Wall clock time and date at job start Tue Mar 31 2020 16:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99893 * 2 1 4 4 H 1.48506 * 109.47080 * 239.99554 * 3 2 1 5 5 H 1.48500 * 109.47566 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47354 * 119.99799 * 3 2 1 7 7 C 1.38804 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00199 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00303 * 0.02562 * 7 2 1 10 10 C 1.46923 * 125.37813 * 179.97438 * 9 7 2 11 11 C 1.54188 * 106.26507 * 162.13244 * 10 9 7 12 12 H 1.09000 * 109.27853 * 271.43824 * 11 10 9 13 13 C 1.50713 * 110.50568 * 151.08722 * 11 10 9 14 14 C 1.51324 * 113.44837 * 289.43735 * 13 11 10 15 15 C 1.50532 * 112.60208 * 305.10897 * 14 13 11 16 16 N 1.44512 * 112.65516 * 42.37341 * 15 14 13 17 17 C 1.34778 * 116.63179 * 154.85862 * 16 15 14 18 18 O 1.21563 * 120.00056 * 176.18752 * 17 16 15 19 19 C 1.47718 * 119.99894 * 356.18770 * 17 16 15 20 20 C 1.40951 * 125.97384 * 187.01385 * 19 17 16 21 21 C 1.36168 * 107.95133 * 179.75021 * 20 19 17 22 22 N 1.35801 * 107.31513 * 0.76349 * 21 20 19 23 23 N 1.31839 * 125.97762 * 7.31850 * 19 17 16 24 24 C 1.47422 * 108.07627 * 178.98927 * 22 21 20 25 25 C 1.54647 * 102.34958 * 344.74378 * 24 22 21 26 26 O 1.36122 * 140.87882 * 180.75633 * 21 20 19 27 27 C 1.44097 * 126.73533 * 334.87772 * 16 15 14 28 28 H 1.09008 * 108.45877 * 254.35770 * 27 16 15 29 29 C 1.46824 * 125.37457 * 359.96902 * 9 7 2 30 30 H 0.97001 * 119.99778 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.10032 * 42.92665 * 10 9 7 32 32 H 1.08999 * 110.14821 * 281.35365 * 10 9 7 33 33 H 1.09000 * 108.66895 * 50.42032 * 13 11 10 34 34 H 1.09001 * 108.66810 * 168.45505 * 13 11 10 35 35 H 1.09002 * 108.97876 * 65.19279 * 14 13 11 36 36 H 1.08991 * 108.98398 * 183.90787 * 14 13 11 37 37 H 1.09001 * 108.62514 * 281.70220 * 15 14 13 38 38 H 1.09010 * 108.98110 * 163.28330 * 15 14 13 39 39 H 1.08001 * 126.02089 * 359.88616 * 20 19 17 40 40 H 1.08993 * 110.83293 * 102.95499 * 24 22 21 41 41 H 1.09003 * 110.82999 * 226.52944 * 24 22 21 42 42 H 1.08998 * 110.84956 * 266.64595 * 25 24 22 43 43 H 1.09005 * 111.02453 * 143.09681 * 25 24 22 44 44 H 1.08992 * 109.84143 * 300.43340 * 29 9 7 45 45 H 1.08996 * 109.83740 * 61.33818 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.9377 -3.7236 0.0005 11 6 0.8370 -4.7032 0.4547 12 1 0.8504 -4.7807 1.5418 13 6 1.0634 -6.0669 -0.1456 14 6 0.8058 -6.1192 -1.6358 15 6 -0.5699 -5.6303 -2.0026 16 7 -0.9520 -4.4435 -1.2718 17 6 -1.8693 -3.6453 -1.8531 18 8 -2.2864 -2.6682 -1.2623 19 6 -2.3678 -3.9577 -3.2081 20 6 -3.2143 -3.1433 -3.9871 21 6 -3.4373 -3.7801 -5.1698 22 7 -2.7677 -4.9608 -5.1258 23 7 -2.1033 -5.0496 -3.8979 24 6 -3.0179 -5.6760 -6.3903 25 6 -4.2291 -4.9090 -6.9701 26 8 -4.0978 -3.6172 -6.3489 27 6 -0.4535 -4.0252 0.0138 28 1 -1.2260 -4.2102 0.7604 29 6 -0.1362 -2.5256 0.0006 30 1 -0.4850 0.8401 -0.0004 31 1 2.7751 -3.7519 0.6977 32 1 2.2773 -3.9810 -1.0027 33 1 2.0957 -6.3631 0.0406 34 1 0.4024 -6.7795 0.3479 35 1 1.5374 -5.4914 -2.1443 36 1 0.9225 -7.1468 -1.9800 37 1 -1.2888 -6.4215 -1.7900 38 1 -0.5949 -5.4098 -3.0699 39 1 -3.6137 -2.1825 -3.6978 40 1 -2.1573 -5.6009 -7.0550 41 1 -3.2735 -6.7188 -6.2018 42 1 -5.1653 -5.3858 -6.6798 43 1 -4.1574 -4.8271 -8.0547 44 1 -0.5531 -2.0432 0.8847 45 1 -0.5506 -2.0706 -0.8989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050065346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:44 Heat of formation + Delta-G solvation = 101.774367 kcal Electronic energy + Delta-G solvation = -29949.804166 eV Core-core repulsion = 25972.793841 eV Total energy + Delta-G solvation = -3977.010326 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.38073 -40.51489 -38.69192 -37.37262 -35.37977 -33.44375 -33.11053 -31.99872 -30.28338 -29.34542 -28.91092 -27.22500 -25.53859 -24.73857 -23.83507 -22.53692 -22.03074 -21.41260 -20.46978 -19.22093 -17.88432 -17.67731 -17.14171 -16.62990 -16.49694 -15.86898 -15.57144 -15.32711 -14.99906 -14.49167 -14.28870 -14.02500 -13.93353 -13.75855 -13.64567 -13.48073 -12.88258 -12.84378 -12.56962 -12.43038 -12.12719 -11.80129 -11.52617 -11.42327 -11.12410 -10.89534 -10.71711 -10.62461 -10.40099 -10.20315 -10.00773 -9.93278 -9.84029 -9.53579 -9.26496 -9.07104 -8.54594 -8.37799 -7.87257 -6.60309 -5.48936 -2.85411 1.37281 1.75510 2.17335 2.65854 3.44022 3.51338 3.54975 3.57425 3.67602 3.76379 4.21779 4.34096 4.59569 4.64509 4.74440 4.90990 5.00452 5.05988 5.16172 5.20361 5.26048 5.37795 5.55604 5.58757 5.68275 5.79372 5.81032 5.90572 6.02844 6.06718 6.13113 6.18639 6.32899 6.35391 6.49542 6.55860 6.69028 6.77444 6.80053 6.89165 7.20751 7.44165 7.69465 7.85743 7.91904 8.18838 8.47836 8.68980 9.40734 10.01755 10.66643 11.59541 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012664 B = 0.004117 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.441350 B = 6799.326500 C = 8297.176229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.005 4.005 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.236 4.236 8 H 0.074 0.926 9 N -0.607 5.607 10 C 0.142 3.858 11 C -0.102 4.102 12 H 0.082 0.918 13 C -0.101 4.101 14 C -0.126 4.126 15 C 0.104 3.896 16 N -0.573 5.573 17 C 0.577 3.423 18 O -0.483 6.483 19 C 0.070 3.930 20 C -0.208 4.208 21 C 0.230 3.770 22 N -0.423 5.423 23 N -0.222 5.222 24 C 0.098 3.902 25 C 0.041 3.959 26 O -0.280 6.280 27 C 0.132 3.868 28 H 0.061 0.939 29 C 0.165 3.835 30 H 0.253 0.747 31 H 0.032 0.968 32 H 0.015 0.985 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.107 0.893 39 H 0.166 0.834 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.128 0.872 44 H 0.055 0.945 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.295 -17.593 -12.827 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.202 4.202 3 Si 0.738 3.262 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.364 4.364 8 H 0.092 0.908 9 N -0.334 5.334 10 C 0.015 3.985 11 C -0.121 4.121 12 H 0.100 0.900 13 C -0.139 4.139 14 C -0.164 4.164 15 C -0.020 4.020 16 N -0.306 5.306 17 C 0.360 3.640 18 O -0.354 6.354 19 C -0.096 4.096 20 C -0.238 4.238 21 C 0.063 3.937 22 N -0.219 5.219 23 N -0.052 5.052 24 C -0.023 4.023 25 C -0.035 4.035 26 O -0.187 6.187 27 C 0.028 3.972 28 H 0.079 0.921 29 C 0.041 3.959 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.032 0.968 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.184 0.816 40 H 0.121 0.879 41 H 0.128 0.872 42 H 0.110 0.890 43 H 0.146 0.854 44 H 0.073 0.927 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.010 -17.868 -12.631 22.977 hybrid contribution 0.156 1.308 -0.298 1.351 sum -6.854 -16.560 -12.929 22.099 Atomic orbital electron populations 1.70000 1.04485 1.24984 1.55907 1.24830 0.95679 0.97452 1.02245 0.86283 0.78451 0.83763 0.77699 1.21378 1.21620 1.21305 1.18919 0.90208 0.82471 1.44823 0.90773 1.44377 1.01828 0.99797 1.87357 1.21378 0.93858 0.86070 0.97170 1.21341 0.95741 0.94566 1.00468 0.90005 1.20492 1.01638 0.96542 0.95258 1.20928 0.97132 1.01227 0.97149 1.21161 0.96025 0.86861 0.97926 1.46639 1.40592 1.23223 1.20143 1.17048 0.80823 0.83313 0.82835 1.90932 1.56346 1.25830 1.62284 1.22268 0.98414 0.92662 0.96243 1.20116 1.09292 1.04808 0.89587 1.20756 0.93681 0.90437 0.88875 1.51042 1.39632 1.17031 1.14196 1.77962 1.16724 1.21369 0.89121 1.23172 0.99308 0.98530 0.81282 1.24420 0.98015 0.80944 1.00137 1.87140 1.73790 1.29126 1.28682 1.21135 0.94842 0.99066 0.82130 0.92115 1.21673 0.83697 0.86628 1.03903 0.93656 0.95012 0.96773 0.91567 0.92490 0.91476 0.90977 0.92910 0.87642 0.81633 0.87934 0.87189 0.88987 0.85433 0.92686 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.46 10.26 55.49 0.57 -27.89 16 2 C 0.00 -0.14 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 23.19 29.55 -169.99 -5.02 18.17 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.94 10.25 -15.06 -0.15 -7.09 16 8 H 0.07 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.61 -16.47 3.39 -171.74 -0.58 -17.05 16 10 C 0.14 3.07 6.65 -3.19 -0.02 3.05 16 11 C -0.10 -1.83 3.08 -91.50 -0.28 -2.11 16 12 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 13 C -0.10 -1.40 5.19 -28.72 -0.15 -1.55 16 14 C -0.13 -1.71 5.75 -28.81 -0.17 -1.88 16 15 C 0.10 1.59 5.17 -6.34 -0.03 1.56 16 16 N -0.57 -10.93 3.09 -172.27 -0.53 -11.46 16 17 C 0.58 11.98 6.85 -12.39 -0.08 11.89 16 18 O -0.48 -11.83 14.06 5.31 0.07 -11.76 16 19 C 0.07 1.25 6.70 -82.96 -0.56 0.70 16 20 C -0.21 -3.48 10.61 -39.30 -0.42 -3.89 16 21 C 0.23 3.21 8.32 -16.54 -0.14 3.07 16 22 N -0.42 -5.35 5.01 -59.64 -0.30 -5.65 16 23 N -0.22 -3.41 8.89 33.32 0.30 -3.12 16 24 C 0.10 0.64 8.10 -2.67 -0.02 0.62 16 25 C 0.04 0.22 8.08 38.02 0.31 0.53 16 26 O -0.28 -3.12 11.19 -20.13 -0.23 -3.35 16 27 C 0.13 2.74 3.11 -69.42 -0.22 2.52 16 28 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 29 C 0.17 4.39 4.13 -3.72 -0.02 4.37 16 30 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.01 0.32 6.68 -51.93 -0.35 -0.03 16 33 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.01 6.98 -51.93 -0.36 0.65 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.11 1.67 4.70 -64.83 -0.30 1.36 16 39 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.06 1.64 7.36 -51.93 -0.38 1.26 16 45 H 0.08 2.41 4.54 -51.93 -0.24 2.17 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -37.10 348.24 -8.76 -45.87 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.25 Total: -0.55 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: -2.04 Total: 11.54 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -0.55 Total: -65.17 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.15 Total: -15.10 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.10 -8.76 -45.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050065346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.642 kcal (2) G-P(sol) polarization free energy of solvation -37.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds