Wall clock time and date at job start Tue Mar 31 2020 17:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40468 * 119.77031 * 2 1 4 4 C 1.36600 * 118.31829 * 180.02562 * 3 2 1 5 5 C 1.41166 * 117.80592 * 359.76243 * 4 3 2 6 6 O 1.22062 * 120.34839 * 180.23700 * 5 4 3 7 7 N 1.34673 * 119.29962 * 0.47907 * 5 4 3 8 8 C 1.46496 * 119.16848 * 179.77997 * 7 5 4 9 9 C 1.50706 * 109.47106 * 89.72714 * 8 7 5 10 10 O 1.21279 * 119.99507 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00020 * 179.97438 * 9 8 7 12 12 C 1.46744 * 125.32859 * 359.69982 * 11 9 8 13 13 C 1.54126 * 106.61726 * 161.53065 * 12 11 9 14 14 H 1.09001 * 113.47381 * 151.39778 * 13 12 11 15 15 C 1.53966 * 109.47454 * 278.67757 * 13 12 11 16 16 N 1.46778 * 106.62643 * 138.17883 * 15 13 12 17 17 C 1.36937 * 125.33876 * 161.50896 * 16 15 13 18 18 H 1.08000 * 119.99648 * 359.97438 * 17 16 15 19 19 C 1.38806 * 119.99833 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00248 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00023 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99562 * 21 19 17 23 23 H 1.48495 * 109.47036 * 209.99679 * 21 19 17 24 24 H 1.48496 * 109.46819 * 329.99958 * 21 19 17 25 25 C 1.46669 * 109.32248 * 341.48339 * 16 15 13 26 26 C 1.53729 * 107.94327 * 0.54719 * 25 16 15 27 27 H 1.08997 * 113.05968 * 140.00416 * 26 25 16 28 28 C 1.46635 * 125.32624 * 180.02562 * 11 9 8 29 29 N 1.28380 * 121.65883 * 359.50293 * 7 5 4 30 30 H 1.09003 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.97622 * 1 2 3 32 32 H 1.08994 * 109.46883 * 59.97993 * 1 2 3 33 33 H 1.08000 * 120.83895 * 359.97438 * 3 2 1 34 34 H 1.08002 * 121.09771 * 179.97438 * 4 3 2 35 35 H 1.09001 * 109.47001 * 329.73005 * 8 7 5 36 36 H 1.09000 * 109.47574 * 209.73221 * 8 7 5 37 37 H 1.09002 * 110.00943 * 280.96901 * 12 11 9 38 38 H 1.09000 * 110.01160 * 42.34118 * 12 11 9 39 39 H 1.09000 * 110.02562 * 257.46846 * 15 13 12 40 40 H 1.08998 * 110.02772 * 18.88485 * 15 13 12 41 41 H 0.97008 * 120.00325 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.77338 * 240.92893 * 25 16 15 43 43 H 1.08998 * 109.77508 * 120.16933 * 25 16 15 44 44 H 1.09008 * 109.76351 * 300.47817 * 28 11 9 45 45 H 1.08997 * 109.76883 * 61.19898 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2045 1.2193 0.0000 4 6 3.5700 1.1847 -0.0005 5 6 4.1967 -0.0803 0.0041 6 8 5.4143 -0.1653 0.0082 7 7 3.4369 -1.1922 -0.0010 8 6 4.0902 -2.5034 -0.0010 9 6 4.3149 -2.9528 1.4198 10 8 3.9634 -2.2474 2.3416 11 7 4.9055 -4.1389 1.6660 12 6 5.3685 -5.0847 0.6440 13 6 6.3658 -6.0319 1.3396 14 1 6.4072 -7.0244 0.8907 15 6 7.7446 -5.3522 1.4258 16 7 8.2757 -5.6477 2.7619 17 6 9.5906 -5.5493 3.1311 18 1 10.3312 -5.2324 2.4117 19 6 9.9717 -5.8569 4.4299 20 7 9.0690 -6.2426 5.3067 21 14 11.7656 -5.7233 4.9334 22 1 12.0363 -4.3549 5.4425 23 1 12.0553 -6.7147 6.0004 24 1 12.6312 -5.9942 3.7576 25 6 7.1769 -6.0644 3.6396 26 6 5.8793 -6.0459 2.8155 27 1 5.2223 -6.8875 3.0347 28 6 5.1798 -4.6894 2.9972 29 7 2.1545 -1.1320 -0.0005 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3633 0.5141 -0.8898 33 1 1.6744 2.1603 -0.0004 34 1 4.1511 2.0951 -0.0010 35 1 5.0487 -2.4317 -0.5153 36 1 3.4556 -3.2256 -0.5145 37 1 4.5246 -5.6510 0.2502 38 1 5.8668 -4.5474 -0.1629 39 1 8.4087 -5.7570 0.6622 40 1 7.6386 -4.2752 1.2961 41 1 9.3353 -6.4572 6.2145 42 1 7.0915 -5.3723 4.4773 43 1 7.3635 -7.0720 4.0110 44 1 5.8297 -4.0109 3.5499 45 1 4.2442 -4.8268 3.5393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049182248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:39 Heat of formation + Delta-G solvation = 9.792913 kcal Electronic energy + Delta-G solvation = -28875.604556 eV Core-core repulsion = 24894.605615 eV Total energy + Delta-G solvation = -3980.998941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.17935 -41.55678 -39.70124 -39.00745 -36.74061 -36.26869 -34.17546 -32.99636 -32.26812 -31.33748 -30.89818 -28.40160 -27.27001 -26.95197 -25.28834 -24.48913 -24.10115 -21.99980 -20.94743 -20.86231 -19.34067 -19.10307 -18.64694 -18.26113 -17.53773 -17.40078 -17.04930 -16.77904 -16.17920 -16.00885 -15.54884 -15.46511 -14.79181 -14.72949 -14.71649 -14.62135 -14.26208 -13.85244 -13.67546 -13.58518 -13.47229 -13.35996 -13.22913 -13.15350 -13.10217 -12.77308 -12.74475 -12.27351 -12.04817 -11.91560 -11.73279 -11.66357 -11.55781 -11.48075 -11.06636 -10.83640 -10.74824 -9.78539 -9.54449 -8.92460 -7.89662 -5.24884 -0.46668 0.59377 1.00443 1.32874 1.41143 1.43835 1.52167 1.84869 2.39494 2.45600 3.06897 3.22028 3.28647 3.40426 3.58754 3.60364 3.79373 3.83193 3.89936 3.95642 4.01038 4.05888 4.16710 4.25179 4.47790 4.51380 4.55321 4.67197 4.72751 4.76166 4.78582 4.87872 4.94340 4.97950 5.01549 5.06769 5.15560 5.17656 5.34151 5.43030 5.44174 5.57249 5.73723 6.17453 6.32004 6.48116 6.85839 7.07615 7.15115 7.75951 8.36964 9.20384 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020556 B = 0.002757 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.815896 B =10153.894900 C =10707.294045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.063 3.937 3 C -0.037 4.037 4 C -0.210 4.210 5 C 0.460 3.540 6 O -0.587 6.587 7 N -0.338 5.338 8 C 0.105 3.895 9 C 0.512 3.488 10 O -0.587 6.587 11 N -0.603 5.603 12 C 0.105 3.895 13 C -0.092 4.092 14 H 0.138 0.862 15 C 0.135 3.865 16 N -0.625 5.625 17 C -0.244 4.244 18 H 0.080 0.920 19 C -0.067 4.067 20 N -0.950 5.950 21 Si 0.978 3.022 22 H -0.292 1.292 23 H -0.290 1.290 24 H -0.266 1.266 25 C 0.196 3.804 26 C -0.107 4.107 27 H 0.126 0.874 28 C 0.127 3.873 29 N -0.246 5.246 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.204 0.796 34 H 0.177 0.823 35 H 0.136 0.864 36 H 0.172 0.828 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.001 0.999 41 H 0.247 0.753 42 H 0.001 0.999 43 H 0.020 0.980 44 H 0.022 0.978 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.586 8.891 -17.637 30.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C -0.060 4.060 4 C -0.240 4.240 5 C 0.261 3.739 6 O -0.470 6.470 7 N -0.155 5.155 8 C -0.019 4.019 9 C 0.300 3.700 10 O -0.468 6.468 11 N -0.336 5.336 12 C -0.016 4.016 13 C -0.111 4.111 14 H 0.155 0.845 15 C 0.010 3.990 16 N -0.351 5.351 17 C -0.373 4.373 18 H 0.098 0.902 19 C -0.260 4.260 20 N -0.599 5.599 21 Si 0.806 3.194 22 H -0.220 1.220 23 H -0.216 1.216 24 H -0.190 1.190 25 C 0.070 3.930 26 C -0.127 4.127 27 H 0.144 0.856 28 C 0.004 3.996 29 N -0.069 5.069 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.131 0.869 33 H 0.221 0.779 34 H 0.194 0.806 35 H 0.154 0.846 36 H 0.189 0.811 37 H 0.140 0.860 38 H 0.113 0.887 39 H 0.066 0.934 40 H 0.018 0.982 41 H 0.056 0.944 42 H 0.019 0.981 43 H 0.038 0.962 44 H 0.041 0.959 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.037 8.277 -17.024 29.051 hybrid contribution 2.051 0.950 1.352 2.634 sum -19.985 9.227 -15.672 27.022 Atomic orbital electron populations 1.20745 0.83069 1.05010 1.05461 1.22800 0.99955 0.87409 1.00665 1.22794 0.93115 1.01338 0.88771 1.22906 0.97165 0.96674 1.07213 1.18787 0.88209 0.87355 0.79585 1.90974 1.14461 1.87217 1.54343 1.46080 1.02980 1.08286 1.58115 1.21823 1.02413 0.83663 0.94029 1.20848 0.77211 0.79863 0.92031 1.90692 1.53504 1.54716 1.47842 1.48260 1.58056 1.18316 1.08981 1.22405 0.98482 0.90552 0.90157 1.23007 0.93107 1.00593 0.94403 0.84469 1.21497 0.94382 0.95842 0.87320 1.44553 1.03762 1.79017 1.07815 1.19434 0.84080 1.38293 0.95526 0.90214 1.25658 1.02094 1.01899 0.96312 1.70179 1.33109 1.52691 1.03927 0.85085 0.79642 0.76800 0.77868 1.21976 1.21599 1.19018 1.20749 0.84472 0.96991 0.90744 1.22994 0.96747 0.96115 0.96801 0.85634 1.21712 0.98954 0.94306 0.84585 1.70789 0.93618 1.30841 1.11651 0.90608 0.88172 0.86902 0.77882 0.80584 0.84620 0.81087 0.86030 0.88697 0.93405 0.98151 0.94370 0.98120 0.96204 0.95899 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.17 71.24 0.72 0.25 16 2 C 0.06 0.94 6.88 43.31 0.30 1.23 16 3 C -0.04 -0.46 9.87 22.43 0.22 -0.24 16 4 C -0.21 -4.42 10.13 22.61 0.23 -4.19 16 5 C 0.46 14.30 7.47 84.98 0.63 14.94 16 6 O -0.59 -23.49 16.65 -5.52 -0.09 -23.58 16 7 N -0.34 -9.23 2.71 -476.14 -1.29 -10.52 16 8 C 0.10 2.58 5.07 85.64 0.43 3.02 16 9 C 0.51 17.33 7.90 87.66 0.69 18.02 16 10 O -0.59 -25.70 16.74 -3.02 -0.05 -25.75 16 11 N -0.60 -18.84 3.30 -817.28 -2.70 -21.53 16 12 C 0.11 2.29 5.77 86.71 0.50 2.79 16 13 C -0.09 -2.64 4.16 -9.26 -0.04 -2.68 16 14 H 0.14 3.09 8.14 -2.39 -0.02 3.07 16 15 C 0.13 5.45 6.49 86.65 0.56 6.01 16 16 N -0.63 -32.96 3.38 -697.58 -2.36 -35.32 16 17 C -0.24 -14.24 10.25 84.03 0.86 -13.38 16 18 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 19 C -0.07 -3.94 5.48 84.86 0.47 -3.47 16 20 N -0.95 -58.90 10.25 21.65 0.22 -58.68 16 21 Si 0.98 47.64 29.55 68.60 2.03 49.66 16 22 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 C 0.20 9.77 4.77 86.59 0.41 10.18 16 26 C -0.11 -3.72 4.01 -9.49 -0.04 -3.76 16 27 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 28 C 0.13 4.72 6.22 86.59 0.54 5.26 16 29 N -0.25 -5.48 10.78 -47.21 -0.51 -5.99 16 30 H 0.07 0.55 8.11 -2.39 -0.02 0.53 16 31 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.20 0.34 8.06 -2.91 -0.02 0.31 16 34 H 0.18 3.01 8.06 -2.91 -0.02 2.98 16 35 H 0.14 3.26 7.11 -2.39 -0.02 3.25 16 36 H 0.17 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.09 1.76 7.43 -2.39 -0.02 1.74 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.00 0.03 7.72 -2.39 -0.02 0.01 16 41 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 42 H 0.00 0.04 6.73 -2.39 -0.02 0.02 16 43 H 0.02 1.09 7.38 -2.39 -0.02 1.07 16 44 H 0.02 1.08 7.29 -2.38 -0.02 1.06 16 45 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -94.05 368.49 2.75 -91.30 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.00 Total: 6.43 kcal Atomic # 6 Polarization: 27.48 SS G_CDS: 6.50 Total: 33.98 kcal Atomic # 7 Polarization: -125.42 SS G_CDS: -6.63 Total: -132.05 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -0.14 Total: -49.33 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.66 kcal Total: -94.05 2.75 -91.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049182248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.094 kcal (2) G-P(sol) polarization free energy of solvation -94.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds