Wall clock time and date at job start Tue Mar 31 2020 16:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00260 * 2 1 4 4 H 1.48503 * 109.46655 * 274.97544 * 3 2 1 5 5 H 1.48498 * 109.47051 * 34.97351 * 3 2 1 6 6 H 1.48495 * 109.47176 * 154.97201 * 3 2 1 7 7 C 1.38814 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00207 * 171.44795 * 7 2 1 9 9 N 1.36938 * 119.99810 * 351.44346 * 7 2 1 10 10 C 1.47119 * 125.76855 * 3.93669 * 9 7 2 11 11 C 1.54565 * 107.25572 * 182.62739 * 10 9 7 12 12 C 1.54419 * 102.44484 * 21.67066 * 11 10 9 13 13 H 1.09006 * 110.72202 * 80.56219 * 12 11 10 14 14 C 1.48209 * 125.76459 * 183.96687 * 9 7 2 15 15 H 1.08993 * 112.30763 * 33.41915 * 14 9 7 16 16 C 1.53016 * 107.11727 * 270.81851 * 14 9 7 17 17 C 1.52732 * 110.76833 * 191.95375 * 16 14 9 18 18 C 1.53374 * 108.48737 * 63.79399 * 17 16 14 19 19 N 1.45128 * 111.60818 * 203.41765 * 12 11 10 20 20 C 1.34770 * 119.57772 * 248.66303 * 19 12 11 21 21 O 1.21567 * 120.00441 * 352.50309 * 20 19 12 22 22 C 1.47724 * 119.99841 * 172.50495 * 20 19 12 23 23 C 1.40942 * 125.97262 * 172.72937 * 22 20 19 24 24 C 1.36176 * 107.94965 * 179.70942 * 23 22 20 25 25 N 1.35811 * 107.30905 * 0.81421 * 24 23 22 26 26 N 1.31837 * 125.97231 * 353.03197 * 22 20 19 27 27 C 1.47430 * 108.07070 * 178.95255 * 25 24 23 28 28 C 1.54650 * 102.35689 * 344.81367 * 27 25 24 29 29 O 1.36122 * 140.88683 * 180.90261 * 24 23 22 30 30 H 0.97003 * 119.99508 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.88954 * 63.20739 * 10 9 7 32 32 H 1.09002 * 110.01605 * 302.10867 * 10 9 7 33 33 H 1.08996 * 110.81082 * 263.43549 * 11 10 9 34 34 H 1.09001 * 110.81376 * 139.90850 * 11 10 9 35 35 H 1.08999 * 109.20849 * 312.27558 * 16 14 9 36 36 H 1.08996 * 109.20950 * 71.63528 * 16 14 9 37 37 H 1.08994 * 109.64273 * 183.43361 * 17 16 14 38 38 H 1.09004 * 109.64296 * 304.06363 * 17 16 14 39 39 H 1.09003 * 109.84894 * 182.37503 * 18 17 16 40 40 H 1.09002 * 109.90700 * 61.43401 * 18 17 16 41 41 H 1.08000 * 126.02874 * 359.88343 * 23 22 20 42 42 H 1.09000 * 110.82883 * 103.02337 * 27 25 24 43 43 H 1.08996 * 110.82643 * 226.59468 * 27 25 24 44 44 H 1.09001 * 110.85260 * 266.62828 * 28 27 25 45 45 H 1.08996 * 111.02766 * 143.08007 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3926 2.1070 -1.3949 5 1 1.5043 2.6200 0.8025 6 1 3.5964 1.4120 0.5923 7 6 2.0102 -1.2022 0.0005 8 1 3.0812 -1.2075 -0.1385 9 7 1.3369 -2.3814 0.1775 10 6 -0.1220 -2.5292 0.2959 11 6 -0.4122 -4.0261 0.5493 12 6 0.9346 -4.5365 1.1061 13 1 1.0315 -4.2934 2.1643 14 6 1.9549 -3.7244 0.2828 15 1 2.9285 -3.6946 0.7718 16 6 2.0608 -4.2840 -1.1375 17 6 2.4097 -5.7706 -1.1092 18 6 1.2584 -6.5276 -0.4354 19 7 1.0864 -5.9665 0.9102 20 6 1.0689 -6.7896 1.9771 21 8 1.0639 -6.3275 3.1015 22 6 1.0557 -8.2537 1.7803 23 6 1.1814 -9.2262 2.7925 24 6 1.1141 -10.4534 2.2061 25 7 0.9702 -10.2556 0.8703 26 7 0.9298 -8.8788 0.6264 27 6 0.9209 -11.5754 0.2151 28 6 1.4501 -12.5150 1.3236 29 8 1.1428 -11.7774 2.5210 30 1 -0.4849 0.8401 -0.0004 31 1 -0.6034 -2.2094 -0.6283 32 1 -0.4908 -1.9336 1.1311 33 1 -0.6642 -4.5346 -0.3812 34 1 -1.2066 -4.1473 1.2857 35 1 1.1073 -4.1489 -1.6481 36 1 2.8372 -3.7436 -1.6789 37 1 2.5403 -6.1358 -2.1278 38 1 3.3285 -5.9206 -0.5423 39 1 1.5032 -7.5875 -0.3655 40 1 0.3417 -6.3972 -1.0104 41 1 1.3060 -9.0325 3.8477 42 1 -0.1021 -11.8351 -0.0571 43 1 1.5735 -11.5995 -0.6575 44 1 2.5253 -12.6643 1.2251 45 1 0.9248 -13.4700 1.3106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049519928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:29 Heat of formation + Delta-G solvation = 88.062113 kcal Electronic energy + Delta-G solvation = -29269.749432 eV Core-core repulsion = 25292.144498 eV Total energy + Delta-G solvation = -3977.604934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.60590 -40.37090 -38.86234 -37.69431 -35.23590 -33.63206 -32.37739 -32.21850 -30.39038 -29.18086 -28.89084 -28.10786 -25.50579 -24.23584 -24.08952 -22.61407 -22.00424 -21.61420 -20.12504 -19.78227 -18.28151 -17.78231 -17.40409 -16.85794 -16.69510 -15.97402 -15.52389 -15.39577 -15.07479 -14.71521 -14.42735 -14.24192 -14.04271 -13.65855 -13.63572 -13.33128 -13.11670 -12.85329 -12.73894 -12.40028 -12.08818 -11.96604 -11.69426 -11.43407 -11.21890 -10.91633 -10.83086 -10.72499 -10.56156 -10.19581 -10.14113 -10.04126 -9.73071 -9.58589 -9.54987 -9.44228 -8.77672 -8.54178 -8.23502 -6.82012 -5.69158 -3.00837 1.09421 1.51518 1.88851 2.42840 3.18667 3.36683 3.43255 3.49165 3.49916 3.51421 4.06221 4.13413 4.40780 4.52685 4.58047 4.74810 4.88969 4.96710 5.17453 5.29367 5.31321 5.38778 5.45203 5.54338 5.62744 5.67900 5.70218 5.89621 5.92201 6.09474 6.18969 6.21045 6.31974 6.40460 6.42165 6.53384 6.56225 6.64768 6.79782 7.03083 7.11470 7.22043 7.58550 7.60857 7.66736 7.85845 8.24708 8.29760 9.23826 9.84044 10.50541 11.42840 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032474 B = 0.002683 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.017692 B =10435.109552 C =10722.285753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.180 3.820 11 C -0.151 4.151 12 C 0.129 3.871 13 H 0.105 0.895 14 C 0.157 3.843 15 H 0.061 0.939 16 C -0.130 4.130 17 C -0.131 4.131 18 C 0.089 3.911 19 N -0.575 5.575 20 C 0.592 3.408 21 O -0.524 6.524 22 C 0.066 3.934 23 C -0.212 4.212 24 C 0.234 3.766 25 N -0.418 5.418 26 N -0.217 5.217 27 C 0.097 3.903 28 C 0.041 3.959 29 O -0.280 6.280 30 H 0.252 0.748 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.118 0.882 40 H 0.068 0.932 41 H 0.166 0.834 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 -27.345 -1.490 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.322 5.322 10 C 0.056 3.944 11 C -0.190 4.190 12 C 0.025 3.975 13 H 0.123 0.877 14 C 0.049 3.951 15 H 0.079 0.921 16 C -0.171 4.171 17 C -0.170 4.170 18 C -0.034 4.034 19 N -0.306 5.306 20 C 0.377 3.623 21 O -0.398 6.398 22 C -0.100 4.100 23 C -0.242 4.242 24 C 0.066 3.934 25 N -0.214 5.214 26 N -0.046 5.046 27 C -0.024 4.024 28 C -0.035 4.035 29 O -0.187 6.187 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.135 0.865 40 H 0.086 0.914 41 H 0.183 0.817 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.112 0.888 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.680 -26.850 -2.058 26.981 hybrid contribution 0.446 0.581 0.388 0.829 sum 2.126 -26.268 -1.670 26.407 Atomic orbital electron populations 1.69977 1.04910 1.25051 1.56658 1.24800 0.95662 0.97585 1.02239 0.86151 0.78797 0.83763 0.77373 1.21791 1.21660 1.20641 1.19022 0.91386 0.82462 1.42549 0.90409 1.44690 1.01768 1.00472 1.85252 1.21170 0.84469 0.88037 1.00772 1.23128 0.95993 0.99953 0.99972 1.21901 0.96864 0.76821 1.01915 0.87705 1.21337 0.94900 0.86217 0.92693 0.92071 1.22137 1.01966 0.92996 0.99951 1.21910 0.97902 0.97190 1.00032 1.22533 0.98983 0.99656 0.82214 1.47499 1.69418 1.07144 1.06542 1.16985 0.77623 0.82743 0.84980 1.90811 1.50312 1.75496 1.23187 1.22085 1.02338 0.95014 0.90525 1.20069 1.17523 0.85201 1.01393 1.20777 1.00306 0.86196 0.86151 1.51032 1.58319 1.05228 1.06851 1.77723 1.25084 0.81878 1.19952 1.23242 1.04861 0.76472 0.97828 1.24452 1.02995 0.96005 0.80070 1.87150 1.86941 1.11947 1.32624 0.93764 0.93907 0.93180 0.92115 0.91937 0.91841 0.92204 0.91415 0.91982 0.86527 0.91351 0.81678 0.87698 0.86927 0.88802 0.85241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.08 10.40 55.49 0.58 -26.50 16 2 C -0.01 -0.18 5.47 -17.43 -0.10 -0.28 16 3 Si 0.91 22.27 29.56 -169.99 -5.03 17.24 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.27 10.28 -15.06 -0.15 -6.42 16 8 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 9 N -0.60 -15.12 2.91 -162.19 -0.47 -15.59 16 10 C 0.18 4.42 5.19 -2.88 -0.01 4.41 16 11 C -0.15 -3.00 6.08 -25.16 -0.15 -3.15 16 12 C 0.13 2.52 3.13 -67.29 -0.21 2.30 16 13 H 0.10 2.26 6.93 -51.93 -0.36 1.90 16 14 C 0.16 3.28 3.60 -66.35 -0.24 3.04 16 15 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 16 C -0.13 -2.36 5.10 -26.86 -0.14 -2.49 16 17 C -0.13 -1.87 6.10 -26.68 -0.16 -2.04 16 18 C 0.09 1.27 5.75 -3.68 -0.02 1.25 16 19 N -0.58 -9.69 2.73 -166.21 -0.45 -10.15 16 20 C 0.59 10.24 7.64 -12.39 -0.09 10.14 16 21 O -0.52 -10.51 16.24 5.31 0.09 -10.43 16 22 C 0.07 0.98 6.76 -82.97 -0.56 0.42 16 23 C -0.21 -2.81 10.61 -39.30 -0.42 -3.22 16 24 C 0.23 2.61 8.32 -16.53 -0.14 2.48 16 25 N -0.42 -4.35 5.01 -59.63 -0.30 -4.65 16 26 N -0.22 -2.84 9.10 33.32 0.30 -2.54 16 27 C 0.10 0.45 8.10 -2.67 -0.02 0.43 16 28 C 0.04 0.14 8.08 38.02 0.31 0.45 16 29 O -0.28 -2.43 11.19 -20.13 -0.23 -2.65 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.04 1.14 7.61 -51.93 -0.40 0.75 16 32 H 0.05 1.36 7.33 -51.93 -0.38 0.98 16 33 H 0.06 1.12 6.80 -51.93 -0.35 0.77 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.22 7.12 -51.93 -0.37 0.85 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.12 1.56 4.15 -81.71 -0.34 1.22 16 40 H 0.07 0.96 7.53 -51.93 -0.39 0.57 16 41 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 42 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 45 H 0.13 0.02 8.14 -51.93 -0.42 -0.40 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -34.18 353.62 -8.65 -42.84 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.36 Total: -0.21 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -2.11 Total: 7.31 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.34 Total: -59.43 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.14 Total: -13.08 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.18 -8.65 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049519928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.899 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds