Wall clock time and date at job start Tue Mar 31 2020 16:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00216 * 2 1 4 4 H 1.48491 * 109.47175 * 239.99739 * 3 2 1 5 5 H 1.48503 * 109.46884 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46999 * 119.99373 * 3 2 1 7 7 C 1.38820 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99566 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00158 * 0.02562 * 7 2 1 10 10 C 1.46640 * 125.33154 * 0.02562 * 9 7 2 11 11 C 1.53687 * 108.01490 * 180.81920 * 10 9 7 12 12 H 1.08999 * 113.05265 * 253.81109 * 11 10 9 13 13 C 1.53723 * 109.34683 * 127.55361 * 11 10 9 14 14 N 1.46674 * 107.94224 * 266.25703 * 13 11 10 15 15 C 1.34777 * 125.33431 * 180.54699 * 14 13 11 16 16 O 1.21573 * 120.00277 * 359.97438 * 15 14 13 17 17 C 1.47718 * 119.99848 * 179.71981 * 15 14 13 18 18 C 1.41289 * 125.95450 * 180.26838 * 17 15 14 19 19 C 1.34861 * 107.70724 * 179.97438 * 18 17 15 20 20 N 1.36392 * 107.92138 * 0.09577 * 19 18 17 21 21 N 1.32128 * 125.94980 * 359.96833 * 17 15 14 22 22 C 1.46724 * 123.61728 * 179.79148 * 20 19 18 23 23 C 1.53524 * 107.96192 * 343.04069 * 22 20 19 24 24 C 1.53230 * 109.29918 * 47.29460 * 23 22 20 25 25 O 1.36035 * 128.63470 * 180.20796 * 19 18 17 26 26 C 1.46773 * 109.32210 * 0.80398 * 14 13 11 27 27 C 1.54160 * 106.52998 * 341.09430 * 26 14 13 28 28 H 1.09003 * 113.83077 * 265.68172 * 27 26 14 29 29 C 1.46741 * 125.32985 * 180.02562 * 9 7 2 30 30 H 0.96995 * 120.00216 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.76472 * 61.16851 * 10 9 7 32 32 H 1.09005 * 109.76115 * 300.45673 * 10 9 7 33 33 H 1.08994 * 109.77218 * 146.63108 * 13 11 10 34 34 H 1.09000 * 109.77117 * 25.87524 * 13 11 10 35 35 H 1.07999 * 126.14775 * 359.97103 * 18 17 15 36 36 H 1.09002 * 109.76437 * 102.66275 * 22 20 19 37 37 H 1.09005 * 109.76284 * 223.42129 * 22 20 19 38 38 H 1.09001 * 109.50029 * 167.23748 * 23 22 20 39 39 H 1.08999 * 109.49980 * 287.31198 * 23 22 20 40 40 H 1.08996 * 109.50008 * 55.34406 * 24 23 22 41 41 H 1.08994 * 109.50049 * 175.42212 * 24 23 22 42 42 H 1.09000 * 110.02469 * 100.51722 * 26 14 13 43 43 H 1.08998 * 110.02643 * 221.92853 * 26 14 13 44 44 H 1.09001 * 110.00904 * 42.36633 * 29 9 7 45 45 H 1.08998 * 110.01207 * 280.99089 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1344 -2.5243 -0.0005 11 6 -0.4719 -4.0235 0.0208 12 1 -0.8364 -4.3926 -0.9379 13 6 -1.4486 -4.3093 1.1729 14 7 -0.6614 -4.7115 2.3434 15 6 -1.1691 -5.0525 3.5444 16 8 -2.3717 -5.0409 3.7216 17 6 -0.2643 -5.4458 4.6439 18 6 -0.6583 -5.8301 5.9452 19 6 0.4591 -6.1113 6.6458 20 7 1.5302 -5.9126 5.8251 21 7 1.0541 -5.5048 4.5801 22 6 2.9221 -6.1154 6.2426 23 6 2.9563 -6.1472 7.7771 24 6 1.8488 -7.0741 8.2892 25 8 0.5705 -6.5248 7.9370 26 6 0.7660 -4.6783 2.0033 27 6 0.8510 -4.7080 0.4643 28 1 0.9783 -5.7080 0.0495 29 6 1.9381 -3.7216 0.0016 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5467 -2.0664 -0.8997 32 1 -0.5504 -2.0404 0.8832 33 1 -2.1268 -5.1144 0.8902 34 1 -2.0196 -3.4101 1.4039 35 1 -1.6722 -5.8882 6.3127 36 1 3.2919 -7.0609 5.8459 37 1 3.5398 -5.2950 5.8771 38 1 3.9250 -6.5184 8.1119 39 1 2.7980 -5.1412 8.1656 40 1 1.9593 -8.0587 7.8350 41 1 1.9211 -7.1632 9.3731 42 1 1.2201 -3.7649 2.3875 43 1 1.2695 -5.5502 2.4208 44 1 2.7809 -3.7443 0.6925 45 1 2.2720 -3.9795 -1.0034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048930650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:07 Heat of formation + Delta-G solvation = 56.419220 kcal Electronic energy + Delta-G solvation = -29163.654346 eV Core-core repulsion = 25184.677274 eV Total energy + Delta-G solvation = -3978.977072 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.95221 -40.03310 -38.77734 -37.81153 -34.97580 -34.87004 -32.29760 -31.34916 -30.13253 -29.53863 -29.34507 -26.92856 -25.58806 -25.37852 -24.14157 -23.17788 -21.78692 -20.22317 -19.99845 -19.34294 -19.19423 -18.01239 -17.03890 -16.75587 -16.39365 -16.10729 -15.65228 -15.27280 -15.19893 -14.89890 -14.65059 -14.40136 -14.14197 -13.70935 -13.55426 -13.06271 -12.94022 -12.68802 -12.60093 -12.03128 -11.97866 -11.93657 -11.71095 -11.59072 -11.43413 -11.36321 -10.87492 -10.84213 -10.70946 -10.36248 -10.08766 -10.01287 -9.86313 -9.75074 -9.58563 -9.28486 -8.58520 -8.56698 -8.21709 -6.79811 -5.69035 -3.02594 1.35011 1.94761 2.10647 2.66814 3.31432 3.41850 3.45964 3.47772 3.56335 3.75838 3.97227 4.30180 4.36839 4.51824 4.59781 4.73641 4.84851 4.93741 5.02376 5.09381 5.25714 5.27524 5.35579 5.38892 5.54365 5.67947 5.73005 5.76159 5.83280 5.84439 6.02558 6.10895 6.27508 6.30494 6.37885 6.51047 6.62766 6.66865 6.70960 6.89162 7.03364 7.31165 7.59137 7.62566 7.80603 7.85416 8.30070 8.37343 9.25083 9.85759 10.49831 11.42361 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.003337 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.669000 B = 8388.129727 C = 9310.028854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.184 3.816 11 C -0.123 4.123 12 H 0.092 0.908 13 C 0.121 3.879 14 N -0.591 5.591 15 C 0.609 3.391 16 O -0.534 6.534 17 C 0.061 3.939 18 C -0.226 4.226 19 C 0.259 3.741 20 N -0.396 5.396 21 N -0.233 5.233 22 C 0.128 3.872 23 C -0.176 4.176 24 C 0.050 3.950 25 O -0.287 6.287 26 C 0.117 3.883 27 C -0.113 4.113 28 H 0.089 0.911 29 C 0.147 3.853 30 H 0.253 0.747 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.165 0.835 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.037 0.963 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.785 -17.031 13.920 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.060 3.940 11 C -0.143 4.143 12 H 0.110 0.890 13 C -0.001 4.001 14 N -0.323 5.323 15 C 0.394 3.606 16 O -0.410 6.410 17 C -0.107 4.107 18 C -0.256 4.256 19 C 0.094 3.906 20 N -0.194 5.194 21 N -0.063 5.063 22 C 0.007 3.993 23 C -0.214 4.214 24 C -0.026 4.026 25 O -0.194 6.194 26 C -0.006 4.006 27 C -0.133 4.133 28 H 0.107 0.893 29 C 0.020 3.980 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.183 0.817 36 H 0.109 0.891 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.137 0.863 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.055 0.945 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 5.993 -16.665 13.628 22.347 hybrid contribution 0.228 0.791 0.575 1.004 sum 6.222 -15.875 14.204 22.191 Atomic orbital electron populations 1.69944 1.04837 1.25175 1.56799 1.24796 0.95702 0.97645 1.02144 0.86208 0.78451 0.83319 0.77813 1.21193 1.21608 1.21263 1.18975 0.90375 0.82358 1.44142 0.90499 1.44190 1.01507 0.99924 1.87215 1.21118 0.84554 0.86809 1.01546 1.23166 0.93915 1.00505 0.96718 0.89026 1.21888 0.93908 1.00071 0.84238 1.48081 1.09165 1.64543 1.10511 1.16428 0.86144 0.77969 0.80040 1.90788 1.13939 1.54696 1.81547 1.21920 0.91160 1.02502 0.95092 1.20161 0.97926 1.15559 0.91968 1.19417 0.88529 0.99575 0.83120 1.49412 1.06120 1.54900 1.08950 1.77823 1.10221 1.20011 0.98242 1.21965 0.78626 1.04368 0.94344 1.22647 1.01583 1.02813 0.94365 1.23101 0.80811 0.96103 1.02559 1.86651 1.34839 1.76991 1.20923 1.22244 0.80588 1.02869 0.94889 1.22978 0.97120 0.99005 0.94157 0.89305 1.21144 0.93776 0.85723 0.97362 0.93661 0.93717 0.93053 0.91947 0.90530 0.81750 0.89127 0.87593 0.87114 0.89120 0.90948 0.86283 0.90220 0.90290 0.94473 0.96321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.09 10.25 55.49 0.57 -26.52 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.23 -6.36 10.25 -15.06 -0.15 -6.52 16 8 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 9 N -0.60 -15.09 3.37 -171.95 -0.58 -15.67 16 10 C 0.18 4.42 4.75 -3.61 -0.02 4.40 16 11 C -0.12 -2.27 4.02 -88.60 -0.36 -2.62 16 12 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 13 C 0.12 2.19 6.23 -3.57 -0.02 2.16 16 14 N -0.59 -10.88 3.31 -173.33 -0.57 -11.45 16 15 C 0.61 11.53 7.84 -12.39 -0.10 11.43 16 16 O -0.53 -11.21 17.21 5.30 0.09 -11.12 16 17 C 0.06 1.02 6.94 -82.71 -0.57 0.45 16 18 C -0.23 -3.42 10.58 -39.62 -0.42 -3.84 16 19 C 0.26 3.37 7.57 -16.72 -0.13 3.25 16 20 N -0.40 -4.94 4.08 -60.93 -0.25 -5.19 16 21 N -0.23 -3.63 9.78 33.43 0.33 -3.31 16 22 C 0.13 0.95 7.41 -3.65 -0.03 0.92 16 23 C -0.18 -0.84 6.16 -26.34 -0.16 -1.00 16 24 C 0.05 0.28 7.00 37.28 0.26 0.54 16 25 O -0.29 -3.02 10.65 -19.85 -0.21 -3.24 16 26 C 0.12 2.04 5.19 -3.29 -0.02 2.02 16 27 C -0.11 -1.92 4.19 -88.25 -0.37 -2.29 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 29 C 0.15 2.93 6.37 -3.43 -0.02 2.91 16 30 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.04 1.19 7.46 -51.93 -0.39 0.80 16 32 H 0.05 1.40 6.51 -51.93 -0.34 1.06 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.51 7.44 -51.93 -0.39 1.12 16 35 H 0.16 2.33 8.06 -52.49 -0.42 1.91 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.11 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.12 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 1.63 7.72 -51.93 -0.40 1.23 16 43 H 0.08 1.26 6.44 -51.93 -0.33 0.93 16 44 H 0.04 0.73 7.94 -51.93 -0.41 0.31 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 358.62 15.07 5.40 5.40 Total: -1.00 -34.56 358.62 -8.90 -43.46 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.45 Total: -1.08 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: -2.20 Total: 11.54 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -0.51 Total: -62.14 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.12 Total: -14.36 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.56 -8.90 -43.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048930650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.882 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds