Wall clock time and date at job start Tue Mar 31 2020 17:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40468 * 119.77031 * 2 1 4 4 C 1.36600 * 118.31829 * 180.02562 * 3 2 1 5 5 C 1.41166 * 117.80592 * 359.76243 * 4 3 2 6 6 O 1.22062 * 120.34839 * 180.23700 * 5 4 3 7 7 N 1.34673 * 119.29962 * 0.47907 * 5 4 3 8 8 C 1.46496 * 119.16848 * 179.77997 * 7 5 4 9 9 C 1.50706 * 109.47106 * 89.72714 * 8 7 5 10 10 O 1.21279 * 119.99507 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00020 * 179.97438 * 9 8 7 12 12 C 1.46744 * 125.32859 * 359.69982 * 11 9 8 13 13 C 1.54126 * 106.61726 * 161.53065 * 12 11 9 14 14 H 1.09001 * 113.47381 * 151.39778 * 13 12 11 15 15 C 1.53966 * 109.47454 * 278.67757 * 13 12 11 16 16 N 1.46778 * 106.62643 * 138.17883 * 15 13 12 17 17 C 1.36937 * 125.33876 * 161.50896 * 16 15 13 18 18 H 1.08000 * 119.99648 * 359.97438 * 17 16 15 19 19 C 1.38806 * 119.99833 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00248 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00023 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99562 * 21 19 17 23 23 H 1.48495 * 109.47036 * 209.99679 * 21 19 17 24 24 H 1.48496 * 109.46819 * 329.99958 * 21 19 17 25 25 C 1.46669 * 109.32248 * 341.48339 * 16 15 13 26 26 C 1.53729 * 107.94327 * 0.54719 * 25 16 15 27 27 H 1.08997 * 113.05968 * 140.00416 * 26 25 16 28 28 C 1.46635 * 125.32624 * 180.02562 * 11 9 8 29 29 N 1.28380 * 121.65883 * 359.50293 * 7 5 4 30 30 H 1.09003 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.97622 * 1 2 3 32 32 H 1.08994 * 109.46883 * 59.97993 * 1 2 3 33 33 H 1.08000 * 120.83895 * 359.97438 * 3 2 1 34 34 H 1.08002 * 121.09771 * 179.97438 * 4 3 2 35 35 H 1.09001 * 109.47001 * 329.73005 * 8 7 5 36 36 H 1.09000 * 109.47574 * 209.73221 * 8 7 5 37 37 H 1.09002 * 110.00943 * 280.96901 * 12 11 9 38 38 H 1.09000 * 110.01160 * 42.34118 * 12 11 9 39 39 H 1.09000 * 110.02562 * 257.46846 * 15 13 12 40 40 H 1.08998 * 110.02772 * 18.88485 * 15 13 12 41 41 H 0.97008 * 120.00325 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.77338 * 240.92893 * 25 16 15 43 43 H 1.08998 * 109.77508 * 120.16933 * 25 16 15 44 44 H 1.09008 * 109.76351 * 300.47817 * 28 11 9 45 45 H 1.08997 * 109.76883 * 61.19898 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2045 1.2193 0.0000 4 6 3.5700 1.1847 -0.0005 5 6 4.1967 -0.0803 0.0041 6 8 5.4143 -0.1653 0.0082 7 7 3.4369 -1.1922 -0.0010 8 6 4.0902 -2.5034 -0.0010 9 6 4.3149 -2.9528 1.4198 10 8 3.9634 -2.2474 2.3416 11 7 4.9055 -4.1389 1.6660 12 6 5.3685 -5.0847 0.6440 13 6 6.3658 -6.0319 1.3396 14 1 6.4072 -7.0244 0.8907 15 6 7.7446 -5.3522 1.4258 16 7 8.2757 -5.6477 2.7619 17 6 9.5906 -5.5493 3.1311 18 1 10.3312 -5.2324 2.4117 19 6 9.9717 -5.8569 4.4299 20 7 9.0690 -6.2426 5.3067 21 14 11.7656 -5.7233 4.9334 22 1 12.0363 -4.3549 5.4425 23 1 12.0553 -6.7147 6.0004 24 1 12.6312 -5.9942 3.7576 25 6 7.1769 -6.0644 3.6396 26 6 5.8793 -6.0459 2.8155 27 1 5.2223 -6.8875 3.0347 28 6 5.1798 -4.6894 2.9972 29 7 2.1545 -1.1320 -0.0005 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3633 0.5141 -0.8898 33 1 1.6744 2.1603 -0.0004 34 1 4.1511 2.0951 -0.0010 35 1 5.0487 -2.4317 -0.5153 36 1 3.4556 -3.2256 -0.5145 37 1 4.5246 -5.6510 0.2502 38 1 5.8668 -4.5474 -0.1629 39 1 8.4087 -5.7570 0.6622 40 1 7.6386 -4.2752 1.2961 41 1 9.3353 -6.4572 6.2145 42 1 7.0915 -5.3723 4.4773 43 1 7.3635 -7.0720 4.0110 44 1 5.8297 -4.0109 3.5499 45 1 4.2442 -4.8268 3.5393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049182248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:40 Heat of formation + Delta-G solvation = 37.871767 kcal Electronic energy + Delta-G solvation = -28874.386965 eV Core-core repulsion = 24894.605615 eV Total energy + Delta-G solvation = -3979.781350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.26429 -40.20200 -38.27458 -37.95573 -35.44159 -35.01813 -32.33038 -32.19776 -30.87013 -29.90953 -29.58357 -27.42301 -25.53351 -25.47644 -24.24665 -23.56839 -22.78929 -20.20910 -19.67803 -19.44273 -18.44111 -17.73391 -17.40399 -16.72093 -16.56297 -16.16649 -15.85810 -15.07848 -14.74534 -14.64084 -14.57797 -13.97556 -13.88892 -13.68965 -13.32697 -13.18200 -13.04786 -12.95678 -12.78464 -12.46501 -12.26048 -12.11133 -11.81663 -11.72552 -11.47212 -11.39902 -10.90967 -10.81346 -10.77117 -10.39263 -10.12407 -10.02848 -9.93369 -9.88752 -9.81638 -9.66967 -8.62635 -8.56946 -8.45756 -6.83356 -5.72055 -3.05427 0.32654 1.44972 1.91066 2.59555 2.99130 3.33083 3.41558 3.46564 3.48041 3.84362 4.29673 4.37159 4.47340 4.48863 4.63572 4.71752 4.80410 4.94854 5.00047 5.15921 5.19719 5.21737 5.34422 5.42288 5.43141 5.51857 5.55684 5.58204 5.66105 5.75395 5.80936 5.91468 5.94079 6.09151 6.23507 6.31073 6.45699 6.59859 6.67299 6.82991 7.46078 7.51168 7.55985 7.60616 7.80396 8.00110 8.14683 8.26247 9.22382 9.82716 10.46106 11.39722 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020556 B = 0.002757 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.815896 B =10153.894900 C =10707.294045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.054 3.946 3 C -0.067 4.067 4 C -0.183 4.183 5 C 0.481 3.519 6 O -0.526 6.526 7 N -0.329 5.329 8 C 0.099 3.901 9 C 0.519 3.481 10 O -0.534 6.534 11 N -0.603 5.603 12 C 0.104 3.896 13 C -0.108 4.108 14 H 0.101 0.899 15 C 0.143 3.857 16 N -0.602 5.602 17 C -0.228 4.228 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.923 5.923 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.187 3.813 26 C -0.122 4.122 27 H 0.090 0.910 28 C 0.120 3.880 29 N -0.215 5.215 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.151 0.849 34 H 0.163 0.837 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.018 0.982 41 H 0.253 0.747 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.076 0.924 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.651 8.734 -14.716 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C -0.090 4.090 4 C -0.212 4.212 5 C 0.279 3.721 6 O -0.403 6.403 7 N -0.148 5.148 8 C -0.026 4.026 9 C 0.305 3.695 10 O -0.410 6.410 11 N -0.337 5.337 12 C -0.019 4.019 13 C -0.128 4.128 14 H 0.119 0.881 15 C 0.017 3.983 16 N -0.328 5.328 17 C -0.357 4.357 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.062 3.938 26 C -0.142 4.142 27 H 0.108 0.892 28 C -0.002 4.002 29 N -0.039 5.039 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.169 0.831 34 H 0.181 0.819 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.036 0.964 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.064 8.147 -14.034 25.035 hybrid contribution 1.270 0.887 0.434 1.608 sum -17.794 9.034 -13.600 24.149 Atomic orbital electron populations 1.20520 0.86348 1.04403 1.03110 1.21821 0.97960 0.87642 1.04273 1.22250 0.94422 0.99579 0.92775 1.22739 0.95500 0.97897 1.05112 1.18059 0.88512 0.85602 0.79904 1.91028 1.12232 1.86317 1.50728 1.46062 1.02230 1.08485 1.57993 1.21729 1.01113 0.82743 0.96969 1.20050 0.78233 0.80484 0.90726 1.90733 1.51155 1.53275 1.45866 1.48165 1.58537 1.17808 1.09158 1.22105 0.97321 0.91303 0.91176 1.22963 0.95711 0.98598 0.95530 0.88061 1.21264 0.91249 0.96286 0.89546 1.44211 1.04076 1.79196 1.05356 1.19044 0.82415 1.38977 0.95216 0.90397 1.24799 0.97973 1.01492 0.96143 1.69946 1.31426 1.51611 1.04055 0.86099 0.84164 0.77381 0.78008 1.21594 1.21652 1.20680 1.21043 0.81638 1.00283 0.90854 1.23152 0.99471 0.95281 0.96270 0.89193 1.22018 0.99645 0.95168 0.83331 1.70682 0.94703 1.29263 1.09282 0.90207 0.90017 0.90112 0.83080 0.81909 0.84859 0.85372 0.91329 0.90754 0.94557 0.96429 0.93699 0.93287 0.93235 0.90545 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 10.17 36.01 0.37 -0.06 16 2 C 0.05 0.49 6.88 -82.36 -0.57 -0.08 16 3 C -0.07 -0.53 9.87 -39.33 -0.39 -0.91 16 4 C -0.18 -1.99 10.13 -39.06 -0.40 -2.39 16 5 C 0.48 7.30 7.47 -15.19 -0.11 7.18 16 6 O -0.53 -9.89 16.65 4.86 0.08 -9.81 16 7 N -0.33 -4.56 2.71 -64.51 -0.17 -4.74 16 8 C 0.10 1.27 5.07 -5.19 -0.03 1.24 16 9 C 0.52 8.75 7.90 -10.98 -0.09 8.66 16 10 O -0.53 -11.21 16.74 5.56 0.09 -11.12 16 11 N -0.60 -9.65 3.30 -172.25 -0.57 -10.22 16 12 C 0.10 1.32 5.77 -3.32 -0.02 1.30 16 13 C -0.11 -1.70 4.16 -88.25 -0.37 -2.07 16 14 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 15 C 0.14 2.90 6.49 -3.39 -0.02 2.88 16 16 N -0.60 -15.31 3.38 -171.84 -0.58 -15.90 16 17 C -0.23 -6.43 10.25 -15.06 -0.15 -6.58 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 20 N -0.92 -27.19 10.25 55.49 0.57 -26.62 16 21 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 C 0.19 4.43 4.77 -3.57 -0.02 4.42 16 26 C -0.12 -2.16 4.01 -88.60 -0.36 -2.51 16 27 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 28 C 0.12 2.17 6.22 -3.61 -0.02 2.15 16 29 N -0.22 -2.59 10.78 33.73 0.36 -2.23 16 30 H 0.08 0.43 8.11 -51.93 -0.42 0.01 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 34 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.13 1.63 7.11 -51.93 -0.37 1.26 16 36 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.83 7.43 -51.93 -0.39 0.44 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.02 0.39 7.72 -51.93 -0.40 -0.02 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.05 1.32 6.73 -51.93 -0.35 0.97 16 43 H 0.05 1.29 7.38 -51.93 -0.38 0.91 16 44 H 0.08 1.66 7.29 -51.92 -0.38 1.28 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -38.01 368.49 -8.41 -46.42 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -6.46 Total: -1.70 kcal Atomic # 6 Polarization: 15.17 SS G_CDS: -2.26 Total: 12.90 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.39 Total: -59.71 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.17 Total: -20.93 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.01 -8.41 -46.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049182248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.293 kcal (2) G-P(sol) polarization free energy of solvation -38.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds