8 H 0.086 0.914 9 N -0.332 5.332 10 C 0.062 3.938 11 C -0.167 4.167 12 C -0.104 4.104 13 H 0.143 0.857 14 C -0.149 4.149 15 C -0.040 4.040 16 N -0.309 5.309 17 C 0.380 3.620 18 O -0.446 6.446 19 C -0.114 4.114 20 C -0.278 4.278 21 C 0.075 3.925 22 N -0.207 5.207 23 N -0.052 5.052 24 C -0.031 4.031 25 C -0.038 4.038 26 O -0.197 6.197 27 C -0.008 4.008 28 C 0.035 3.965 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.018 0.982 32 H 0.021 0.979 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.046 0.954 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.121 0.879 39 H 0.170 0.830 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.121 0.879 43 H 0.193 0.807 44 H 0.119 0.881 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.639 -14.660 18.657 23.736 hybrid contribution 0.721 2.506 -0.431 2.643 sum 1.360 -12.153 18.226 21.949 Atomic orbital electron populations 1.70152 1.05616 1.24465 1.59809 1.25317 0.96367 0.99980 1.04053 0.85436 0.77652 0.81082 0.77599 1.20889 1.21937 1.21061 1.19122 0.90238 0.83765 1.40303 0.91416 1.44504 1.02203 1.00420 1.86074 1.20945 0.83588 0.92378 0.96848 1.23011 0.97861 0.94773 1.01010 1.22452 0.94021 0.99234 0.94724 0.85705 1.21706 0.97061 1.01112 0.95047 1.22758 0.88136 0.93054 1.00051 1.47777 1.42315 1.32969 1.07869 1.17127 0.81191 0.79838 0.83845 1.90742 1.35338 1.48014 1.70468 1.21768 0.98189 0.97123 0.94355 1.20063 1.12450 1.07107 0.88205 1.20562 0.94455 0.89469 0.88012 1.51453 1.35607 1.25112 1.08531 1.77232 1.21246 1.21121 0.85582 1.23861 1.03775 1.01343 0.74156 1.24973 0.86749 0.93274 0.98775 1.87142 1.44864 1.70531 1.17116 1.21449 0.98108 1.02383 0.78901 1.21071 0.92571 0.86162 0.96725 0.94691 0.94887 0.98196 0.97875 0.91005 0.90188 0.95388 0.88428 0.85832 0.87872 0.83024 0.84737 0.84783 0.87861 0.80705 0.88091 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.45 10.38 21.65 0.22 -60.22 16 2 C -0.06 -4.00 5.49 84.86 0.47 -3.53 16 3 Si 0.95 51.29 29.55 68.60 2.03 53.32 16 4 H -0.28 -14.65 7.11 99.48 0.71 -13.94 16 5 H -0.29 -15.60 7.11 99.48 0.71 -14.89 16 6 H -0.28 -15.58 7.11 99.48 0.71 -14.88 16 7 C -0.20 -12.25 9.70 84.04 0.81 -11.44 16 8 H 0.07 4.19 6.51 -2.91 -0.02 4.17 16 9 N -0.61 -31.68 3.21 -674.02 -2.16 -33.84 16 10 C 0.19 9.42 4.63 86.71 0.40 9.82 16 11 C -0.13 -4.48 6.34 32.16 0.20 -4.28 16 12 C -0.09 -2.61 3.63 -9.37 -0.03 -2.64 16 13 H 0.13 2.76 8.14 -2.38 -0.02 2.74 16 14 C -0.11 -3.40 5.06 30.57 0.15 -3.25 16 15 C 0.08 2.40 6.39 86.19 0.55 2.95 16 16 N -0.58 -22.02 2.94 -826.41 -2.43 -24.45 16 17 C 0.59 25.99 7.72 86.75 0.67 26.66 16 18 O -0.57 -28.98 16.39 -3.94 -0.06 -29.04 16 19 C 0.05 1.93 6.89 42.31 0.29 2.22 16 20 C -0.25 -8.99 10.60 22.45 0.24 -8.75 16 21 C 0.24 7.01 8.32 83.60 0.70 7.71 16 22 N -0.41 -10.29 5.01 -453.33 -2.27 -12.56 16 23 N -0.22 -7.08 9.09 -48.51 -0.44 -7.53 16 24 C 0.09 0.91 8.10 86.76 0.70 1.61 16 25 C 0.04 0.31 8.08 72.54 0.59 0.90 16 26 O -0.29 -6.15 11.19 -94.96 -1.06 -7.21 16 27 C 0.11 4.39 5.64 85.77 0.48 4.87 16 28 C 0.14 5.64 2.97 44.78 0.13 5.77 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.24 15.08 8.31 -92.71 -0.77 14.31 16 31 H 0.00 -0.01 7.57 -2.39 -0.02 -0.03 16 32 H 0.00 0.17 7.09 -2.39 -0.02 0.16 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 34 H 0.08 2.47 7.99 -2.39 -0.02 2.45 16 35 H 0.03 1.14 6.96 -2.39 -0.02 1.13 16 36 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.13 3.69 3.80 -67.74 -0.26 3.43 16 38 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.15 5.61 8.06 -2.91 -0.02 5.58 16 40 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.18 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 45 H 0.06 2.66 5.57 -2.39 -0.01 2.64 16 Total: -1.00 -87.88 351.93 0.95 -86.93 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 0.77 Total: 6.01 kcal Atomic # 6 Polarization: 22.25 SS G_CDS: 6.36 Total: 28.61 kcal Atomic # 7 Polarization: -131.53 SS G_CDS: -7.08 Total: -138.61 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -1.13 Total: -36.25 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.03 Total: 53.32 kcal Total: -87.88 0.95 -86.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042096350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.471 kcal (2) G-P(sol) polarization free energy of solvation -87.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds