Wall clock time and date at job start Tue Mar 31 2020 16:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00260 * 2 1 4 4 H 1.48503 * 109.46655 * 274.97544 * 3 2 1 5 5 H 1.48498 * 109.47051 * 34.97351 * 3 2 1 6 6 H 1.48495 * 109.47176 * 154.97201 * 3 2 1 7 7 C 1.38814 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00207 * 171.44795 * 7 2 1 9 9 N 1.36938 * 119.99810 * 351.44346 * 7 2 1 10 10 C 1.47119 * 125.76855 * 3.93669 * 9 7 2 11 11 C 1.54565 * 107.25572 * 182.62739 * 10 9 7 12 12 C 1.54419 * 102.44484 * 21.67066 * 11 10 9 13 13 H 1.09006 * 110.72202 * 80.56219 * 12 11 10 14 14 C 1.48209 * 125.76459 * 183.96687 * 9 7 2 15 15 H 1.08993 * 112.30763 * 33.41915 * 14 9 7 16 16 C 1.53016 * 107.11727 * 270.81851 * 14 9 7 17 17 C 1.52732 * 110.76833 * 191.95375 * 16 14 9 18 18 C 1.53374 * 108.48737 * 63.79399 * 17 16 14 19 19 N 1.45128 * 111.60818 * 203.41765 * 12 11 10 20 20 C 1.34770 * 119.57772 * 248.66303 * 19 12 11 21 21 O 1.21567 * 120.00441 * 352.50309 * 20 19 12 22 22 C 1.47724 * 119.99841 * 172.50495 * 20 19 12 23 23 C 1.40942 * 125.97262 * 172.72937 * 22 20 19 24 24 C 1.36176 * 107.94965 * 179.70942 * 23 22 20 25 25 N 1.35811 * 107.30905 * 0.81421 * 24 23 22 26 26 N 1.31837 * 125.97231 * 353.03197 * 22 20 19 27 27 C 1.47430 * 108.07070 * 178.95255 * 25 24 23 28 28 C 1.54650 * 102.35689 * 344.81367 * 27 25 24 29 29 O 1.36122 * 140.88683 * 180.90261 * 24 23 22 30 30 H 0.97003 * 119.99508 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.88954 * 63.20739 * 10 9 7 32 32 H 1.09002 * 110.01605 * 302.10867 * 10 9 7 33 33 H 1.08996 * 110.81082 * 263.43549 * 11 10 9 34 34 H 1.09001 * 110.81376 * 139.90850 * 11 10 9 35 35 H 1.08999 * 109.20849 * 312.27558 * 16 14 9 36 36 H 1.08996 * 109.20950 * 71.63528 * 16 14 9 37 37 H 1.08994 * 109.64273 * 183.43361 * 17 16 14 38 38 H 1.09004 * 109.64296 * 304.06363 * 17 16 14 39 39 H 1.09003 * 109.84894 * 182.37503 * 18 17 16 40 40 H 1.09002 * 109.90700 * 61.43401 * 18 17 16 41 41 H 1.08000 * 126.02874 * 359.88343 * 23 22 20 42 42 H 1.09000 * 110.82883 * 103.02337 * 27 25 24 43 43 H 1.08996 * 110.82643 * 226.59468 * 27 25 24 44 44 H 1.09001 * 110.85260 * 266.62828 * 28 27 25 45 45 H 1.08996 * 111.02766 * 143.08007 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3926 2.1070 -1.3949 5 1 1.5043 2.6200 0.8025 6 1 3.5964 1.4120 0.5923 7 6 2.0102 -1.2022 0.0005 8 1 3.0812 -1.2075 -0.1385 9 7 1.3369 -2.3814 0.1775 10 6 -0.1220 -2.5292 0.2959 11 6 -0.4122 -4.0261 0.5493 12 6 0.9346 -4.5365 1.1061 13 1 1.0315 -4.2934 2.1643 14 6 1.9549 -3.7244 0.2828 15 1 2.9285 -3.6946 0.7718 16 6 2.0608 -4.2840 -1.1375 17 6 2.4097 -5.7706 -1.1092 18 6 1.2584 -6.5276 -0.4354 19 7 1.0864 -5.9665 0.9102 20 6 1.0689 -6.7896 1.9771 21 8 1.0639 -6.3275 3.1015 22 6 1.0557 -8.2537 1.7803 23 6 1.1814 -9.2262 2.7925 24 6 1.1141 -10.4534 2.2061 25 7 0.9702 -10.2556 0.8703 26 7 0.9298 -8.8788 0.6264 27 6 0.9209 -11.5754 0.2151 28 6 1.4501 -12.5150 1.3236 29 8 1.1428 -11.7774 2.5210 30 1 -0.4849 0.8401 -0.0004 31 1 -0.6034 -2.2094 -0.6283 32 1 -0.4908 -1.9336 1.1311 33 1 -0.6642 -4.5346 -0.3812 34 1 -1.2066 -4.1473 1.2857 35 1 1.1073 -4.1489 -1.6481 36 1 2.8372 -3.7436 -1.6789 37 1 2.5403 -6.1358 -2.1278 38 1 3.3285 -5.9206 -0.5423 39 1 1.5032 -7.5875 -0.3655 40 1 0.3417 -6.3972 -1.0104 41 1 1.3060 -9.0325 3.8477 42 1 -0.1021 -11.8351 -0.0571 43 1 1.5735 -11.5995 -0.6575 44 1 2.5253 -12.6643 1.2251 45 1 0.9248 -13.4700 1.3106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049519928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:28 Heat of formation + Delta-G solvation = 63.900564 kcal Electronic energy + Delta-G solvation = -29270.797155 eV Core-core repulsion = 25292.144498 eV Total energy + Delta-G solvation = -3978.652657 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.39437 -41.72212 -39.91873 -39.03302 -36.83932 -34.42302 -34.03980 -33.79266 -31.46161 -30.66507 -29.91540 -29.67845 -26.88562 -26.02599 -25.01923 -23.53996 -23.33176 -22.50111 -21.96308 -21.13875 -19.59586 -18.86763 -18.60296 -18.28996 -17.48663 -17.12132 -16.77824 -16.61375 -16.40181 -16.08994 -15.92546 -15.37774 -15.20596 -14.95665 -14.92149 -14.39453 -14.29369 -14.09398 -13.93265 -13.75370 -13.58904 -13.14103 -13.08100 -12.79626 -12.66572 -12.55933 -12.36183 -12.26344 -12.11798 -12.02749 -11.80826 -11.61677 -11.47339 -11.22543 -10.99724 -10.66335 -10.27462 -9.69097 -9.63659 -8.88974 -7.84812 -5.18322 0.08181 0.79223 0.93252 1.45727 1.48504 1.57279 1.61028 2.11792 2.13789 2.50816 2.98683 3.31463 3.34468 3.53570 3.68644 3.85712 3.89017 3.92042 4.03023 4.10111 4.12446 4.19235 4.27477 4.35517 4.44056 4.51454 4.55839 4.62409 4.66388 4.67272 4.74452 4.80942 4.88538 4.98866 5.05839 5.15888 5.22862 5.33298 5.42496 5.56625 5.60230 5.63629 5.73528 5.80108 6.18103 6.22113 6.40764 6.93798 7.09583 7.75585 8.41845 9.26287 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032474 B = 0.002683 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.017692 B =10435.109552 C =10722.285753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.975 3.025 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.236 4.236 8 H 0.082 0.918 9 N -0.616 5.616 10 C 0.193 3.807 11 C -0.133 4.133 12 C 0.143 3.857 13 H 0.078 0.922 14 C 0.152 3.848 15 H 0.053 0.947 16 C -0.119 4.119 17 C -0.120 4.120 18 C 0.091 3.909 19 N -0.575 5.575 20 C 0.592 3.408 21 O -0.563 6.563 22 C 0.048 3.952 23 C -0.238 4.238 24 C 0.245 3.755 25 N -0.409 5.409 26 N -0.222 5.222 27 C 0.086 3.914 28 C 0.039 3.961 29 O -0.291 6.291 30 H 0.247 0.753 31 H 0.014 0.986 32 H 0.012 0.988 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.102 0.898 38 H 0.064 0.936 39 H 0.135 0.865 40 H 0.076 0.924 41 H 0.160 0.840 42 H 0.125 0.875 43 H 0.140 0.860 44 H 0.111 0.889 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.921 -31.153 -3.160 31.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.804 3.196 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.365 4.365 8 H 0.100 0.900 9 N -0.341 5.341 10 C 0.067 3.933 11 C -0.172 4.172 12 C 0.038 3.962 13 H 0.096 0.904 14 C 0.045 3.955 15 H 0.071 0.929 16 C -0.159 4.159 17 C -0.159 4.159 18 C -0.031 4.031 19 N -0.305 5.305 20 C 0.379 3.621 21 O -0.440 6.440 22 C -0.116 4.116 23 C -0.268 4.268 24 C 0.075 3.925 25 N -0.206 5.206 26 N -0.053 5.053 27 C -0.032 4.032 28 C -0.036 4.036 29 O -0.197 6.197 30 H 0.056 0.944 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.120 0.880 38 H 0.083 0.917 39 H 0.152 0.848 40 H 0.094 0.906 41 H 0.178 0.822 42 H 0.143 0.857 43 H 0.158 0.842 44 H 0.129 0.871 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.679 -30.735 -3.763 31.080 hybrid contribution 0.165 1.525 0.886 1.771 sum 2.844 -29.211 -2.876 29.489 Atomic orbital electron populations 1.70183 1.06303 1.25275 1.58052 1.25624 0.96540 1.00864 1.02744 0.85109 0.77792 0.79436 0.77286 1.21235 1.22233 1.19503 1.19384 0.91828 0.83655 1.41597 0.89986 1.44925 1.02295 1.01689 1.85231 1.20848 0.84159 0.90542 0.97735 1.22940 0.96481 0.96666 1.01163 1.21435 0.96008 0.78754 1.00022 0.90373 1.21519 0.94520 0.84646 0.94792 0.92869 1.21921 1.01200 0.95739 0.97020 1.21862 0.97869 0.93961 1.02159 1.22740 0.99348 1.00476 0.80554 1.47475 1.69407 1.05734 1.07839 1.17328 0.76491 0.84030 0.84295 1.90781 1.51938 1.76584 1.24660 1.21519 1.04873 0.93466 0.91746 1.20084 1.19133 0.86267 1.01323 1.20652 0.98726 0.86829 0.86266 1.51393 1.56246 1.05503 1.07444 1.77467 1.25077 0.83585 1.19171 1.23854 1.07039 0.73453 0.98873 1.24958 1.04837 0.96416 0.77369 1.87169 1.86700 1.10632 1.35238 0.94401 0.96751 0.97014 0.90074 0.91158 0.92916 0.92995 0.88008 0.91686 0.84826 0.90597 0.82225 0.85673 0.84246 0.87075 0.81398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.31 10.40 21.65 0.23 -58.08 16 2 C -0.06 -3.76 5.47 84.86 0.46 -3.29 16 3 Si 0.98 46.85 29.56 68.60 2.03 48.88 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.24 -13.44 10.28 84.03 0.86 -12.57 16 8 H 0.08 4.48 7.84 -2.91 -0.02 4.46 16 9 N -0.62 -32.36 2.91 -667.05 -1.94 -34.30 16 10 C 0.19 9.91 5.19 86.79 0.45 10.36 16 11 C -0.13 -5.39 6.08 31.61 0.19 -5.20 16 12 C 0.14 5.72 3.13 46.14 0.14 5.86 16 13 H 0.08 3.56 6.93 -2.38 -0.02 3.54 16 14 C 0.15 6.48 3.60 45.08 0.16 6.64 16 15 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 16 C -0.12 -4.21 5.10 30.51 0.16 -4.05 16 17 C -0.12 -3.11 6.10 30.63 0.19 -2.92 16 18 C 0.09 2.38 5.75 86.45 0.50 2.88 16 19 N -0.57 -19.17 2.73 -798.04 -2.18 -21.35 16 20 C 0.59 20.70 7.64 86.75 0.66 21.36 16 21 O -0.56 -23.54 16.24 -3.93 -0.06 -23.61 16 22 C 0.05 1.38 6.76 42.31 0.29 1.67 16 23 C -0.24 -6.21 10.61 22.45 0.24 -5.98 16 24 C 0.25 4.96 8.32 83.60 0.70 5.65 16 25 N -0.41 -7.17 5.01 -453.32 -2.27 -9.44 16 26 N -0.22 -5.30 9.10 -48.51 -0.44 -5.74 16 27 C 0.09 0.39 8.10 86.76 0.70 1.09 16 28 C 0.04 0.08 8.08 72.54 0.59 0.67 16 29 O -0.29 -4.12 11.19 -94.93 -1.06 -5.18 16 30 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.01 0.81 7.61 -2.39 -0.02 0.79 16 32 H 0.01 0.68 7.33 -2.39 -0.02 0.66 16 33 H 0.08 2.95 6.80 -2.39 -0.02 2.94 16 34 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.05 1.98 7.12 -2.39 -0.02 1.97 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.14 3.19 4.15 -41.33 -0.17 3.02 16 40 H 0.08 1.92 7.53 -2.39 -0.02 1.91 16 41 H 0.16 4.13 8.06 -2.91 -0.02 4.11 16 42 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.14 -0.05 8.14 -2.39 -0.02 -0.07 16 44 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 45 H 0.17 -0.91 8.14 -2.39 -0.02 -0.93 16 Total: -1.00 -79.10 353.62 1.43 -77.67 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.85 Total: 9.00 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: 6.29 Total: 22.16 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -6.61 Total: -128.91 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -1.13 Total: -28.79 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -79.10 1.43 -77.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049519928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.568 kcal (2) G-P(sol) polarization free energy of solvation -79.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds