Wall clock time and date at job start Tue Mar 31 2020 16:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00216 * 2 1 4 4 H 1.48491 * 109.47175 * 239.99739 * 3 2 1 5 5 H 1.48503 * 109.46884 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46999 * 119.99373 * 3 2 1 7 7 C 1.38820 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99566 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00158 * 0.02562 * 7 2 1 10 10 C 1.46640 * 125.33154 * 0.02562 * 9 7 2 11 11 C 1.53687 * 108.01490 * 180.81920 * 10 9 7 12 12 H 1.08999 * 113.05265 * 253.81109 * 11 10 9 13 13 C 1.53723 * 109.34683 * 127.55361 * 11 10 9 14 14 N 1.46674 * 107.94224 * 266.25703 * 13 11 10 15 15 C 1.34777 * 125.33431 * 180.54699 * 14 13 11 16 16 O 1.21573 * 120.00277 * 359.97438 * 15 14 13 17 17 C 1.47718 * 119.99848 * 179.71981 * 15 14 13 18 18 C 1.41289 * 125.95450 * 180.26838 * 17 15 14 19 19 C 1.34861 * 107.70724 * 179.97438 * 18 17 15 20 20 N 1.36392 * 107.92138 * 0.09577 * 19 18 17 21 21 N 1.32128 * 125.94980 * 359.96833 * 17 15 14 22 22 C 1.46724 * 123.61728 * 179.79148 * 20 19 18 23 23 C 1.53524 * 107.96192 * 343.04069 * 22 20 19 24 24 C 1.53230 * 109.29918 * 47.29460 * 23 22 20 25 25 O 1.36035 * 128.63470 * 180.20796 * 19 18 17 26 26 C 1.46773 * 109.32210 * 0.80398 * 14 13 11 27 27 C 1.54160 * 106.52998 * 341.09430 * 26 14 13 28 28 H 1.09003 * 113.83077 * 265.68172 * 27 26 14 29 29 C 1.46741 * 125.32985 * 180.02562 * 9 7 2 30 30 H 0.96995 * 120.00216 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.76472 * 61.16851 * 10 9 7 32 32 H 1.09005 * 109.76115 * 300.45673 * 10 9 7 33 33 H 1.08994 * 109.77218 * 146.63108 * 13 11 10 34 34 H 1.09000 * 109.77117 * 25.87524 * 13 11 10 35 35 H 1.07999 * 126.14775 * 359.97103 * 18 17 15 36 36 H 1.09002 * 109.76437 * 102.66275 * 22 20 19 37 37 H 1.09005 * 109.76284 * 223.42129 * 22 20 19 38 38 H 1.09001 * 109.50029 * 167.23748 * 23 22 20 39 39 H 1.08999 * 109.49980 * 287.31198 * 23 22 20 40 40 H 1.08996 * 109.50008 * 55.34406 * 24 23 22 41 41 H 1.08994 * 109.50049 * 175.42212 * 24 23 22 42 42 H 1.09000 * 110.02469 * 100.51722 * 26 14 13 43 43 H 1.08998 * 110.02643 * 221.92853 * 26 14 13 44 44 H 1.09001 * 110.00904 * 42.36633 * 29 9 7 45 45 H 1.08998 * 110.01207 * 280.99089 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1344 -2.5243 -0.0005 11 6 -0.4719 -4.0235 0.0208 12 1 -0.8364 -4.3926 -0.9379 13 6 -1.4486 -4.3093 1.1729 14 7 -0.6614 -4.7115 2.3434 15 6 -1.1691 -5.0525 3.5444 16 8 -2.3717 -5.0409 3.7216 17 6 -0.2643 -5.4458 4.6439 18 6 -0.6583 -5.8301 5.9452 19 6 0.4591 -6.1113 6.6458 20 7 1.5302 -5.9126 5.8251 21 7 1.0541 -5.5048 4.5801 22 6 2.9221 -6.1154 6.2426 23 6 2.9563 -6.1472 7.7771 24 6 1.8488 -7.0741 8.2892 25 8 0.5705 -6.5248 7.9370 26 6 0.7660 -4.6783 2.0033 27 6 0.8510 -4.7080 0.4643 28 1 0.9783 -5.7080 0.0495 29 6 1.9381 -3.7216 0.0016 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5467 -2.0664 -0.8997 32 1 -0.5504 -2.0404 0.8832 33 1 -2.1268 -5.1144 0.8902 34 1 -2.0196 -3.4101 1.4039 35 1 -1.6722 -5.8882 6.3127 36 1 3.2919 -7.0609 5.8459 37 1 3.5398 -5.2950 5.8771 38 1 3.9250 -6.5184 8.1119 39 1 2.7980 -5.1412 8.1656 40 1 1.9593 -8.0587 7.8350 41 1 1.9211 -7.1632 9.3731 42 1 1.2201 -3.7649 2.3875 43 1 1.2695 -5.5502 2.4208 44 1 2.7809 -3.7443 0.6925 45 1 2.2720 -3.9795 -1.0034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048930650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:06 Heat of formation + Delta-G solvation = 31.743045 kcal Electronic energy + Delta-G solvation = -29164.724385 eV Core-core repulsion = 25184.677274 eV Total energy + Delta-G solvation = -3980.047112 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.94164 -41.47216 -39.88931 -39.14875 -36.60944 -35.67267 -34.15429 -32.53633 -31.45359 -31.10644 -30.58524 -27.97497 -27.12720 -26.94846 -25.46973 -24.24666 -23.11230 -21.79657 -20.96473 -20.72837 -20.50486 -19.19992 -18.70851 -18.00021 -17.59672 -17.11594 -16.81253 -16.61500 -16.28893 -16.19864 -15.85976 -15.70662 -15.51279 -15.09279 -14.68559 -14.49844 -14.35633 -14.20530 -13.66236 -13.52319 -13.36785 -13.27566 -13.05115 -12.73285 -12.67539 -12.64510 -12.38693 -12.12055 -12.02555 -11.89650 -11.88252 -11.84819 -11.47414 -11.34792 -11.28889 -10.66989 -10.30376 -9.73349 -9.58293 -8.84927 -7.82967 -5.17775 0.15701 0.99437 1.04878 1.45039 1.48358 1.54649 1.70204 2.13961 2.22667 2.50719 2.96513 3.32033 3.35151 3.51896 3.56346 3.61953 3.84719 3.90828 3.96567 3.99864 4.14986 4.30219 4.30570 4.32699 4.42675 4.53214 4.53889 4.57556 4.63330 4.70290 4.78054 4.85320 4.92406 4.95381 5.03630 5.07177 5.10993 5.15159 5.34299 5.41249 5.49377 5.66356 5.79601 6.16635 6.19311 6.23428 6.37758 6.92455 7.13143 7.82745 8.44330 9.26916 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.003337 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.669000 B = 8388.129727 C = 9310.028854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.976 3.024 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.279 1.279 7 C -0.239 4.239 8 H 0.085 0.915 9 N -0.623 5.623 10 C 0.197 3.803 11 C -0.110 4.110 12 H 0.123 0.877 13 C 0.123 3.877 14 N -0.595 5.595 15 C 0.605 3.395 16 O -0.565 6.565 17 C 0.037 3.963 18 C -0.253 4.253 19 C 0.274 3.726 20 N -0.386 5.386 21 N -0.248 5.248 22 C 0.110 3.890 23 C -0.165 4.165 24 C 0.037 3.963 25 O -0.297 6.297 26 C 0.127 3.873 27 C -0.095 4.095 28 H 0.136 0.864 29 C 0.141 3.859 30 H 0.244 0.756 31 H 0.008 0.992 32 H 0.006 0.994 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.162 0.838 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.153 0.847 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.150 0.850 42 H 0.044 0.956 43 H 0.100 0.900 44 H 0.044 0.956 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.622 -19.581 14.956 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.199 1.199 5 H -0.225 1.225 6 H -0.205 1.205 7 C -0.368 4.368 8 H 0.103 0.897 9 N -0.349 5.349 10 C 0.072 3.928 11 C -0.130 4.130 12 H 0.140 0.860 13 C 0.001 3.999 14 N -0.326 5.326 15 C 0.392 3.608 16 O -0.443 6.443 17 C -0.128 4.128 18 C -0.283 4.283 19 C 0.107 3.893 20 N -0.184 5.184 21 N -0.079 5.079 22 C -0.008 4.008 23 C -0.203 4.203 24 C -0.037 4.037 25 O -0.205 6.205 26 C 0.005 3.995 27 C -0.114 4.114 28 H 0.154 0.846 29 C 0.016 3.984 30 H 0.053 0.947 31 H 0.026 0.974 32 H 0.024 0.976 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.180 0.820 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.171 0.829 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.118 0.882 44 H 0.062 0.938 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.892 -19.255 14.668 25.787 hybrid contribution -0.511 1.529 0.393 1.659 sum 8.381 -17.726 15.061 24.725 Atomic orbital electron populations 1.70196 1.06324 1.25116 1.58413 1.25644 0.96533 1.01052 1.02819 0.85183 0.77114 0.78988 0.78250 1.19944 1.22452 1.20506 1.19415 0.91062 0.83657 1.42714 0.89696 1.44491 1.02163 1.01319 1.86965 1.20779 0.84102 0.90284 0.97655 1.23037 0.95079 0.96525 0.98342 0.85954 1.21835 0.94075 0.99809 0.84206 1.48168 1.09563 1.64285 1.10589 1.16787 0.86191 0.77346 0.80488 1.90749 1.15320 1.56108 1.82127 1.21617 0.91601 1.04511 0.95118 1.20228 0.98879 1.17117 0.92048 1.19290 0.88020 0.98069 0.83961 1.49801 1.07834 1.53051 1.07734 1.77670 1.09493 1.20503 1.00268 1.22556 0.75968 1.05790 0.96473 1.22686 1.03366 1.02303 0.91992 1.23605 0.78883 0.96593 1.04635 1.86675 1.37911 1.76840 1.19049 1.22127 0.79995 1.02011 0.95365 1.23045 0.94623 1.00268 0.93486 0.84606 1.21360 0.94722 0.83975 0.98340 0.94653 0.97351 0.97594 0.89346 0.93391 0.82029 0.86593 0.87266 0.82890 0.90183 0.89507 0.83214 0.93769 0.88182 0.93811 0.94741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.75 10.25 21.65 0.22 -58.53 16 2 C -0.07 -3.91 5.48 84.86 0.47 -3.45 16 3 Si 0.98 46.57 29.55 68.60 2.03 48.59 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.24 -13.43 10.25 84.04 0.86 -12.57 16 8 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 9 N -0.62 -31.68 3.37 -697.91 -2.35 -34.03 16 10 C 0.20 9.81 4.75 86.58 0.41 10.23 16 11 C -0.11 -3.98 4.02 -9.49 -0.04 -4.02 16 12 H 0.12 3.72 8.14 -2.39 -0.02 3.70 16 13 C 0.12 4.49 6.23 86.59 0.54 5.03 16 14 N -0.59 -22.14 3.31 -820.56 -2.72 -24.86 16 15 C 0.60 23.64 7.84 86.75 0.68 24.32 16 16 O -0.57 -24.76 17.21 -3.95 -0.07 -24.83 16 17 C 0.04 1.28 6.94 42.36 0.29 1.57 16 18 C -0.25 -7.79 10.58 22.24 0.24 -7.55 16 19 C 0.27 6.87 7.57 83.21 0.63 7.50 16 20 N -0.39 -9.00 4.08 -457.16 -1.87 -10.87 16 21 N -0.25 -7.60 9.78 -48.15 -0.47 -8.07 16 22 C 0.11 1.30 7.41 86.51 0.64 1.94 16 23 C -0.17 -0.94 6.16 30.85 0.19 -0.75 16 24 C 0.04 0.28 7.00 72.06 0.50 0.78 16 25 O -0.30 -5.69 10.65 -93.94 -1.00 -6.69 16 26 C 0.13 4.36 5.19 86.72 0.45 4.81 16 27 C -0.09 -3.00 4.19 -9.26 -0.04 -3.04 16 28 H 0.14 3.19 8.14 -2.39 -0.02 3.17 16 29 C 0.14 5.43 6.37 86.64 0.55 5.98 16 30 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 31 H 0.01 0.46 7.46 -2.39 -0.02 0.45 16 32 H 0.01 0.34 6.51 -2.38 -0.02 0.33 16 33 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.05 2.02 7.44 -2.39 -0.02 2.00 16 35 H 0.16 4.84 8.06 -2.91 -0.02 4.81 16 36 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.15 -0.35 8.14 -2.39 -0.02 -0.37 16 39 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.04 1.83 7.72 -2.39 -0.02 1.82 16 43 H 0.10 3.02 6.44 -2.39 -0.02 3.00 16 44 H 0.04 1.63 7.94 -2.39 -0.02 1.61 16 45 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -80.80 358.62 1.16 -79.64 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.01 Total: 8.86 kcal Atomic # 6 Polarization: 24.41 SS G_CDS: 6.38 Total: 30.79 kcal Atomic # 7 Polarization: -129.18 SS G_CDS: -7.18 Total: -136.36 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -1.07 Total: -31.52 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -80.80 1.16 -79.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048930650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.383 kcal (2) G-P(sol) polarization free energy of solvation -80.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds