Wall clock time and date at job start Tue Mar 31 2020 16:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00058 * 2 1 4 4 H 1.48497 * 109.46971 * 269.99975 * 3 2 1 5 5 H 1.48493 * 109.47255 * 30.00134 * 3 2 1 6 6 H 1.48502 * 109.46847 * 150.00264 * 3 2 1 7 7 C 1.38812 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00432 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99535 * 359.97438 * 7 2 1 10 10 C 1.46778 * 125.33495 * 180.02562 * 9 7 2 11 11 C 1.53960 * 106.62572 * 161.48554 * 10 9 7 12 12 H 1.09005 * 113.01361 * 265.71609 * 11 10 9 13 13 C 1.54107 * 109.46443 * 138.17305 * 11 10 9 14 14 N 1.46747 * 106.62768 * 278.65941 * 13 11 10 15 15 C 1.34772 * 125.32831 * 161.56300 * 14 13 11 16 16 O 1.21279 * 120.00352 * 179.69104 * 15 14 13 17 17 C 1.50702 * 120.00296 * 359.68481 * 15 14 13 18 18 C 1.52999 * 109.47577 * 180.02562 * 17 15 14 19 19 N 1.46499 * 109.47527 * 180.02562 * 18 17 15 20 20 C 1.34745 * 120.03899 * 269.72967 * 19 18 17 21 21 N 1.30639 * 121.48965 * 180.27307 * 20 19 18 22 22 C 1.33520 * 121.50739 * 359.97438 * 21 20 19 23 23 C 1.36203 * 119.90771 * 359.97438 * 22 21 20 24 24 C 1.35024 * 120.04094 * 89.99865 * 19 18 17 25 25 O 1.21982 * 120.70688 * 359.70674 * 24 19 18 26 26 C 1.46632 * 109.34144 * 341.29160 * 14 13 11 27 27 C 1.53694 * 108.01079 * 1.08213 * 26 14 13 28 28 H 1.08998 * 112.56297 * 254.08766 * 27 26 14 29 29 C 1.46666 * 125.33898 * 359.97438 * 9 7 2 30 30 H 0.96998 * 119.99419 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.03102 * 42.19017 * 10 9 7 32 32 H 1.09000 * 110.02458 * 280.77743 * 10 9 7 33 33 H 1.08999 * 110.15709 * 159.31301 * 13 11 10 34 34 H 1.09006 * 109.95194 * 37.88706 * 13 11 10 35 35 H 1.09002 * 109.46614 * 60.00404 * 17 15 14 36 36 H 1.08996 * 109.47026 * 300.00543 * 17 15 14 37 37 H 1.09001 * 109.46861 * 59.99884 * 18 17 15 38 38 H 1.09003 * 109.46916 * 300.00472 * 18 17 15 39 39 H 1.07995 * 119.25831 * 0.24825 * 20 19 18 40 40 H 1.08000 * 120.04867 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.70303 * 180.02562 * 23 22 21 42 42 H 1.08999 * 109.76253 * 120.72438 * 26 14 13 43 43 H 1.09003 * 109.76275 * 241.44199 * 26 14 13 44 44 H 1.09006 * 109.76738 * 60.92921 * 29 9 7 45 45 H 1.08999 * 109.77351 * 300.16859 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.9380 -3.7220 -0.0005 11 6 0.8506 -4.7060 0.4679 12 1 0.8867 -4.9026 1.5395 13 6 0.9081 -5.9829 -0.3930 14 7 0.1870 -5.6842 -1.6358 15 6 0.2937 -6.3799 -2.7851 16 8 -0.3540 -6.0501 -3.7560 17 6 1.2179 -7.5676 -2.8641 18 6 1.1523 -8.1726 -4.2678 19 7 2.0503 -9.3276 -4.3444 20 6 3.3316 -9.1615 -4.7267 21 7 4.1553 -10.1721 -4.8098 22 6 3.7657 -11.4157 -4.5194 23 6 2.4832 -11.6510 -4.1257 24 6 1.5935 -10.5605 -4.0373 25 8 0.4363 -10.7273 -3.6891 26 6 -0.6726 -4.5144 -1.4293 27 6 -0.4703 -4.0246 0.0134 28 1 -1.3137 -4.2674 0.6596 29 6 -0.1348 -2.5245 0.0005 30 1 -0.4849 0.8401 0.0004 31 1 2.7833 -3.7447 0.6872 32 1 2.2678 -3.9813 -1.0066 33 1 0.4259 -6.8096 0.1286 34 1 1.9450 -6.2354 -0.6150 35 1 0.9127 -8.3148 -2.1314 36 1 2.2386 -7.2483 -2.6538 37 1 1.4576 -7.4253 -5.0002 38 1 0.1315 -8.4918 -4.4785 39 1 3.6856 -8.1707 -4.9702 40 1 4.4666 -12.2338 -4.5959 41 1 2.1543 -12.6517 -3.8873 42 1 -0.3956 -3.7255 -2.1286 43 1 -1.7157 -4.7920 -1.5814 44 1 -0.5489 -2.0621 -0.8955 45 1 -0.5492 -2.0460 0.8879 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049140047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:56 Heat of formation + Delta-G solvation = 10.823916 kcal Electronic energy + Delta-G solvation = -28383.560565 eV Core-core repulsion = 24402.606331 eV Total energy + Delta-G solvation = -3980.954233 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.16462 -40.33911 -38.44987 -37.92405 -36.03346 -35.07117 -32.43157 -31.69422 -31.34633 -30.16708 -29.70902 -26.56577 -25.58064 -25.27403 -24.63209 -23.37073 -22.47120 -20.25847 -19.47779 -19.27910 -18.73492 -18.07570 -17.48721 -16.90500 -16.45519 -16.42109 -16.13509 -15.22746 -15.05895 -14.84183 -14.76985 -14.65667 -13.82588 -13.71786 -13.45342 -13.36119 -13.28463 -13.11432 -12.83015 -12.64880 -12.14444 -11.86241 -11.78177 -11.69456 -11.49135 -10.96101 -10.94019 -10.85205 -10.52391 -10.43738 -10.40220 -10.17348 -10.07785 -9.98106 -9.83196 -9.72613 -8.89481 -8.67107 -8.48588 -6.89739 -5.77897 -3.11774 0.22254 1.48668 1.99773 2.59711 3.04027 3.26885 3.36557 3.41555 3.43530 3.68270 4.12529 4.18036 4.36902 4.43190 4.46889 4.55435 4.68848 4.83667 4.95378 5.00599 5.13177 5.18428 5.30834 5.37458 5.40197 5.47012 5.49380 5.53979 5.62953 5.70768 5.86405 5.93915 6.05514 6.19565 6.20976 6.26340 6.42028 6.53569 6.61513 6.74828 7.35587 7.47009 7.47617 7.50228 7.59609 7.74918 8.13674 8.20373 9.16296 9.76653 10.39988 11.33734 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020812 B = 0.002437 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.074265 B =11485.892557 C =12013.953769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.110 4.110 12 H 0.100 0.900 13 C 0.109 3.891 14 N -0.605 5.605 15 C 0.533 3.467 16 O -0.544 6.544 17 C -0.151 4.151 18 C 0.103 3.897 19 N -0.520 5.520 20 C 0.378 3.622 21 N -0.546 5.546 22 C 0.150 3.850 23 C -0.290 4.290 24 C 0.514 3.486 25 O -0.533 6.533 26 C 0.119 3.881 27 C -0.123 4.123 28 H 0.089 0.911 29 C 0.187 3.813 30 H 0.253 0.747 31 H 0.035 0.965 32 H 0.016 0.984 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.206 0.794 40 H 0.166 0.834 41 H 0.154 0.846 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.013 -20.591 -5.490 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.019 3.981 11 C -0.130 4.130 12 H 0.118 0.882 13 C -0.015 4.015 14 N -0.338 5.338 15 C 0.320 3.680 16 O -0.422 6.422 17 C -0.192 4.192 18 C -0.019 4.019 19 N -0.237 5.237 20 C 0.094 3.906 21 N -0.268 5.268 22 C 0.012 3.988 23 C -0.315 4.315 24 C 0.313 3.687 25 O -0.411 6.411 26 C -0.003 4.003 27 C -0.143 4.143 28 H 0.107 0.893 29 C 0.062 3.938 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.034 0.966 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.222 0.778 40 H 0.183 0.817 41 H 0.172 0.828 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.636 -20.374 -6.061 21.990 hybrid contribution -0.246 0.690 0.386 0.828 sum 5.390 -19.683 -5.675 21.182 Atomic orbital electron populations 1.69947 1.04884 1.25191 1.56886 1.24809 0.95746 0.97754 1.02019 0.86104 0.78565 0.83386 0.77605 1.21566 1.21631 1.20685 1.19030 0.90436 0.82297 1.44117 0.90411 1.44221 1.01449 0.99947 1.87235 1.21232 0.93832 0.85907 0.97139 1.22972 0.97267 0.93546 0.99185 0.88216 1.22022 0.96477 0.98021 0.84966 1.48241 1.44032 1.30469 1.11050 1.19735 0.82993 0.83446 0.81795 1.90728 1.46740 1.69405 1.35350 1.21913 1.01336 0.97292 0.98662 1.21832 0.96542 0.85862 0.97665 1.46956 1.12176 1.11237 1.53288 1.25177 0.79136 1.00513 0.85788 1.68442 1.33978 0.99707 1.24660 1.22695 0.94277 0.93840 0.87996 1.22969 0.95178 1.00663 1.12707 1.17392 0.89320 0.82503 0.79472 1.90986 1.18118 1.83797 1.48203 1.22006 0.93571 0.87020 0.97720 1.23155 0.97036 1.00141 0.93960 0.89284 1.21043 0.84597 0.86526 1.01652 0.93631 0.94673 0.96617 0.91685 0.90954 0.88109 0.88191 0.87307 0.86916 0.77779 0.81657 0.82790 0.90455 0.92060 0.93214 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.36 10.25 55.49 0.57 -25.79 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.23 -6.22 10.25 -15.05 -0.15 -6.37 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.60 3.38 -171.84 -0.58 -15.18 16 10 C 0.15 2.75 6.49 -3.39 -0.02 2.73 16 11 C -0.11 -1.65 4.16 -88.26 -0.37 -2.02 16 12 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 13 C 0.11 1.31 5.77 -3.33 -0.02 1.30 16 14 N -0.61 -8.79 3.30 -172.27 -0.57 -9.36 16 15 C 0.53 7.49 7.84 -10.99 -0.09 7.41 16 16 O -0.54 -9.48 16.29 5.56 0.09 -9.39 16 17 C -0.15 -1.46 5.05 -27.88 -0.14 -1.60 16 18 C 0.10 0.94 4.66 -4.04 -0.02 0.92 16 19 N -0.52 -4.41 2.57 -121.11 -0.31 -4.72 16 20 C 0.38 2.39 11.48 -90.53 -1.04 1.35 16 21 N -0.55 -4.09 10.39 -14.48 -0.15 -4.24 16 22 C 0.15 1.02 11.20 -17.55 -0.20 0.82 16 23 C -0.29 -2.45 10.07 -39.26 -0.40 -2.85 16 24 C 0.51 5.70 7.45 -15.10 -0.11 5.59 16 25 O -0.53 -8.00 16.78 4.93 0.08 -7.92 16 26 C 0.12 2.00 6.22 -3.61 -0.02 1.97 16 27 C -0.12 -2.09 4.01 -88.60 -0.36 -2.45 16 28 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 29 C 0.19 4.26 4.78 -3.57 -0.02 4.24 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.02 0.31 7.72 -51.93 -0.40 -0.09 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.75 7.43 -51.93 -0.39 0.36 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.10 0.74 7.88 -51.93 -0.41 0.34 16 37 H 0.11 0.80 7.97 -51.93 -0.41 0.39 16 38 H 0.11 1.30 7.42 -51.93 -0.39 0.91 16 39 H 0.21 0.53 8.02 -52.49 -0.42 0.11 16 40 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 42 H 0.08 1.53 7.30 -51.93 -0.38 1.16 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 1.28 6.73 -51.93 -0.35 0.93 16 45 H 0.05 1.25 7.38 -51.93 -0.38 0.86 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -35.26 367.71 -9.85 -45.11 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -6.46 Total: -1.43 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: -3.04 Total: 10.75 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -1.04 Total: -59.29 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.17 Total: -17.31 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.26 -9.85 -45.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049140047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.935 kcal (2) G-P(sol) polarization free energy of solvation -35.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds