Wall clock time and date at job start Tue Mar 31 2020 16:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00058 * 2 1 4 4 H 1.48497 * 109.46971 * 269.99975 * 3 2 1 5 5 H 1.48493 * 109.47255 * 30.00134 * 3 2 1 6 6 H 1.48502 * 109.46847 * 150.00264 * 3 2 1 7 7 C 1.38812 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00432 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99535 * 359.97438 * 7 2 1 10 10 C 1.46778 * 125.33495 * 180.02562 * 9 7 2 11 11 C 1.53960 * 106.62572 * 161.48554 * 10 9 7 12 12 H 1.09005 * 113.01361 * 265.71609 * 11 10 9 13 13 C 1.54107 * 109.46443 * 138.17305 * 11 10 9 14 14 N 1.46747 * 106.62768 * 278.65941 * 13 11 10 15 15 C 1.34772 * 125.32831 * 161.56300 * 14 13 11 16 16 O 1.21279 * 120.00352 * 179.69104 * 15 14 13 17 17 C 1.50702 * 120.00296 * 359.68481 * 15 14 13 18 18 C 1.52999 * 109.47577 * 180.02562 * 17 15 14 19 19 N 1.46499 * 109.47527 * 180.02562 * 18 17 15 20 20 C 1.34745 * 120.03899 * 269.72967 * 19 18 17 21 21 N 1.30639 * 121.48965 * 180.27307 * 20 19 18 22 22 C 1.33520 * 121.50739 * 359.97438 * 21 20 19 23 23 C 1.36203 * 119.90771 * 359.97438 * 22 21 20 24 24 C 1.35024 * 120.04094 * 89.99865 * 19 18 17 25 25 O 1.21982 * 120.70688 * 359.70674 * 24 19 18 26 26 C 1.46632 * 109.34144 * 341.29160 * 14 13 11 27 27 C 1.53694 * 108.01079 * 1.08213 * 26 14 13 28 28 H 1.08998 * 112.56297 * 254.08766 * 27 26 14 29 29 C 1.46666 * 125.33898 * 359.97438 * 9 7 2 30 30 H 0.96998 * 119.99419 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.03102 * 42.19017 * 10 9 7 32 32 H 1.09000 * 110.02458 * 280.77743 * 10 9 7 33 33 H 1.08999 * 110.15709 * 159.31301 * 13 11 10 34 34 H 1.09006 * 109.95194 * 37.88706 * 13 11 10 35 35 H 1.09002 * 109.46614 * 60.00404 * 17 15 14 36 36 H 1.08996 * 109.47026 * 300.00543 * 17 15 14 37 37 H 1.09001 * 109.46861 * 59.99884 * 18 17 15 38 38 H 1.09003 * 109.46916 * 300.00472 * 18 17 15 39 39 H 1.07995 * 119.25831 * 0.24825 * 20 19 18 40 40 H 1.08000 * 120.04867 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.70303 * 180.02562 * 23 22 21 42 42 H 1.08999 * 109.76253 * 120.72438 * 26 14 13 43 43 H 1.09003 * 109.76275 * 241.44199 * 26 14 13 44 44 H 1.09006 * 109.76738 * 60.92921 * 29 9 7 45 45 H 1.08999 * 109.77351 * 300.16859 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.9380 -3.7220 -0.0005 11 6 0.8506 -4.7060 0.4679 12 1 0.8867 -4.9026 1.5395 13 6 0.9081 -5.9829 -0.3930 14 7 0.1870 -5.6842 -1.6358 15 6 0.2937 -6.3799 -2.7851 16 8 -0.3540 -6.0501 -3.7560 17 6 1.2179 -7.5676 -2.8641 18 6 1.1523 -8.1726 -4.2678 19 7 2.0503 -9.3276 -4.3444 20 6 3.3316 -9.1615 -4.7267 21 7 4.1553 -10.1721 -4.8098 22 6 3.7657 -11.4157 -4.5194 23 6 2.4832 -11.6510 -4.1257 24 6 1.5935 -10.5605 -4.0373 25 8 0.4363 -10.7273 -3.6891 26 6 -0.6726 -4.5144 -1.4293 27 6 -0.4703 -4.0246 0.0134 28 1 -1.3137 -4.2674 0.6596 29 6 -0.1348 -2.5245 0.0005 30 1 -0.4849 0.8401 0.0004 31 1 2.7833 -3.7447 0.6872 32 1 2.2678 -3.9813 -1.0066 33 1 0.4259 -6.8096 0.1286 34 1 1.9450 -6.2354 -0.6150 35 1 0.9127 -8.3148 -2.1314 36 1 2.2386 -7.2483 -2.6538 37 1 1.4576 -7.4253 -5.0002 38 1 0.1315 -8.4918 -4.4785 39 1 3.6856 -8.1707 -4.9702 40 1 4.4666 -12.2338 -4.5959 41 1 2.1543 -12.6517 -3.8873 42 1 -0.3956 -3.7255 -2.1286 43 1 -1.7157 -4.7920 -1.5814 44 1 -0.5489 -2.0621 -0.8955 45 1 -0.5492 -2.0460 0.8879 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049140047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:56 Heat of formation + Delta-G solvation = -12.313919 kcal Electronic energy + Delta-G solvation = -28384.563896 eV Core-core repulsion = 24402.606331 eV Total energy + Delta-G solvation = -3981.957565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.83670 -41.56599 -39.74191 -38.69605 -36.81780 -36.57397 -34.11420 -32.72478 -31.98477 -31.50677 -31.26777 -27.79030 -27.13496 -26.35738 -25.39986 -24.51320 -23.45793 -21.93324 -20.86464 -20.38921 -19.35897 -19.03923 -18.65481 -18.14137 -17.52177 -17.31578 -17.06910 -16.74531 -16.31961 -16.10476 -15.51646 -15.46339 -15.35717 -14.94952 -14.71810 -14.35142 -14.12747 -13.99529 -13.94354 -13.74489 -13.53490 -13.46383 -13.28477 -13.11202 -12.72971 -12.70412 -12.40718 -12.01350 -11.87026 -11.71528 -11.59570 -11.55594 -11.44040 -11.28625 -11.08170 -10.96575 -10.70038 -9.68349 -9.58528 -8.88026 -7.85561 -5.20601 -0.32115 0.80901 1.29595 1.45988 1.47447 1.51803 1.56058 2.00494 2.49417 2.62329 3.23287 3.30553 3.34303 3.45616 3.52594 3.61427 3.64680 3.79659 3.84862 3.95011 3.96946 4.20809 4.25861 4.30142 4.32973 4.52011 4.54520 4.58353 4.65885 4.73119 4.79379 4.82416 4.87393 4.91975 5.03355 5.11974 5.22246 5.37432 5.39518 5.48426 5.56344 5.60618 5.77709 6.21248 6.48192 6.71923 6.81561 7.03181 7.11391 7.80336 8.41525 9.24609 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020812 B = 0.002437 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.074265 B =11485.892557 C =12013.953769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.977 3.023 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.240 4.240 8 H 0.084 0.916 9 N -0.625 5.625 10 C 0.139 3.861 11 C -0.096 4.096 12 H 0.125 0.875 13 C 0.113 3.887 14 N -0.609 5.609 15 C 0.528 3.472 16 O -0.586 6.586 17 C -0.136 4.136 18 C 0.108 3.892 19 N -0.515 5.515 20 C 0.384 3.616 21 N -0.557 5.557 22 C 0.169 3.831 23 C -0.311 4.311 24 C 0.500 3.500 25 O -0.588 6.588 26 C 0.127 3.873 27 C -0.112 4.112 28 H 0.113 0.887 29 C 0.197 3.803 30 H 0.246 0.754 31 H 0.046 0.954 32 H 0.016 0.984 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.246 0.754 40 H 0.198 0.802 41 H 0.160 0.840 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.005 0.995 45 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.008 -22.672 -5.084 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.369 4.369 8 H 0.102 0.898 9 N -0.351 5.351 10 C 0.014 3.986 11 C -0.115 4.115 12 H 0.143 0.857 13 C -0.009 4.009 14 N -0.342 5.342 15 C 0.318 3.682 16 O -0.467 6.467 17 C -0.176 4.176 18 C -0.015 4.015 19 N -0.230 5.230 20 C 0.102 3.898 21 N -0.278 5.278 22 C 0.030 3.970 23 C -0.336 4.336 24 C 0.302 3.698 25 O -0.470 6.470 26 C 0.004 3.996 27 C -0.132 4.132 28 H 0.132 0.868 29 C 0.072 3.928 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.101 0.899 39 H 0.261 0.739 40 H 0.215 0.785 41 H 0.177 0.823 42 H 0.054 0.946 43 H 0.082 0.918 44 H 0.024 0.976 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 8.707 -22.486 -5.649 24.766 hybrid contribution -1.087 1.350 0.189 1.744 sum 7.620 -21.136 -5.460 23.122 Atomic orbital electron populations 1.70184 1.06300 1.25205 1.58424 1.25648 0.96589 1.01081 1.02734 0.85100 0.77812 0.79258 0.77315 1.21659 1.22241 1.19025 1.19445 0.91044 0.83685 1.42707 0.89789 1.44547 1.02233 1.01392 1.86942 1.21468 0.95325 0.84350 0.97449 1.22989 0.93667 0.93715 1.01176 0.85656 1.22200 0.98363 0.97004 0.83344 1.48345 1.43886 1.29598 1.12326 1.20517 0.82846 0.84005 0.80817 1.90713 1.48456 1.70700 1.36797 1.21852 1.01722 0.95052 0.98981 1.21721 0.95432 0.86231 0.98098 1.46892 1.12890 1.10267 1.52904 1.26017 0.77808 1.01952 0.84012 1.68548 1.34205 1.00177 1.24915 1.23152 0.93912 0.94503 0.85457 1.22988 0.95619 1.00290 1.14663 1.17843 0.89020 0.83749 0.79168 1.90951 1.20244 1.84665 1.51157 1.21658 0.94286 0.87162 0.96516 1.22975 0.99369 0.96047 0.94791 0.86850 1.20713 0.84074 0.90182 0.97837 0.94491 0.93594 0.96606 0.88397 0.87998 0.87716 0.84793 0.85340 0.89937 0.73855 0.78525 0.82270 0.94590 0.91796 0.97647 0.96854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.98 10.25 21.65 0.22 -56.76 16 2 C -0.07 -3.81 5.48 84.86 0.47 -3.34 16 3 Si 0.98 45.28 29.55 68.60 2.03 47.31 16 4 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.24 -13.08 10.25 84.03 0.86 -12.22 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 9 N -0.62 -30.66 3.38 -697.58 -2.36 -33.01 16 10 C 0.14 5.01 6.49 86.65 0.56 5.57 16 11 C -0.10 -2.59 4.16 -9.26 -0.04 -2.63 16 12 H 0.13 2.84 8.14 -2.38 -0.02 2.82 16 13 C 0.11 2.24 5.77 86.71 0.50 2.74 16 14 N -0.61 -16.49 3.30 -817.33 -2.70 -19.19 16 15 C 0.53 14.04 7.84 87.66 0.69 14.72 16 16 O -0.59 -20.49 16.29 -3.02 -0.05 -20.54 16 17 C -0.14 -2.22 5.05 29.85 0.15 -2.07 16 18 C 0.11 1.78 4.66 86.38 0.40 2.18 16 19 N -0.51 -7.61 2.57 -655.04 -1.68 -9.29 16 20 C 0.38 3.45 11.48 180.32 2.07 5.52 16 21 N -0.56 -6.33 10.39 -199.74 -2.08 -8.41 16 22 C 0.17 1.77 11.20 83.96 0.94 2.71 16 23 C -0.31 -4.79 10.07 22.48 0.23 -4.56 16 24 C 0.50 10.69 7.45 84.88 0.63 11.32 16 25 O -0.59 -17.99 16.78 -5.26 -0.09 -18.08 16 26 C 0.13 4.29 6.22 86.59 0.54 4.83 16 27 C -0.11 -3.75 4.01 -9.48 -0.04 -3.78 16 28 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 29 C 0.20 9.38 4.78 86.59 0.41 9.79 16 30 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.02 0.59 7.72 -2.39 -0.02 0.57 16 33 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.10 1.51 7.43 -2.38 -0.02 1.49 16 35 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.13 1.31 7.88 -2.39 -0.02 1.29 16 37 H 0.13 1.59 7.97 -2.39 -0.02 1.57 16 38 H 0.08 1.93 7.42 -2.39 -0.02 1.91 16 39 H 0.25 0.05 8.02 -2.91 -0.02 0.03 16 40 H 0.20 0.71 8.06 -2.91 -0.02 0.68 16 41 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.04 1.51 7.30 -2.39 -0.02 1.49 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.01 0.30 6.73 -2.38 -0.02 0.28 16 45 H 0.01 0.71 7.38 -2.39 -0.02 0.70 16 Total: -1.00 -83.50 367.71 2.67 -80.83 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.00 Total: 6.34 kcal Atomic # 6 Polarization: 22.42 SS G_CDS: 8.37 Total: 30.80 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -8.59 Total: -126.65 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -0.14 Total: -38.62 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -83.50 2.67 -80.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049140047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.516 kcal (2) G-P(sol) polarization free energy of solvation -83.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds